Wall clock time and date at job start Tue Mar 31 2020 06:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 117.00137 * 2 1 4 4 O 1.20833 * 119.99852 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00432 * 179.71953 * 3 2 1 6 6 H 1.09006 * 115.54585 * 34.69716 * 5 3 2 7 7 C 1.53002 * 117.50414 * 249.02643 * 5 3 2 8 8 C 1.52997 * 117.50207 * 180.36312 * 5 3 2 9 9 H 1.08998 * 117.49905 * 359.97438 * 8 5 3 10 10 C 1.50706 * 117.49963 * 214.98209 * 8 5 3 11 11 O 1.21284 * 119.99717 * 0.02562 * 10 8 5 12 12 N 1.34776 * 119.99968 * 179.97438 * 10 8 5 13 13 C 1.46505 * 119.99786 * 180.02562 * 12 10 8 14 14 C 1.53000 * 109.46612 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47119 * 299.99776 * 14 13 12 16 16 C 1.53002 * 109.47102 * 60.00130 * 14 13 12 17 17 C 1.53005 * 109.46545 * 179.97438 * 14 13 12 18 18 C 1.50706 * 109.46634 * 180.02562 * 17 14 13 19 19 H 1.07995 * 120.00354 * 0.02562 * 18 17 14 20 20 C 1.37881 * 119.99733 * 180.02562 * 18 17 14 21 21 N 1.31516 * 119.99775 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00096 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46931 * 59.99723 * 22 20 18 24 24 H 1.48493 * 109.47035 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46959 * 300.00309 * 22 20 18 26 26 H 1.08997 * 109.47403 * 60.00337 * 1 2 3 27 27 H 1.09007 * 109.47110 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47380 * 299.99656 * 1 2 3 29 29 H 1.08995 * 117.49660 * 359.97438 * 7 5 3 30 30 H 1.08997 * 117.49791 * 145.01695 * 7 5 3 31 31 H 0.96994 * 120.00065 * 0.02562 * 12 10 8 32 32 H 1.09001 * 109.46749 * 300.00059 * 13 12 10 33 33 H 1.08998 * 109.46859 * 60.00113 * 13 12 10 34 34 H 1.08999 * 109.46825 * 60.00679 * 15 14 13 35 35 H 1.09008 * 109.46693 * 180.02562 * 15 14 13 36 36 H 1.08996 * 109.47290 * 300.00168 * 15 14 13 37 37 H 1.08999 * 109.47147 * 60.00023 * 16 14 13 38 38 H 1.09007 * 109.46614 * 179.97438 * 16 14 13 39 39 H 1.08994 * 109.47102 * 299.99658 * 16 14 13 40 40 H 1.09003 * 109.47175 * 299.99506 * 17 14 13 41 41 H 1.08996 * 109.47370 * 60.00134 * 17 14 13 42 42 H 0.97003 * 119.99546 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0064 6 1 4.0805 0.4908 -0.5495 7 6 4.2409 1.7998 1.2754 8 6 4.2007 2.6671 0.0147 9 1 3.5296 3.5260 0.0151 10 6 5.4890 2.8493 -0.7458 11 8 5.9835 1.9112 -1.3345 12 7 6.0910 4.0548 -0.7726 13 6 7.3431 4.2320 -1.5123 14 6 7.8115 5.6827 -1.3818 15 6 6.7439 6.6168 -1.9550 16 6 8.0399 6.0140 0.0943 17 6 9.1195 5.8676 -2.1539 18 6 9.5812 7.2963 -2.0248 19 1 9.0001 8.0017 -1.4494 20 6 10.7455 7.7029 -2.6414 21 7 11.4533 6.8437 -3.3418 22 14 11.3175 9.4740 -2.4821 23 1 11.5390 9.7956 -1.0494 24 1 12.5869 9.6534 -3.2313 25 1 10.2813 10.3808 -3.0384 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 3.5962 2.0884 2.1055 30 1 5.1991 1.3613 1.5541 31 1 5.6953 4.8050 -0.3021 32 1 8.1037 3.5667 -1.1037 33 1 7.1804 3.9955 -2.5638 34 1 5.8124 6.4849 -1.4045 35 1 7.0779 7.6503 -1.8624 36 1 6.5812 6.3808 -3.0065 37 1 8.8005 5.3485 0.5026 38 1 8.3741 7.0474 0.1872 39 1 7.1084 5.8821 0.6446 40 1 9.8799 5.2021 -1.7451 41 1 8.9572 5.6314 -3.2055 42 1 12.2726 7.1297 -3.7753 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345876328.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:32 Heat of formation + Delta-G solvation = -115.406237 kcal Electronic energy + Delta-G solvation = -22022.200606 eV Core-core repulsion = 18581.810344 eV Total energy + Delta-G solvation = -3440.390262 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.03403 -39.79512 -37.65780 -36.89511 -35.83568 -33.64196 -32.09249 -28.64403 -27.31433 -26.72462 -26.52850 -24.93590 -23.95391 -22.53121 -20.89820 -20.01319 -18.60673 -18.04791 -17.22808 -16.68344 -16.58410 -16.27544 -15.57985 -15.17832 -14.53714 -14.39781 -14.23362 -13.61349 -13.58792 -13.19373 -12.96171 -12.79850 -12.61772 -12.35603 -12.16173 -12.06521 -11.21699 -11.17003 -11.14204 -11.02061 -10.95752 -10.88077 -10.79328 -10.64309 -10.42511 -10.28137 -9.89639 -9.89094 -9.19115 -8.95142 -8.79505 -8.36621 -6.00793 -4.02218 1.70430 2.18540 2.52374 3.30232 3.31533 3.37057 3.38617 3.52901 4.20418 4.37433 4.43986 4.49520 4.74043 4.76917 4.82527 4.94823 5.15348 5.23767 5.34562 5.46558 5.57583 5.59153 5.61096 5.73302 5.99867 6.15129 6.20010 6.25010 6.36711 6.51908 6.61416 6.72678 7.04089 7.05831 7.10378 7.39612 7.61993 7.66731 7.74569 7.97593 8.31605 8.39807 9.02267 9.60874 11.10585 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.046863 B = 0.002671 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.343709 B =10478.660667 C =10633.117473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.353 6.353 3 C 0.495 3.505 4 O -0.506 6.506 5 C -0.140 4.140 6 H 0.151 0.849 7 C -0.115 4.115 8 C -0.154 4.154 9 H 0.138 0.862 10 C 0.537 3.463 11 O -0.543 6.543 12 N -0.712 5.712 13 C 0.128 3.872 14 C -0.072 4.072 15 C -0.128 4.128 16 C -0.128 4.128 17 C 0.036 3.964 18 C -0.512 4.512 19 H 0.059 0.941 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.890 3.110 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.278 1.278 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.401 0.599 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.029 0.971 35 H 0.067 0.933 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.029 0.971 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.794 -10.747 9.698 23.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.269 6.269 3 C 0.338 3.662 4 O -0.394 6.394 5 C -0.160 4.160 6 H 0.168 0.832 7 C -0.153 4.153 8 C -0.175 4.175 9 H 0.156 0.844 10 C 0.322 3.678 11 O -0.421 6.421 12 N -0.363 5.363 13 C 0.005 3.995 14 C -0.073 4.073 15 C -0.185 4.185 16 C -0.185 4.185 17 C -0.001 4.001 18 C -0.550 4.550 19 H 0.077 0.923 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.718 3.282 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 H 0.083 0.917 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.130 0.870 30 H 0.137 0.863 31 H 0.236 0.764 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.048 0.952 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.485 -11.127 9.149 23.435 hybrid contribution -0.038 1.406 0.110 1.411 sum -18.523 -9.720 9.259 22.876 Atomic orbital electron populations 1.23315 0.75976 1.03885 1.02694 1.86494 1.23561 1.32929 1.83896 1.22557 0.90306 0.81357 0.71977 1.90679 1.66878 1.36402 1.45399 1.21657 0.88184 1.00103 1.06012 0.83157 1.23108 1.02762 0.99339 0.90057 1.22383 0.98078 0.95337 1.01744 0.84422 1.19376 0.84439 0.83269 0.80733 1.90713 1.65751 1.40461 1.45128 1.46098 1.26063 1.11040 1.53102 1.21685 0.83698 0.98268 0.95853 1.20911 0.98772 0.90826 0.96780 1.21772 0.95939 1.01073 0.99755 1.21769 0.98988 1.02916 0.94815 1.19092 0.89112 0.97219 0.94719 1.21140 1.07158 0.95272 1.31445 0.92303 1.25019 0.96837 0.97208 0.95458 1.69956 1.15664 1.34316 1.33436 0.86700 0.78009 0.85420 0.78100 1.20331 1.21408 1.20328 0.91725 0.87878 0.91785 0.86971 0.86285 0.76364 0.91632 0.91652 0.95183 0.91378 0.93336 0.93336 0.91389 0.95177 0.96320 0.96324 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.35 -3.43 10.56 -39.24 -0.41 -3.84 16 3 C 0.49 5.45 7.74 36.00 0.28 5.73 16 4 O -0.51 -6.63 16.01 -18.76 -0.30 -6.93 16 5 C -0.14 -1.44 5.81 -91.77 -0.53 -1.98 16 6 H 0.15 1.61 7.67 -51.93 -0.40 1.21 16 7 C -0.12 -0.96 9.94 -26.69 -0.27 -1.23 16 8 C -0.15 -1.66 5.70 -91.73 -0.52 -2.19 16 9 H 0.14 1.38 7.67 -51.93 -0.40 0.99 16 10 C 0.54 7.65 7.61 -10.98 -0.08 7.56 16 11 O -0.54 -9.69 16.26 5.55 0.09 -9.60 16 12 N -0.71 -9.97 4.96 -60.29 -0.30 -10.27 16 13 C 0.13 2.19 4.56 -4.04 -0.02 2.18 16 14 C -0.07 -1.34 0.54 -154.51 -0.08 -1.43 16 15 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 16 C -0.13 -2.17 8.05 37.16 0.30 -1.88 16 17 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 18 C -0.51 -13.45 7.65 -34.44 -0.26 -13.72 16 19 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 20 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 21 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 22 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 27 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 29 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.12 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.40 4.74 6.16 -40.82 -0.25 4.49 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 35 H 0.07 1.27 6.62 -51.92 -0.34 0.93 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.26 6.61 -51.93 -0.34 0.91 16 39 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 349.64 15.07 5.27 5.27 Total: -1.00 -32.17 349.64 -6.51 -38.67 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -6.53 Total: 1.53 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -0.04 Total: -5.36 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.44 Total: -35.80 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.62 Total: -20.38 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.17 -6.51 -38.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345876328.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.733 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds