Wall clock time and date at job start Tue Mar 31 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34223 * 117.00188 * 2 1 4 4 O 1.20825 * 120.00130 * 0.02562 * 3 2 1 5 5 C 1.50708 * 120.00129 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.46868 * 180.02562 * 5 3 2 7 7 C 1.37104 * 119.99580 * 263.81806 * 6 5 3 8 8 H 1.08003 * 119.99743 * 197.05287 * 7 6 5 9 9 C 1.38954 * 120.00147 * 17.05042 * 7 6 5 10 10 N 1.31405 * 119.99609 * 20.54305 * 9 7 6 11 11 Si 1.86798 * 119.99997 * 200.53966 * 9 7 6 12 12 H 1.48504 * 109.46992 * 59.99966 * 11 9 7 13 13 H 1.48502 * 109.46865 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47318 * 300.00156 * 11 9 7 15 15 C 1.34776 * 120.00373 * 84.10194 * 6 5 3 16 16 O 1.21290 * 119.99580 * 359.71526 * 15 6 5 17 17 C 1.50697 * 119.99926 * 179.72364 * 15 6 5 18 18 C 1.53004 * 109.46869 * 179.97438 * 17 15 6 19 19 C 1.53003 * 109.47175 * 299.99802 * 18 17 15 20 20 C 1.52995 * 109.47188 * 59.99805 * 18 17 15 21 21 C 1.52999 * 109.47187 * 179.97438 * 18 17 15 22 22 C 1.52995 * 117.50248 * 248.75058 * 21 18 17 23 23 C 1.52995 * 117.49988 * 180.08617 * 21 18 17 24 24 H 1.09005 * 109.46698 * 59.99896 * 1 2 3 25 25 H 1.08997 * 109.47178 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47189 * 299.99625 * 1 2 3 27 27 H 1.09001 * 109.46653 * 60.00194 * 5 3 2 28 28 H 1.09000 * 109.46875 * 300.00149 * 5 3 2 29 29 H 0.97003 * 120.00010 * 180.02562 * 10 9 7 30 30 H 1.08994 * 109.47100 * 299.98957 * 17 15 6 31 31 H 1.08998 * 109.47632 * 59.99542 * 17 15 6 32 32 H 1.09001 * 109.46900 * 60.00000 * 19 18 17 33 33 H 1.08991 * 109.46924 * 179.97438 * 19 18 17 34 34 H 1.09001 * 109.46802 * 300.00321 * 19 18 17 35 35 H 1.09004 * 109.47586 * 59.99663 * 20 18 17 36 36 H 1.09002 * 109.47559 * 180.02562 * 20 18 17 37 37 H 1.09001 * 109.47198 * 300.00190 * 20 18 17 38 38 H 1.09006 * 115.54557 * 34.41763 * 21 18 17 39 39 H 1.09006 * 117.49927 * 359.97438 * 22 21 18 40 40 H 1.08993 * 117.50217 * 145.02169 * 22 21 18 41 41 H 1.09002 * 117.50035 * 214.98416 * 23 21 18 42 42 H 1.08997 * 117.49929 * 359.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9817 2.6796 0.0011 7 6 4.2991 3.3010 -1.1791 8 1 4.8588 4.2246 -1.1696 9 6 3.9007 2.7424 -2.3875 10 7 2.9097 1.8799 -2.4175 11 14 4.7737 3.2176 -3.9691 12 1 6.2120 2.8624 -3.8665 13 1 4.1633 2.4885 -5.1097 14 1 4.6395 4.6802 -4.1884 15 6 4.0573 3.3597 1.1622 16 8 3.7765 2.8099 2.2063 17 6 4.4906 4.8030 1.1633 18 6 4.4906 5.3344 2.5981 19 6 3.0809 5.2246 3.1826 20 6 5.4603 4.5102 3.4472 21 6 4.9311 6.7996 2.5993 22 6 6.2888 7.1287 3.2231 23 6 4.9983 7.5160 3.9495 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8899 27 1 3.9564 0.7805 -0.8892 28 1 3.9557 0.7808 0.8908 29 1 2.6318 1.4897 -3.2610 30 1 5.4947 4.8812 0.7466 31 1 3.7995 5.3903 0.5587 32 1 2.7675 4.1806 3.1818 33 1 3.0810 5.6027 4.2049 34 1 2.3900 5.8118 2.5776 35 1 6.4647 4.5883 3.0308 36 1 5.4601 4.8884 4.4695 37 1 5.1470 3.4662 3.4464 38 1 4.6196 7.3848 1.7340 39 1 6.8681 6.3013 3.6330 40 1 6.8704 7.9306 2.7685 41 1 4.7314 8.5726 3.9726 42 1 4.7283 6.9436 4.8369 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340560607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:40 Heat of formation + Delta-G solvation = -103.391587 kcal Electronic energy + Delta-G solvation = -23937.342930 eV Core-core repulsion = 20497.473662 eV Total energy + Delta-G solvation = -3439.869267 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.45257 -40.65632 -39.13285 -37.26455 -36.51947 -34.31010 -33.46528 -30.77681 -28.77195 -28.16812 -27.66181 -26.30804 -24.17005 -22.98088 -22.11249 -21.00890 -19.42419 -18.53111 -18.41230 -18.08579 -17.26114 -17.04561 -16.64829 -16.18236 -15.99970 -15.77310 -15.36964 -14.65039 -14.44246 -14.24244 -14.11404 -14.08227 -13.43830 -13.20081 -13.05198 -12.91257 -12.68299 -12.52079 -12.48781 -12.38818 -12.17506 -12.05617 -11.83501 -11.70866 -11.57192 -11.52221 -11.37536 -11.02671 -10.89171 -10.63710 -10.05790 -9.80680 -8.35852 -5.90287 1.44082 1.50120 1.59306 1.71846 1.83421 2.28315 2.35603 2.88441 3.05752 3.15752 3.84537 3.94263 4.11127 4.22225 4.26732 4.34445 4.35179 4.40245 4.41430 4.49518 4.63505 4.68640 4.70685 4.81382 4.85635 4.91218 4.91948 4.94524 5.09261 5.19309 5.21995 5.25837 5.38423 5.41936 5.50869 5.60882 5.66304 5.69444 5.88893 6.36610 7.11057 7.23808 7.55311 7.97137 8.71375 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015442 B = 0.006333 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.755788 B = 4420.066247 C = 5755.887926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.378 6.378 3 C 0.486 3.514 4 O -0.538 6.538 5 C 0.155 3.845 6 N -0.446 5.446 7 C -0.351 4.351 8 H 0.114 0.886 9 C -0.006 4.006 10 N -0.899 5.899 11 Si 0.993 3.007 12 H -0.261 1.261 13 H -0.288 1.288 14 H -0.270 1.270 15 C 0.464 3.536 16 O -0.608 6.608 17 C -0.099 4.099 18 C -0.010 4.010 19 C -0.138 4.138 20 C -0.143 4.143 21 C -0.156 4.156 22 C -0.175 4.175 23 C -0.171 4.171 24 H 0.044 0.956 25 H 0.134 0.866 26 H 0.050 0.950 27 H 0.118 0.882 28 H 0.090 0.910 29 H 0.270 0.730 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.035 0.965 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.892 3.705 5.162 7.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.295 6.295 3 C 0.329 3.671 4 O -0.426 6.426 5 C 0.029 3.971 6 N -0.165 5.165 7 C -0.478 4.478 8 H 0.132 0.868 9 C -0.207 4.207 10 N -0.538 5.538 11 Si 0.817 3.183 12 H -0.186 1.186 13 H -0.214 1.214 14 H -0.195 1.195 15 C 0.256 3.744 16 O -0.496 6.496 17 C -0.139 4.139 18 C -0.011 4.011 19 C -0.196 4.196 20 C -0.200 4.200 21 C -0.174 4.174 22 C -0.212 4.212 23 C -0.208 4.208 24 H 0.063 0.937 25 H 0.152 0.848 26 H 0.069 0.931 27 H 0.136 0.864 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.418 3.614 5.510 7.423 hybrid contribution -0.502 0.062 -1.233 1.332 sum 2.915 3.675 4.277 6.348 Atomic orbital electron populations 1.23278 0.76293 1.04823 1.01115 1.86425 1.24059 1.33971 1.85064 1.24165 0.92722 0.80697 0.69480 1.90478 1.67376 1.37695 1.47021 1.20493 0.86899 0.86210 1.03535 1.43687 1.57621 1.08354 1.06824 1.19982 1.34578 1.10585 0.82644 0.86835 1.26074 0.95111 0.97058 1.02455 1.69947 1.23998 1.31469 1.28358 0.84987 0.78668 0.78361 0.76308 1.18612 1.21371 1.19474 1.20877 0.80990 0.89665 0.82872 1.90389 1.55877 1.71211 1.32086 1.21406 1.02434 0.91804 0.98218 1.19697 0.95649 0.92791 0.92937 1.21917 0.95821 1.01912 0.99910 1.22068 0.98012 1.01100 0.98803 1.22263 1.02278 0.94993 0.97852 1.23195 0.90518 1.03644 1.03849 1.22968 1.01814 1.00892 0.95094 0.93722 0.84795 0.93145 0.86397 0.89251 0.91978 0.89069 0.90897 0.92915 0.92111 0.94609 0.92519 0.92324 0.92299 0.88127 0.88160 0.87863 0.87815 0.89041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.33 10.56 113.37 1.20 2.53 16 2 O -0.38 -16.53 10.56 -51.35 -0.54 -17.07 16 3 C 0.49 24.70 6.14 71.24 0.44 25.13 16 4 O -0.54 -30.78 15.79 21.97 0.35 -30.44 16 5 C 0.15 7.54 5.13 85.64 0.44 7.98 16 6 N -0.45 -22.38 2.18 -639.59 -1.39 -23.77 16 7 C -0.35 -17.43 9.15 84.04 0.77 -16.66 16 8 H 0.11 5.23 6.55 -2.91 -0.02 5.21 16 9 C -0.01 -0.27 4.90 84.93 0.42 0.14 16 10 N -0.90 -46.96 9.25 21.66 0.20 -46.76 16 11 Si 0.99 38.87 29.60 68.60 2.03 40.90 16 12 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 13 H -0.29 -11.37 7.11 99.48 0.71 -10.66 16 14 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 15 C 0.46 22.07 6.83 87.66 0.60 22.67 16 16 O -0.61 -30.43 11.03 -3.06 -0.03 -30.46 16 17 C -0.10 -3.89 3.20 29.85 0.10 -3.79 16 18 C -0.01 -0.34 0.62 -52.18 -0.03 -0.38 16 19 C -0.14 -5.04 8.02 71.98 0.58 -4.46 16 20 C -0.14 -4.61 6.77 71.98 0.49 -4.12 16 21 C -0.16 -4.18 5.14 -10.80 -0.06 -4.23 16 22 C -0.18 -3.85 9.57 30.62 0.29 -3.56 16 23 C -0.17 -3.77 9.39 30.62 0.29 -3.48 16 24 H 0.04 1.63 8.13 -2.38 -0.02 1.61 16 25 H 0.13 3.27 8.14 -2.39 -0.02 3.25 16 26 H 0.05 1.73 8.13 -2.39 -0.02 1.71 16 27 H 0.12 5.76 6.36 -2.39 -0.02 5.74 16 28 H 0.09 4.08 7.61 -2.39 -0.02 4.06 16 29 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 30 H 0.09 3.31 7.69 -2.39 -0.02 3.29 16 31 H 0.07 2.99 8.10 -2.39 -0.02 2.98 16 32 H 0.05 2.31 5.51 -2.39 -0.01 2.30 16 33 H 0.06 1.89 7.29 -2.39 -0.02 1.88 16 34 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 1.66 6.97 -2.38 -0.02 1.65 16 36 H 0.06 1.65 7.07 -2.39 -0.02 1.63 16 37 H 0.06 2.29 5.51 -2.39 -0.01 2.28 16 38 H 0.10 2.69 8.11 -2.38 -0.02 2.67 16 39 H 0.10 2.21 5.85 -2.38 -0.01 2.20 16 40 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.09 2.04 7.07 -2.39 -0.02 2.02 16 Total: -1.00 -63.85 331.99 7.14 -56.72 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: 1.02 Total: 33.10 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: 5.51 Total: 17.77 kcal Atomic # 7 Polarization: -69.34 SS G_CDS: -1.19 Total: -70.53 kcal Atomic # 8 Polarization: -77.74 SS G_CDS: -0.23 Total: -77.97 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Total: -63.85 7.14 -56.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340560607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.674 kcal (2) G-P(sol) polarization free energy of solvation -63.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds