Wall clock time and date at job start Tue Mar 31 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34223 * 117.00188 * 2 1 4 4 O 1.20825 * 120.00130 * 0.02562 * 3 2 1 5 5 C 1.50708 * 120.00129 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.46868 * 180.02562 * 5 3 2 7 7 C 1.37104 * 119.99580 * 263.81806 * 6 5 3 8 8 H 1.08003 * 119.99743 * 197.05287 * 7 6 5 9 9 C 1.38954 * 120.00147 * 17.05042 * 7 6 5 10 10 N 1.31405 * 119.99609 * 20.54305 * 9 7 6 11 11 Si 1.86798 * 119.99997 * 200.53966 * 9 7 6 12 12 H 1.48504 * 109.46992 * 59.99966 * 11 9 7 13 13 H 1.48502 * 109.46865 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47318 * 300.00156 * 11 9 7 15 15 C 1.34776 * 120.00373 * 84.10194 * 6 5 3 16 16 O 1.21290 * 119.99580 * 359.71526 * 15 6 5 17 17 C 1.50697 * 119.99926 * 179.72364 * 15 6 5 18 18 C 1.53004 * 109.46869 * 179.97438 * 17 15 6 19 19 C 1.53003 * 109.47175 * 299.99802 * 18 17 15 20 20 C 1.52995 * 109.47188 * 59.99805 * 18 17 15 21 21 C 1.52999 * 109.47187 * 179.97438 * 18 17 15 22 22 C 1.52995 * 117.50248 * 248.75058 * 21 18 17 23 23 C 1.52995 * 117.49988 * 180.08617 * 21 18 17 24 24 H 1.09005 * 109.46698 * 59.99896 * 1 2 3 25 25 H 1.08997 * 109.47178 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47189 * 299.99625 * 1 2 3 27 27 H 1.09001 * 109.46653 * 60.00194 * 5 3 2 28 28 H 1.09000 * 109.46875 * 300.00149 * 5 3 2 29 29 H 0.97003 * 120.00010 * 180.02562 * 10 9 7 30 30 H 1.08994 * 109.47100 * 299.98957 * 17 15 6 31 31 H 1.08998 * 109.47632 * 59.99542 * 17 15 6 32 32 H 1.09001 * 109.46900 * 60.00000 * 19 18 17 33 33 H 1.08991 * 109.46924 * 179.97438 * 19 18 17 34 34 H 1.09001 * 109.46802 * 300.00321 * 19 18 17 35 35 H 1.09004 * 109.47586 * 59.99663 * 20 18 17 36 36 H 1.09002 * 109.47559 * 180.02562 * 20 18 17 37 37 H 1.09001 * 109.47198 * 300.00190 * 20 18 17 38 38 H 1.09006 * 115.54557 * 34.41763 * 21 18 17 39 39 H 1.09006 * 117.49927 * 359.97438 * 22 21 18 40 40 H 1.08993 * 117.50217 * 145.02169 * 22 21 18 41 41 H 1.09002 * 117.50035 * 214.98416 * 23 21 18 42 42 H 1.08997 * 117.49929 * 359.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9817 2.6796 0.0011 7 6 4.2991 3.3010 -1.1791 8 1 4.8588 4.2246 -1.1696 9 6 3.9007 2.7424 -2.3875 10 7 2.9097 1.8799 -2.4175 11 14 4.7737 3.2176 -3.9691 12 1 6.2120 2.8624 -3.8665 13 1 4.1633 2.4885 -5.1097 14 1 4.6395 4.6802 -4.1884 15 6 4.0573 3.3597 1.1622 16 8 3.7765 2.8099 2.2063 17 6 4.4906 4.8030 1.1633 18 6 4.4906 5.3344 2.5981 19 6 3.0809 5.2246 3.1826 20 6 5.4603 4.5102 3.4472 21 6 4.9311 6.7996 2.5993 22 6 6.2888 7.1287 3.2231 23 6 4.9983 7.5160 3.9495 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8899 27 1 3.9564 0.7805 -0.8892 28 1 3.9557 0.7808 0.8908 29 1 2.6318 1.4897 -3.2610 30 1 5.4947 4.8812 0.7466 31 1 3.7995 5.3903 0.5587 32 1 2.7675 4.1806 3.1818 33 1 3.0810 5.6027 4.2049 34 1 2.3900 5.8118 2.5776 35 1 6.4647 4.5883 3.0308 36 1 5.4601 4.8884 4.4695 37 1 5.1470 3.4662 3.4464 38 1 4.6196 7.3848 1.7340 39 1 6.8681 6.3013 3.6330 40 1 6.8704 7.9306 2.7685 41 1 4.7314 8.5726 3.9726 42 1 4.7283 6.9436 4.8369 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340560607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:40 Heat of formation + Delta-G solvation = -88.448797 kcal Electronic energy + Delta-G solvation = -23936.694962 eV Core-core repulsion = 20497.473662 eV Total energy + Delta-G solvation = -3439.221299 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.69332 -38.99545 -37.65459 -35.46586 -34.63402 -32.93610 -31.58192 -29.02158 -27.21014 -26.77861 -25.97698 -24.51234 -22.86131 -22.00190 -20.31577 -19.17601 -18.02894 -16.79272 -16.54963 -16.38584 -15.51392 -15.44511 -15.11998 -14.65381 -14.27820 -14.10923 -13.88727 -13.16068 -12.94876 -12.70836 -12.44327 -12.41512 -11.90254 -11.55913 -11.44447 -11.29126 -11.25411 -11.15407 -10.78825 -10.75011 -10.63054 -10.54345 -10.45648 -10.26427 -10.19697 -9.83557 -9.79960 -9.52698 -9.42937 -8.99382 -8.28258 -7.92050 -6.50181 -3.98614 3.08768 3.17990 3.19495 3.51249 3.71771 4.01856 4.07243 4.09556 4.62145 4.98644 5.07476 5.19657 5.21915 5.42560 5.69004 5.71142 5.74965 5.79057 5.81128 5.95859 5.98318 6.09503 6.14690 6.26691 6.28112 6.30349 6.35571 6.40996 6.48059 6.50342 6.60867 6.66688 6.72788 6.84119 7.09040 7.16193 7.36315 7.49579 7.65753 8.24930 8.99195 9.13501 9.39803 9.81410 10.57285 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015442 B = 0.006333 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.755788 B = 4420.066247 C = 5755.887926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.377 6.377 3 C 0.485 3.515 4 O -0.499 6.499 5 C 0.157 3.843 6 N -0.431 5.431 7 C -0.334 4.334 8 H 0.104 0.896 9 C 0.037 3.963 10 N -0.870 5.870 11 Si 0.924 3.076 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.273 1.273 15 C 0.475 3.525 16 O -0.594 6.594 17 C -0.106 4.106 18 C -0.014 4.014 19 C -0.144 4.144 20 C -0.151 4.151 21 C -0.137 4.137 22 C -0.187 4.187 23 C -0.181 4.181 24 H 0.055 0.945 25 H 0.085 0.915 26 H 0.050 0.950 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.272 0.728 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.039 0.961 34 H 0.041 0.959 35 H 0.044 0.956 36 H 0.040 0.960 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.690 2.570 5.005 6.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.294 6.294 3 C 0.326 3.674 4 O -0.384 6.384 5 C 0.031 3.969 6 N -0.150 5.150 7 C -0.462 4.462 8 H 0.121 0.879 9 C -0.168 4.168 10 N -0.508 5.508 11 Si 0.751 3.249 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.198 1.198 15 C 0.265 3.735 16 O -0.480 6.480 17 C -0.146 4.146 18 C -0.014 4.014 19 C -0.201 4.201 20 C -0.208 4.208 21 C -0.155 4.155 22 C -0.224 4.224 23 C -0.218 4.218 24 H 0.073 0.927 25 H 0.103 0.897 26 H 0.068 0.932 27 H 0.139 0.861 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.209 2.495 5.335 6.290 hybrid contribution -0.035 0.484 -1.256 1.347 sum 2.174 2.979 4.078 5.499 Atomic orbital electron populations 1.22921 0.78793 1.01754 1.01604 1.86457 1.21626 1.35619 1.85730 1.23994 0.92319 0.80518 0.70574 1.90511 1.66501 1.36355 1.45020 1.20456 0.87136 0.85918 1.03414 1.43435 1.57188 1.08021 1.06318 1.19602 1.34304 1.09928 0.82318 0.87866 1.25211 0.94871 0.97114 0.99593 1.69832 1.22803 1.30269 1.27916 0.86035 0.79544 0.78814 0.80542 1.19757 1.20941 1.19843 1.20169 0.81580 0.88333 0.83389 1.90388 1.55519 1.70480 1.31647 1.21400 1.02372 0.94470 0.96308 1.19749 0.96185 0.90700 0.94787 1.22017 0.95073 1.04457 0.98588 1.22184 0.97733 1.03144 0.97702 1.22430 0.99897 0.96903 0.96300 1.23118 0.91053 1.03310 1.04895 1.22882 1.02258 1.00175 0.96527 0.92664 0.89660 0.93172 0.86082 0.90131 0.91698 0.90296 0.89868 0.89259 0.94194 0.93988 0.93697 0.94118 0.89169 0.88224 0.88210 0.89605 0.89557 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.84 16 2 O -0.38 -8.19 10.56 -39.24 -0.41 -8.60 16 3 C 0.48 12.01 6.14 36.01 0.22 12.24 16 4 O -0.50 -13.86 15.79 -18.75 -0.30 -14.15 16 5 C 0.16 3.72 5.13 -5.19 -0.03 3.70 16 6 N -0.43 -10.60 2.18 -116.09 -0.25 -10.85 16 7 C -0.33 -8.25 9.15 -14.93 -0.14 -8.38 16 8 H 0.10 2.39 6.55 -52.48 -0.34 2.05 16 9 C 0.04 0.90 4.90 -17.47 -0.09 0.82 16 10 N -0.87 -22.41 9.25 55.50 0.51 -21.89 16 11 Si 0.92 19.09 29.60 -169.99 -5.03 14.05 16 12 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 13 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 14 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 15 C 0.47 11.05 6.83 -10.99 -0.08 10.97 16 16 O -0.59 -14.42 11.03 5.55 0.06 -14.36 16 17 C -0.11 -2.08 3.20 -27.88 -0.09 -2.16 16 18 C -0.01 -0.24 0.62 -154.51 -0.10 -0.33 16 19 C -0.14 -2.62 8.02 37.16 0.30 -2.33 16 20 C -0.15 -2.52 6.77 37.16 0.25 -2.26 16 21 C -0.14 -1.99 5.14 -90.63 -0.47 -2.46 16 22 C -0.19 -2.37 9.57 -26.70 -0.26 -2.62 16 23 C -0.18 -2.29 9.39 -26.70 -0.25 -2.54 16 24 H 0.05 1.01 8.13 -51.93 -0.42 0.58 16 25 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 27 H 0.12 2.87 6.36 -51.93 -0.33 2.54 16 28 H 0.08 1.78 7.61 -51.93 -0.40 1.39 16 29 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 30 H 0.08 1.46 7.69 -51.93 -0.40 1.06 16 31 H 0.08 1.69 8.10 -51.93 -0.42 1.27 16 32 H 0.09 1.91 5.51 -51.93 -0.29 1.62 16 33 H 0.04 0.64 7.29 -51.93 -0.38 0.26 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.04 0.70 6.97 -51.93 -0.36 0.34 16 36 H 0.04 0.61 7.07 -51.93 -0.37 0.24 16 37 H 0.09 1.75 5.51 -51.93 -0.29 1.47 16 38 H 0.10 1.43 8.11 -51.93 -0.42 1.01 16 39 H 0.10 1.27 5.85 -51.93 -0.30 0.96 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.09 1.17 7.07 -51.93 -0.37 0.80 16 LS Contribution 331.99 15.07 5.00 5.00 Total: -1.00 -29.19 331.99 -6.39 -35.58 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -6.33 Total: 8.75 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 0.36 Total: 6.47 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: 0.26 Total: -32.75 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -0.65 Total: -37.11 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.19 -6.39 -35.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340560607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.864 kcal (2) G-P(sol) polarization free energy of solvation -29.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds