Wall clock time and date at job start Tue Mar 31 2020 06:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34226 * 117.00338 * 2 1 4 4 O 1.20824 * 119.99994 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00163 * 179.97438 * 3 2 1 6 6 H 1.09001 * 115.54754 * 325.67366 * 5 3 2 7 7 C 1.53068 * 117.51164 * 111.39235 * 5 3 2 8 8 C 1.52997 * 117.50095 * 180.02562 * 5 3 2 9 9 H 1.09003 * 117.49527 * 359.97438 * 8 5 3 10 10 C 1.50701 * 117.49965 * 144.99976 * 8 5 3 11 11 O 1.21280 * 119.99781 * 359.90787 * 10 8 5 12 12 N 1.34771 * 119.99622 * 179.91463 * 10 8 5 13 13 C 1.46505 * 119.99622 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.47212 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.47127 * 300.00138 * 14 13 12 16 16 C 1.52999 * 109.47317 * 59.99649 * 14 13 12 17 17 C 1.52992 * 109.47482 * 179.97438 * 14 13 12 18 18 C 1.50698 * 109.47592 * 179.97438 * 17 14 13 19 19 H 1.08003 * 120.00057 * 0.02562 * 18 17 14 20 20 C 1.37876 * 120.00356 * 179.97438 * 18 17 14 21 21 N 1.31511 * 120.00113 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99923 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47375 * 89.99678 * 22 20 18 24 24 H 1.48508 * 109.47196 * 209.99673 * 22 20 18 25 25 H 1.48504 * 109.47051 * 329.99297 * 22 20 18 26 26 H 1.08994 * 109.47750 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47306 * 300.00394 * 1 2 3 28 28 H 1.09005 * 109.46552 * 59.99453 * 1 2 3 29 29 H 1.08997 * 117.49642 * 359.97438 * 7 5 3 30 30 H 1.09004 * 117.51412 * 214.95753 * 7 5 3 31 31 H 0.96996 * 120.00772 * 359.97438 * 12 10 8 32 32 H 1.09002 * 109.47068 * 299.99729 * 13 12 10 33 33 H 1.09001 * 109.47372 * 59.99816 * 13 12 10 34 34 H 1.08993 * 109.46955 * 60.00011 * 15 14 13 35 35 H 1.09000 * 109.47050 * 179.97438 * 15 14 13 36 36 H 1.09001 * 109.47002 * 299.99574 * 15 14 13 37 37 H 1.09002 * 109.46716 * 60.00091 * 16 14 13 38 38 H 1.09000 * 109.47486 * 180.02562 * 16 14 13 39 39 H 1.09001 * 109.47362 * 300.00732 * 16 14 13 40 40 H 1.09002 * 109.47103 * 300.00247 * 17 14 13 41 41 H 1.09001 * 109.47066 * 60.00169 * 17 14 13 42 42 H 0.97008 * 120.00167 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 4.0781 0.4884 0.5555 7 6 4.2471 1.8060 -1.2633 8 6 4.2010 2.6669 0.0012 9 1 3.5298 3.5259 0.0007 10 6 5.4856 2.8458 0.7684 11 8 5.9767 1.9056 1.3564 12 7 6.0887 4.0506 0.8012 13 6 7.3373 4.2246 1.5475 14 6 7.8080 5.6751 1.4231 15 6 8.0440 6.0100 -0.0511 16 6 6.7385 6.6090 1.9933 17 6 9.1115 5.8570 2.2030 18 6 9.5754 7.2856 2.0800 19 1 8.9980 7.9931 1.5035 20 6 10.7365 7.6896 2.7042 21 7 11.1416 8.9361 2.5964 22 14 11.7350 6.4661 3.7019 23 1 12.7319 5.8058 2.8214 24 1 12.4383 7.1786 4.7988 25 1 10.8284 5.4411 4.2789 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5140 -0.8900 29 1 3.6062 2.0980 -2.0952 30 1 5.2067 1.3692 -1.5399 31 1 5.6962 4.8025 0.3307 32 1 7.1692 3.9856 2.5977 33 1 8.0994 3.5596 1.1410 34 1 7.1151 5.8806 -0.6063 35 1 8.3789 7.0435 -0.1397 36 1 8.8059 5.3448 -0.4573 37 1 6.5704 6.3704 3.0435 38 1 7.0736 7.6424 1.9042 39 1 5.8095 6.4795 1.4380 40 1 8.9429 5.6186 3.2532 41 1 9.8736 5.1918 1.7972 42 1 11.9583 9.2205 3.0359 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345876329.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:36 Heat of formation + Delta-G solvation = -111.926930 kcal Electronic energy + Delta-G solvation = -22072.084320 eV Core-core repulsion = 18631.844932 eV Total energy + Delta-G solvation = -3440.239388 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.06709 -39.86300 -37.74714 -36.96137 -35.88333 -33.69980 -32.11053 -28.68375 -27.92588 -26.88188 -26.57751 -24.96215 -23.92984 -22.21851 -20.91401 -20.07528 -18.63551 -18.03640 -17.25809 -16.95791 -16.69703 -16.47520 -15.71038 -15.25473 -14.49348 -14.41100 -14.02374 -13.72107 -13.62332 -13.51640 -13.02040 -12.75968 -12.68729 -12.42724 -12.30223 -12.26823 -11.28583 -11.19996 -11.19319 -11.14931 -11.02373 -11.00063 -10.82429 -10.63478 -10.51599 -10.01462 -9.99296 -9.75830 -9.48234 -9.01217 -8.88611 -8.54696 -6.05291 -4.02704 1.67249 2.15486 2.46400 3.23676 3.30684 3.38896 3.42691 3.48147 4.16469 4.33575 4.44623 4.44760 4.71586 4.73204 4.80425 4.89671 5.13240 5.20199 5.27078 5.34998 5.49522 5.53499 5.55908 5.61904 5.97349 6.07925 6.08940 6.14488 6.29017 6.43222 6.57695 6.64749 6.87402 6.99879 7.03327 7.17982 7.34553 7.36905 7.57878 7.77657 8.24391 8.51597 8.98675 9.57284 11.07377 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.041084 B = 0.002818 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.368401 B = 9933.574220 C =10152.030408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.353 6.353 3 C 0.495 3.505 4 O -0.505 6.505 5 C -0.140 4.140 6 H 0.151 0.849 7 C -0.115 4.115 8 C -0.154 4.154 9 H 0.139 0.861 10 C 0.538 3.462 11 O -0.543 6.543 12 N -0.712 5.712 13 C 0.125 3.875 14 C -0.063 4.063 15 C -0.129 4.129 16 C -0.130 4.130 17 C -0.002 4.002 18 C -0.511 4.511 19 H 0.078 0.922 20 C 0.066 3.934 21 N -0.903 5.903 22 Si 0.875 3.125 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.265 1.265 26 H 0.103 0.897 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.402 0.598 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.032 0.968 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.032 0.968 40 H 0.018 0.982 41 H 0.014 0.986 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.358 -15.524 -8.111 25.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.269 6.269 3 C 0.338 3.662 4 O -0.393 6.393 5 C -0.159 4.159 6 H 0.168 0.832 7 C -0.152 4.152 8 C -0.176 4.176 9 H 0.156 0.844 10 C 0.323 3.677 11 O -0.421 6.421 12 N -0.363 5.363 13 C 0.002 3.998 14 C -0.063 4.063 15 C -0.187 4.187 16 C -0.187 4.187 17 C -0.040 4.040 18 C -0.549 4.549 19 H 0.096 0.904 20 C -0.135 4.135 21 N -0.543 5.543 22 Si 0.703 3.297 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.190 1.190 26 H 0.121 0.879 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.131 0.869 30 H 0.137 0.863 31 H 0.238 0.762 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.037 0.963 41 H 0.032 0.968 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.078 -15.764 -7.616 25.166 hybrid contribution 0.212 -0.103 0.466 0.523 sum -17.865 -15.867 -7.150 24.941 Atomic orbital electron populations 1.23317 0.75944 1.03893 1.02714 1.86493 1.23585 1.32917 1.83898 1.22548 0.90292 0.81372 0.72014 1.90680 1.66869 1.36393 1.45353 1.21666 0.88201 1.00001 1.06068 0.83180 1.23117 1.02729 0.99299 0.90095 1.22371 0.98071 0.95450 1.01674 0.84354 1.19376 0.84398 0.83208 0.80706 1.90708 1.65809 1.40301 1.45312 1.46056 1.26189 1.11123 1.52907 1.21694 0.84084 0.98188 0.95798 1.20694 0.97776 0.90975 0.96893 1.21784 0.99150 1.03399 0.94335 1.21785 0.95888 1.01416 0.99613 1.19594 0.91261 0.98228 0.94923 1.21072 1.08077 0.93688 1.32046 0.90382 1.25004 0.97386 0.94963 0.96132 1.69902 1.23665 1.16156 1.44533 0.86855 0.80660 0.81851 0.80372 1.20378 1.21506 1.18994 0.87872 0.91711 0.91772 0.86912 0.86300 0.76195 0.91662 0.91648 0.94933 0.90827 0.93373 0.93369 0.90812 0.94944 0.96345 0.96789 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.29 16 2 O -0.35 -3.34 10.56 -39.25 -0.41 -3.76 16 3 C 0.49 5.31 7.74 36.01 0.28 5.58 16 4 O -0.51 -6.51 16.01 -18.75 -0.30 -6.81 16 5 C -0.14 -1.39 5.81 -91.74 -0.53 -1.92 16 6 H 0.15 1.54 7.67 -51.93 -0.40 1.15 16 7 C -0.11 -0.92 9.95 -26.67 -0.27 -1.19 16 8 C -0.15 -1.60 5.70 -91.75 -0.52 -2.12 16 9 H 0.14 1.34 7.67 -51.93 -0.40 0.94 16 10 C 0.54 7.34 7.61 -10.99 -0.08 7.25 16 11 O -0.54 -9.31 16.26 5.56 0.09 -9.22 16 12 N -0.71 -9.50 4.96 -60.29 -0.30 -9.80 16 13 C 0.13 2.03 4.56 -4.04 -0.02 2.01 16 14 C -0.06 -1.12 0.54 -154.51 -0.08 -1.20 16 15 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 16 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 17 C 0.00 -0.05 3.11 -27.89 -0.09 -0.14 16 18 C -0.51 -13.53 8.20 -34.44 -0.28 -13.81 16 19 H 0.08 2.19 5.92 -52.48 -0.31 1.88 16 20 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 21 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 22 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 26 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 28 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 29 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.40 4.55 6.16 -40.82 -0.25 4.30 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 35 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.07 1.42 6.62 -51.93 -0.34 1.07 16 39 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 40 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 41 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 346.04 15.07 5.21 5.21 Total: -1.00 -32.51 346.04 -6.13 -38.64 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.50 Total: 1.59 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -0.03 Total: -6.27 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.47 Total: -36.10 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.62 Total: -19.78 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.51 -6.13 -38.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345876329.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.283 kcal (2) G-P(sol) polarization free energy of solvation -32.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds