Wall clock time and date at job start Tue Mar 31 2020 06:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47264 * 2 1 4 4 C 1.52994 * 109.47066 * 239.99704 * 2 1 3 5 5 O 1.45204 * 109.46916 * 119.99825 * 2 1 3 6 6 C 1.34231 * 117.00200 * 60.00394 * 5 2 1 7 7 O 1.20824 * 119.99431 * 359.97438 * 6 5 2 8 8 C 1.50692 * 120.00109 * 180.02562 * 6 5 2 9 9 H 1.08998 * 109.49536 * 300.06099 * 8 6 5 10 10 C 1.53045 * 109.49808 * 179.97438 * 8 6 5 11 11 C 1.53045 * 109.53836 * 178.64591 * 10 8 6 12 12 C 1.53196 * 109.30958 * 61.36916 * 11 10 8 13 13 N 1.46928 * 108.77127 * 305.36158 * 12 11 10 14 14 C 1.34786 * 120.62893 * 233.58367 * 13 12 11 15 15 O 1.21689 * 119.99957 * 174.76252 * 14 13 12 16 16 C 1.46367 * 120.00036 * 354.76601 * 14 13 12 17 17 H 1.08000 * 120.00126 * 4.98827 * 16 14 13 18 18 C 1.40051 * 120.00070 * 184.99451 * 16 14 13 19 19 N 1.30668 * 119.99819 * 184.98970 * 18 16 14 20 20 Si 1.86795 * 120.00023 * 4.99152 * 18 16 14 21 21 H 1.48499 * 109.47180 * 180.02562 * 20 18 16 22 22 H 1.48502 * 109.47104 * 300.00173 * 20 18 16 23 23 H 1.48504 * 109.47011 * 59.99883 * 20 18 16 24 24 C 1.46924 * 118.74333 * 53.86659 * 13 12 11 25 25 H 1.09002 * 109.47216 * 299.99980 * 1 2 3 26 26 H 1.08997 * 109.47356 * 60.00006 * 1 2 3 27 27 H 1.09007 * 109.47011 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47565 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46928 * 300.00255 * 3 2 1 30 30 H 1.09002 * 109.46987 * 59.99880 * 3 2 1 31 31 H 1.09002 * 109.47350 * 300.00237 * 4 2 1 32 32 H 1.08997 * 109.47232 * 60.00259 * 4 2 1 33 33 H 1.09004 * 109.47589 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.45709 * 58.62789 * 10 8 6 35 35 H 1.08993 * 109.45790 * 298.67092 * 10 8 6 36 36 H 1.09002 * 109.49773 * 301.42025 * 11 10 8 37 37 H 1.08994 * 109.51994 * 181.33052 * 11 10 8 38 38 H 1.08994 * 109.58619 * 185.58011 * 12 11 10 39 39 H 1.09001 * 109.58775 * 65.14765 * 12 11 10 40 40 H 0.97004 * 120.00513 * 355.00241 * 19 18 16 41 41 H 1.08998 * 109.58851 * 65.91674 * 24 13 12 42 42 H 1.08991 * 109.58985 * 186.34845 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6533 -1.9684 1.3380 7 8 0.9560 -2.5025 0.5083 8 6 2.1173 -2.7433 2.5442 9 1 3.2067 -2.7714 2.5616 10 6 1.5700 -4.1710 2.4758 11 6 2.0683 -4.9686 3.6831 12 6 1.5538 -4.3148 4.9695 13 7 1.9533 -2.9009 4.9738 14 6 2.6275 -2.3810 6.0187 15 8 3.0360 -1.2357 5.9701 16 6 2.8685 -3.1939 7.2118 17 1 2.5777 -4.2339 7.2243 18 6 3.4759 -2.6230 8.3372 19 7 3.7797 -3.3702 9.3652 20 14 3.8518 -0.7935 8.3685 21 1 4.4905 -0.4415 9.6621 22 1 4.7744 -0.4585 7.2541 23 1 2.5898 -0.0262 8.2140 24 6 1.5985 -2.0630 3.8202 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1391 33 1 3.1300 -0.7209 -1.2495 34 1 1.9142 -4.6481 1.5582 35 1 0.4805 -4.1429 2.4836 36 1 3.1583 -4.9760 3.6896 37 1 1.6978 -5.9918 3.6217 38 1 1.9859 -4.8191 5.8338 39 1 0.4669 -4.3875 5.0069 40 1 3.5198 -4.3046 9.3794 41 1 0.5152 -1.9559 3.7658 42 1 2.0600 -1.0813 3.9260 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331066182.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:23 Heat of formation + Delta-G solvation = -149.261593 kcal Electronic energy + Delta-G solvation = -23522.308847 eV Core-core repulsion = 20080.450507 eV Total energy + Delta-G solvation = -3441.858340 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.96304 -38.90082 -37.21069 -36.02656 -34.15764 -32.97649 -32.13582 -31.00422 -27.55304 -27.53588 -26.65518 -24.87194 -23.84499 -22.10877 -20.51679 -19.51695 -19.09369 -17.56994 -16.92383 -16.50016 -16.13835 -15.72840 -14.96439 -14.58811 -14.43154 -13.97487 -13.90591 -13.69803 -13.54024 -13.22448 -12.78842 -12.62035 -12.38385 -12.25386 -12.10565 -12.04416 -12.02436 -12.01940 -11.60742 -11.34253 -11.08333 -10.79223 -10.61938 -10.44615 -10.36612 -10.31733 -10.21142 -9.90465 -9.08873 -8.98603 -7.92718 -7.69775 -7.01966 -4.96171 2.25751 2.68304 3.56666 3.67107 3.98340 4.20729 4.28754 4.55138 4.58197 4.62074 4.69985 4.77316 4.83401 4.98961 5.23853 5.32418 5.36516 5.36966 5.46280 5.49970 5.54783 5.58532 5.67631 5.73316 5.77695 5.87226 5.92424 6.03851 6.08444 6.13541 6.13883 6.16245 6.27046 6.35390 6.52267 6.57748 7.17999 7.69133 7.72415 7.87818 8.07146 8.80395 8.90928 9.98120 10.30716 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021983 B = 0.004838 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.415261 B = 5786.670011 C = 6780.318931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.114 3.886 3 C -0.141 4.141 4 C -0.182 4.182 5 O -0.344 6.344 6 C 0.476 3.524 7 O -0.509 6.509 8 C -0.099 4.099 9 H 0.109 0.891 10 C -0.097 4.097 11 C -0.135 4.135 12 C 0.118 3.882 13 N -0.632 5.632 14 C 0.554 3.446 15 O -0.614 6.614 16 C -0.596 4.596 17 H 0.077 0.923 18 C 0.061 3.939 19 N -0.831 5.831 20 Si 1.128 2.872 21 H -0.322 1.322 22 H -0.280 1.280 23 H -0.291 1.291 24 C 0.132 3.868 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.049 0.951 40 H 0.277 0.723 41 H 0.052 0.948 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.205 1.848 -17.698 18.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.078 3.922 3 C -0.199 4.199 4 C -0.239 4.239 5 O -0.261 6.261 6 C 0.320 3.680 7 O -0.397 6.397 8 C -0.119 4.119 9 H 0.127 0.873 10 C -0.135 4.135 11 C -0.173 4.173 12 C -0.006 4.006 13 N -0.366 5.366 14 C 0.365 3.635 15 O -0.507 6.507 16 C -0.631 4.631 17 H 0.095 0.905 18 C -0.157 4.157 19 N -0.459 5.459 20 Si 0.961 3.039 21 H -0.254 1.254 22 H -0.207 1.207 23 H -0.218 1.218 24 C 0.008 3.992 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.539 3.373 -17.086 17.998 hybrid contribution -0.916 -1.579 -1.250 2.212 sum -5.455 1.794 -18.335 19.214 Atomic orbital electron populations 1.22486 0.94131 1.04682 1.02679 1.22167 0.94386 0.92432 0.83215 1.21849 1.02337 0.92660 1.03005 1.22482 1.01683 1.03091 0.96651 1.86637 1.69483 1.25415 1.44612 1.23674 0.76835 0.80421 0.87102 1.90528 1.35546 1.70068 1.43605 1.21697 1.03422 0.95240 0.91539 0.87267 1.21375 1.01160 0.92258 0.98678 1.21979 1.01697 0.98745 0.94890 1.21540 0.98377 0.82700 0.98004 1.47767 1.60638 1.09385 1.18788 1.18506 0.76140 0.86402 0.82462 1.90143 1.58194 1.21346 1.80996 1.22142 1.43884 0.98722 0.98391 0.90469 1.27165 0.89338 1.08586 0.90573 1.70661 1.34982 1.09409 1.30820 0.82404 0.77862 0.71282 0.72362 1.25422 1.20749 1.21814 1.21178 0.98515 0.96240 0.83316 0.91836 0.91259 0.89841 0.91413 0.90565 0.91238 0.89855 0.91238 0.92037 0.91459 0.91224 0.91407 0.90924 0.88537 0.93287 0.91189 0.92991 0.88215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 8.37 37.16 0.31 -1.72 16 2 C 0.11 1.34 1.13 -90.63 -0.10 1.24 16 3 C -0.14 -1.35 8.85 37.16 0.33 -1.03 16 4 C -0.18 -1.95 8.37 37.15 0.31 -1.64 16 5 O -0.34 -5.06 9.82 -39.26 -0.39 -5.45 16 6 C 0.48 7.16 6.57 36.00 0.24 7.39 16 7 O -0.51 -7.88 11.48 -18.75 -0.22 -8.10 16 8 C -0.10 -1.53 2.79 -91.43 -0.26 -1.78 16 9 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 10 C -0.10 -1.35 4.46 -26.68 -0.12 -1.46 16 11 C -0.13 -1.91 6.08 -26.61 -0.16 -2.08 16 12 C 0.12 2.06 6.31 -3.71 -0.02 2.04 16 13 N -0.63 -13.37 2.97 -174.17 -0.52 -13.89 16 14 C 0.55 14.52 7.46 -12.99 -0.10 14.43 16 15 O -0.61 -17.44 11.47 5.20 0.06 -17.38 16 16 C -0.60 -16.34 9.28 -35.63 -0.33 -16.67 16 17 H 0.08 2.05 5.90 -52.49 -0.31 1.74 16 18 C 0.06 1.73 5.52 -17.37 -0.10 1.64 16 19 N -0.83 -23.60 13.64 55.55 0.76 -22.85 16 20 Si 1.13 29.66 25.98 -169.99 -4.42 25.25 16 21 H -0.32 -8.17 7.11 56.52 0.40 -7.77 16 22 H -0.28 -7.60 6.79 56.52 0.38 -7.21 16 23 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 24 C 0.13 2.42 5.69 -3.49 -0.02 2.40 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 1.07 5.89 -51.93 -0.31 0.77 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.04 5.89 -51.93 -0.31 0.73 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 35 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 1.83 5.37 -51.93 -0.28 1.56 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.28 7.52 8.72 -40.82 -0.36 7.17 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.10 2.03 6.99 -51.93 -0.36 1.66 16 LS Contribution 329.90 15.07 4.97 4.97 Total: -1.00 -31.28 329.90 -6.41 -37.69 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -6.65 Total: -3.01 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -0.02 Total: 2.76 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.24 Total: -36.73 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.54 Total: -30.93 kcal Atomic # 14 Polarization: 29.66 SS G_CDS: -4.42 Total: 25.25 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.28 -6.41 -37.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331066182.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.569 kcal (2) G-P(sol) polarization free energy of solvation -31.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds