Wall clock time and date at job start Tue Mar 31 2020 05:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47096 * 2 1 4 4 C 1.52998 * 109.47493 * 239.99918 * 2 1 3 5 5 O 1.45201 * 109.47069 * 119.99875 * 2 1 3 6 6 C 1.34225 * 117.00152 * 60.00240 * 5 2 1 7 7 O 1.20827 * 120.00171 * 359.97438 * 6 5 2 8 8 C 1.50704 * 119.99829 * 179.97438 * 6 5 2 9 9 C 1.52993 * 110.88753 * 303.87883 * 8 6 5 10 10 C 1.55164 * 111.00043 * 180.02562 * 8 6 5 11 11 C 1.54323 * 102.94187 * 206.42455 * 10 8 6 12 12 N 1.47026 * 107.26844 * 22.19413 * 11 10 8 13 13 C 1.34778 * 125.64569 * 181.02710 * 12 11 10 14 14 O 1.21686 * 120.00075 * 180.02562 * 13 12 11 15 15 C 1.46372 * 120.00190 * 0.02562 * 13 12 11 16 16 H 1.08002 * 120.00157 * 8.55433 * 15 13 12 17 17 C 1.40046 * 120.00243 * 188.55797 * 15 13 12 18 18 N 1.30677 * 120.00350 * 192.73645 * 17 15 13 19 19 Si 1.86803 * 119.99983 * 12.72970 * 17 15 13 20 20 H 1.48494 * 109.47276 * 270.00163 * 19 17 15 21 21 H 1.48500 * 109.46908 * 30.00345 * 19 17 15 22 22 H 1.48503 * 109.46881 * 150.00114 * 19 17 15 23 23 C 1.47422 * 108.70496 * 1.28646 * 12 11 10 24 24 H 1.08995 * 109.47281 * 299.99993 * 1 2 3 25 25 H 1.08997 * 109.47420 * 60.00670 * 1 2 3 26 26 H 1.09011 * 109.46987 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47725 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47339 * 299.99865 * 3 2 1 29 29 H 1.09005 * 109.47160 * 59.99962 * 3 2 1 30 30 H 1.08994 * 109.47095 * 299.99868 * 4 2 1 31 31 H 1.08999 * 109.46871 * 60.00178 * 4 2 1 32 32 H 1.09000 * 109.47441 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.47733 * 296.12010 * 9 8 6 34 34 H 1.08997 * 109.47074 * 56.12612 * 9 8 6 35 35 H 1.09003 * 109.47138 * 176.12352 * 9 8 6 36 36 H 1.08997 * 110.71817 * 88.06250 * 10 8 6 37 37 H 1.09001 * 110.87102 * 324.85931 * 10 8 6 38 38 H 1.09001 * 109.88365 * 262.77779 * 11 10 8 39 39 H 1.09000 * 110.01556 * 141.67987 * 11 10 8 40 40 H 0.96998 * 119.99663 * 354.70868 * 18 17 15 41 41 H 1.08999 * 110.36627 * 94.48256 * 23 12 11 42 42 H 1.09004 * 110.36432 * 216.80519 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6533 -1.9684 1.3379 7 8 0.9559 -2.5025 0.5083 8 6 2.1183 -2.7436 2.5437 9 6 3.6444 -2.7233 2.6500 10 6 1.5830 -4.1996 2.5090 11 6 1.5408 -4.5880 4.0020 12 7 1.4838 -3.3394 4.7763 13 6 1.4548 -3.2496 6.1208 14 8 1.4072 -2.1582 6.6568 15 6 1.4805 -4.4649 6.9362 16 1 1.6614 -5.4231 6.4718 17 6 1.2704 -4.3853 8.3185 18 7 1.5356 -5.4136 9.0801 19 14 0.6113 -2.8090 9.0739 20 1 1.7459 -1.9263 9.4461 21 1 -0.2551 -2.1128 8.0890 22 1 -0.1809 -3.1350 10.2868 23 6 1.4573 -2.2023 3.8385 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6768 -1.7489 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7208 -1.2494 33 1 4.0755 -3.2341 1.7890 34 1 3.9934 -1.6910 2.6723 35 1 3.9517 -3.2305 3.5646 36 1 2.2660 -4.8486 1.9609 37 1 0.5848 -4.2361 2.0726 38 1 2.4389 -5.1468 4.2652 39 1 0.6560 -5.1911 4.2057 40 1 1.8045 -6.2559 8.6812 41 1 0.4298 -1.8956 3.6430 42 1 2.0337 -1.3678 4.2378 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331356097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:01 Heat of formation + Delta-G solvation = -143.326547 kcal Electronic energy + Delta-G solvation = -23550.481661 eV Core-core repulsion = 20108.880684 eV Total energy + Delta-G solvation = -3441.600977 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.11978 -39.02057 -37.20036 -36.19797 -34.21830 -32.90850 -32.09027 -29.17094 -27.62901 -27.59040 -27.30679 -25.70939 -23.83151 -22.54408 -20.49473 -19.34498 -19.05310 -17.57081 -16.94524 -16.57968 -16.08591 -15.52468 -15.23260 -14.55991 -14.29545 -13.96684 -13.87305 -13.72580 -13.56044 -12.86122 -12.70947 -12.60154 -12.34149 -12.30993 -12.23161 -12.11684 -12.07321 -11.75656 -11.62413 -11.61552 -11.35858 -11.11088 -10.81191 -10.61218 -10.58432 -10.50726 -10.04108 -9.89063 -9.25798 -8.91449 -8.01222 -7.58747 -7.02509 -4.92625 2.18806 2.57489 3.56086 3.63537 3.98948 4.20644 4.26718 4.38652 4.50642 4.52744 4.56017 4.66127 4.71785 4.86252 4.97551 5.26348 5.32329 5.40172 5.43709 5.47768 5.52087 5.55554 5.62797 5.63274 5.70727 5.79265 5.89107 5.95809 6.03779 6.07201 6.10462 6.13975 6.18879 6.34068 6.42663 6.48155 6.97437 7.65712 7.75566 7.80535 8.14316 8.82270 9.00294 10.02243 10.30964 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.029107 B = 0.004311 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.727396 B = 6493.696947 C = 6973.953737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.114 3.886 3 C -0.141 4.141 4 C -0.182 4.182 5 O -0.344 6.344 6 C 0.487 3.513 7 O -0.504 6.504 8 C -0.074 4.074 9 C -0.131 4.131 10 C -0.112 4.112 11 C 0.122 3.878 12 N -0.635 5.635 13 C 0.568 3.432 14 O -0.613 6.613 15 C -0.593 4.593 16 H 0.073 0.927 17 C 0.064 3.936 18 N -0.831 5.831 19 Si 1.119 2.881 20 H -0.287 1.287 21 H -0.275 1.275 22 H -0.319 1.319 23 C 0.134 3.866 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.278 0.722 41 H 0.053 0.947 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.719 7.309 -19.554 20.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.078 3.922 3 C -0.198 4.198 4 C -0.239 4.239 5 O -0.261 6.261 6 C 0.330 3.670 7 O -0.391 6.391 8 C -0.076 4.076 9 C -0.188 4.188 10 C -0.149 4.149 11 C -0.002 4.002 12 N -0.371 5.371 13 C 0.379 3.621 14 O -0.505 6.505 15 C -0.629 4.629 16 H 0.091 0.909 17 C -0.154 4.154 18 N -0.458 5.458 19 Si 0.950 3.050 20 H -0.214 1.214 21 H -0.202 1.202 22 H -0.250 1.250 23 C 0.009 3.991 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.102 0.898 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.154 8.365 -18.070 19.945 hybrid contribution 0.416 -1.030 -1.872 2.177 sum 1.570 7.336 -19.942 21.306 Atomic orbital electron populations 1.22495 0.94052 1.04803 1.02755 1.22181 0.94465 0.92363 0.83171 1.21846 1.02209 0.92663 1.03062 1.22482 1.01628 1.03155 0.96644 1.86593 1.69519 1.25285 1.44718 1.23291 0.76659 0.80345 0.86726 1.90539 1.35288 1.70090 1.43228 1.21819 0.98545 0.95606 0.91619 1.21704 0.90747 1.03288 1.03083 1.22722 1.02555 0.92543 0.97130 1.21660 1.01546 0.88577 0.88451 1.48226 1.79487 1.04290 1.05138 1.18180 0.75675 0.90284 0.78001 1.90241 1.60160 1.30904 1.69219 1.22010 1.53300 0.93212 0.94362 0.90927 1.27092 0.90163 1.04644 0.93549 1.70632 1.33112 1.03175 1.38890 0.82645 0.77473 0.72154 0.72708 1.21357 1.20187 1.24994 1.21805 0.98924 0.91956 0.86404 0.91787 0.91185 0.89792 0.91475 0.90499 0.91289 0.89814 0.91189 0.92041 0.92239 0.91237 0.90319 0.89988 0.89613 0.92200 0.91948 0.91086 0.92896 0.90073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 8.37 37.16 0.31 -1.67 16 2 C 0.11 1.24 1.13 -90.62 -0.10 1.14 16 3 C -0.14 -1.18 8.85 37.16 0.33 -0.86 16 4 C -0.18 -1.80 8.37 37.16 0.31 -1.49 16 5 O -0.34 -4.62 9.70 -39.24 -0.38 -5.00 16 6 C 0.49 7.02 5.98 36.01 0.22 7.23 16 7 O -0.50 -7.68 11.22 -18.75 -0.21 -7.89 16 8 C -0.07 -1.10 0.90 -153.39 -0.14 -1.24 16 9 C -0.13 -1.74 8.52 37.15 0.32 -1.42 16 10 C -0.11 -1.61 5.57 -24.89 -0.14 -1.75 16 11 C 0.12 2.17 5.76 -3.06 -0.02 2.15 16 12 N -0.63 -13.85 3.31 -172.04 -0.57 -14.42 16 13 C 0.57 15.28 7.52 -12.99 -0.10 15.18 16 14 O -0.61 -17.86 12.47 5.20 0.06 -17.80 16 15 C -0.59 -16.66 9.43 -35.63 -0.34 -17.00 16 16 H 0.07 2.00 7.38 -52.49 -0.39 1.62 16 17 C 0.06 1.83 5.52 -17.37 -0.10 1.73 16 18 N -0.83 -23.85 13.64 55.55 0.76 -23.10 16 19 Si 1.12 29.44 26.39 -169.99 -4.49 24.95 16 20 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 21 H -0.28 -7.47 6.45 56.52 0.36 -7.10 16 22 H -0.32 -8.00 7.11 56.52 0.40 -7.60 16 23 C 0.13 2.47 5.84 -2.41 -0.01 2.46 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 1.07 5.89 -51.92 -0.31 0.77 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.99 5.89 -51.93 -0.31 0.68 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.88 8.04 -51.93 -0.42 0.46 16 35 H 0.08 1.16 7.91 -51.93 -0.41 0.75 16 36 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 37 H 0.09 1.25 7.39 -51.93 -0.38 0.87 16 38 H 0.06 1.05 8.10 -51.93 -0.42 0.63 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.28 7.66 8.72 -40.82 -0.36 7.31 16 41 H 0.05 0.98 8.03 -51.93 -0.42 0.57 16 42 H 0.08 1.57 7.96 -51.93 -0.41 1.15 16 LS Contribution 335.79 15.07 5.06 5.06 Total: -1.00 -32.06 335.79 -6.09 -38.15 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -6.87 Total: -4.43 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 0.54 Total: 4.47 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.19 Total: -37.52 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.53 Total: -30.69 kcal Atomic # 14 Polarization: 29.44 SS G_CDS: -4.49 Total: 24.95 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.06 -6.09 -38.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331356097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.175 kcal (2) G-P(sol) polarization free energy of solvation -32.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds