Wall clock time and date at job start Tue Mar 31 2020 05:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47183 * 2 1 4 4 C 1.52995 * 109.47254 * 239.99537 * 2 1 3 5 5 O 1.45201 * 109.46971 * 119.99671 * 2 1 3 6 6 C 1.34227 * 117.00174 * 59.99976 * 5 2 1 7 7 O 1.20826 * 119.99855 * 0.02562 * 6 5 2 8 8 C 1.50700 * 120.00209 * 180.02562 * 6 5 2 9 9 C 1.53003 * 110.37269 * 60.73516 * 8 6 5 10 10 C 1.54611 * 110.32954 * 182.92650 * 8 6 5 11 11 C 1.54945 * 102.84288 * 140.74034 * 10 8 6 12 12 N 1.48118 * 103.25072 * 322.62429 * 11 10 8 13 13 C 1.34779 * 127.03167 * 219.32456 * 12 11 10 14 14 O 1.21686 * 120.00027 * 179.97438 * 13 12 11 15 15 C 1.46373 * 119.99964 * 359.95905 * 13 12 11 16 16 H 1.08004 * 120.00112 * 359.97438 * 15 13 12 17 17 C 1.40050 * 120.00011 * 180.02562 * 15 13 12 18 18 N 1.30672 * 120.00026 * 359.97438 * 17 15 13 19 19 Si 1.86794 * 120.00191 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46826 * 89.99785 * 19 17 15 21 21 H 1.48492 * 109.47497 * 209.99854 * 19 17 15 22 22 H 1.48500 * 109.47158 * 330.00599 * 19 17 15 23 23 C 1.47484 * 105.93455 * 39.29154 * 12 11 10 24 24 H 1.09001 * 109.47043 * 300.00680 * 1 2 3 25 25 H 1.08997 * 109.47226 * 60.00426 * 1 2 3 26 26 H 1.09004 * 109.47299 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47208 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46573 * 299.99628 * 3 2 1 29 29 H 1.08996 * 109.47244 * 59.99824 * 3 2 1 30 30 H 1.09001 * 109.47567 * 299.99957 * 4 2 1 31 31 H 1.08993 * 109.47242 * 60.00314 * 4 2 1 32 32 H 1.09004 * 109.47029 * 180.02562 * 4 2 1 33 33 H 1.08999 * 109.47007 * 299.26639 * 9 8 6 34 34 H 1.08997 * 109.46825 * 59.26242 * 9 8 6 35 35 H 1.08994 * 109.47018 * 179.26628 * 9 8 6 36 36 H 1.09003 * 110.74077 * 259.07708 * 10 8 6 37 37 H 1.08999 * 110.74080 * 22.39889 * 10 8 6 38 38 H 1.08996 * 110.65893 * 81.06110 * 11 10 8 39 39 H 1.08999 * 110.66652 * 204.01595 * 11 10 8 40 40 H 0.96996 * 120.00413 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.91322 * 215.18795 * 23 12 11 42 42 H 1.08997 * 109.91328 * 93.91427 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0139 -0.6844 1.1856 6 6 1.6533 -1.9683 1.3380 7 8 0.9566 -2.5027 0.5080 8 6 2.1172 -2.7432 2.5444 9 6 1.6014 -2.0896 3.8280 10 6 1.6364 -4.2102 2.4580 11 6 2.8517 -5.0035 3.0007 12 7 4.0123 -4.2545 2.4658 13 6 5.1599 -4.7716 1.9841 14 8 6.0352 -4.0326 1.5737 15 6 5.3536 -6.2222 1.9551 16 1 4.5771 -6.8781 2.3200 17 6 6.5464 -6.7595 1.4551 18 7 7.4862 -5.9659 1.0140 19 14 6.7939 -8.6106 1.4186 20 1 6.2995 -9.1507 0.1266 21 1 8.2390 -8.9198 1.5638 22 1 6.0397 -9.2330 2.5362 23 6 3.6548 -2.8273 2.5674 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6767 -1.7490 -1.2491 31 1 1.6767 -0.2076 -2.1391 32 1 3.1300 -0.7217 -1.2489 33 1 1.9907 -1.0741 3.9003 34 1 0.5120 -2.0606 3.8085 35 1 1.9342 -2.6685 4.6895 36 1 0.7607 -4.3671 3.0878 37 1 1.4249 -4.4869 1.4251 38 1 2.8593 -4.9974 4.0906 39 1 2.8434 -6.0259 2.6231 40 1 8.3124 -6.3380 0.6681 41 1 4.0693 -2.2796 1.7210 42 1 4.0353 -2.4149 3.5018 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331356098.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:04 Heat of formation + Delta-G solvation = -127.986017 kcal Electronic energy + Delta-G solvation = -23666.147045 eV Core-core repulsion = 20225.211283 eV Total energy + Delta-G solvation = -3440.935762 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.95569 -38.66900 -36.85824 -35.77268 -34.03625 -32.55298 -31.93476 -28.85862 -27.48885 -27.40067 -27.11340 -25.56052 -23.80206 -22.54714 -20.27107 -19.35882 -18.79732 -16.95339 -16.63046 -16.23221 -15.90145 -15.50384 -15.02115 -14.46903 -14.14336 -14.03213 -13.70287 -13.68533 -13.10314 -12.64082 -12.59176 -12.34369 -12.18259 -12.02588 -11.97736 -11.90715 -11.81512 -11.46968 -11.39321 -11.25376 -11.12783 -10.95943 -10.91624 -10.71838 -10.48328 -10.31813 -10.24223 -10.13267 -9.70089 -8.86940 -7.67163 -7.30466 -6.21891 -4.66470 2.41780 2.77191 3.13723 3.20305 3.23667 4.05889 4.46015 4.52067 4.63597 4.68065 4.71709 4.79638 4.88216 4.99743 5.17726 5.39331 5.49399 5.52675 5.59811 5.66211 5.69929 5.72293 5.80087 5.82141 5.83223 5.92656 5.95550 6.06660 6.14624 6.18993 6.32994 6.33275 6.38634 6.45204 6.59259 6.70948 7.24179 7.42552 8.01173 8.07179 8.37738 8.99915 9.46162 10.54997 10.73747 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.023873 B = 0.004545 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.582536 B = 6158.592329 C = 6600.898137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.115 3.885 3 C -0.140 4.140 4 C -0.185 4.185 5 O -0.346 6.346 6 C 0.484 3.516 7 O -0.503 6.503 8 C -0.072 4.072 9 C -0.132 4.132 10 C -0.120 4.120 11 C 0.115 3.885 12 N -0.645 5.645 13 C 0.574 3.426 14 O -0.575 6.575 15 C -0.538 4.538 16 H 0.071 0.929 17 C 0.087 3.913 18 N -0.768 5.768 19 Si 0.909 3.091 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.264 1.264 23 C 0.129 3.871 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.053 0.947 39 H 0.083 0.917 40 H 0.269 0.731 41 H 0.067 0.933 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.915 9.553 1.948 16.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.079 3.921 3 C -0.197 4.197 4 C -0.242 4.242 5 O -0.264 6.264 6 C 0.327 3.673 7 O -0.391 6.391 8 C -0.074 4.074 9 C -0.189 4.189 10 C -0.158 4.158 11 C -0.010 4.010 12 N -0.385 5.385 13 C 0.381 3.619 14 O -0.457 6.457 15 C -0.574 4.574 16 H 0.089 0.911 17 C -0.133 4.133 18 N -0.396 5.396 19 Si 0.734 3.266 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.188 1.188 23 C 0.004 3.996 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.102 0.898 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.071 0.929 39 H 0.102 0.898 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.317 9.820 1.309 16.598 hybrid contribution -0.033 -0.816 -0.172 0.834 sum -13.350 9.005 1.137 16.143 Atomic orbital electron populations 1.22476 0.94301 1.04635 1.02386 1.22153 0.94114 0.92331 0.83501 1.21840 1.02539 0.92642 1.02682 1.22493 1.02234 1.03118 0.96324 1.86565 1.69756 1.25432 1.44614 1.23409 0.76548 0.80215 0.87107 1.90525 1.35696 1.69721 1.43140 1.21548 0.98777 0.95437 0.91593 1.21823 1.00773 1.01232 0.95078 1.22888 0.98365 0.90941 1.03642 1.22166 0.84581 0.97102 0.97117 1.49116 1.17875 1.03366 1.68122 1.18066 0.77858 0.89363 0.76568 1.90618 1.41548 1.61709 1.51788 1.20860 1.02561 0.89637 1.44362 0.91103 1.25731 0.95142 0.99425 0.93011 1.70019 1.04723 1.35764 1.29136 0.86345 0.77981 0.83007 0.79303 1.19690 1.20406 1.18809 1.21562 0.88840 0.87509 1.01656 0.92179 0.91270 0.89826 0.91268 0.90584 0.91606 0.89752 0.91311 0.91651 0.91318 0.92259 0.90682 0.90396 0.89355 0.92910 0.89821 0.92019 0.91429 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 8.37 37.16 0.31 -1.75 16 2 C 0.12 1.48 1.13 -90.62 -0.10 1.38 16 3 C -0.14 -1.41 8.85 37.16 0.33 -1.08 16 4 C -0.18 -2.54 8.37 37.16 0.31 -2.23 16 5 O -0.35 -5.31 9.77 -39.25 -0.38 -5.70 16 6 C 0.48 8.01 5.69 36.01 0.20 8.21 16 7 O -0.50 -8.98 10.95 -18.75 -0.21 -9.18 16 8 C -0.07 -1.13 0.90 -154.29 -0.14 -1.27 16 9 C -0.13 -1.57 8.17 37.16 0.30 -1.26 16 10 C -0.12 -1.88 5.96 -24.86 -0.15 -2.03 16 11 C 0.11 2.09 6.89 -2.13 -0.01 2.08 16 12 N -0.64 -15.04 3.29 -171.42 -0.56 -15.61 16 13 C 0.57 16.75 7.82 -12.99 -0.10 16.65 16 14 O -0.57 -19.06 15.36 5.20 0.08 -18.98 16 15 C -0.54 -15.27 9.05 -35.63 -0.32 -15.59 16 16 H 0.07 1.83 6.45 -52.48 -0.34 1.50 16 17 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 18 N -0.77 -23.16 11.83 55.55 0.66 -22.50 16 19 Si 0.91 20.16 29.56 -169.99 -5.02 15.14 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 23 C 0.13 2.56 6.26 -2.98 -0.02 2.54 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.08 1.12 5.89 -51.93 -0.31 0.82 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 1.37 5.89 -51.93 -0.31 1.06 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.97 7.85 -51.93 -0.41 0.56 16 37 H 0.09 1.55 6.92 -51.93 -0.36 1.19 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 1.56 6.65 -51.93 -0.35 1.21 16 40 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 41 H 0.07 1.50 7.54 -51.93 -0.39 1.11 16 42 H 0.06 1.11 7.68 -51.93 -0.40 0.71 16 LS Contribution 337.76 15.07 5.09 5.09 Total: -1.00 -35.14 337.76 -6.47 -41.62 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.64 Total: 2.13 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 0.52 Total: 7.99 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.09 Total: -38.11 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.51 Total: -33.86 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.14 -6.47 -41.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331356098.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.371 kcal (2) G-P(sol) polarization free energy of solvation -35.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds