Wall clock time and date at job start Tue Mar 31 2020 06:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34234 * 116.99945 * 2 1 4 4 O 1.20826 * 119.99681 * 359.97438 * 3 2 1 5 5 C 1.50690 * 119.99955 * 180.02562 * 3 2 1 6 6 H 1.09002 * 115.55509 * 297.65868 * 5 3 2 7 7 C 1.53008 * 117.51981 * 151.96038 * 5 3 2 8 8 C 1.53006 * 117.50162 * 83.33025 * 5 3 2 9 9 H 1.09004 * 117.49905 * 215.02470 * 8 5 3 10 10 C 1.50696 * 117.49549 * 0.02562 * 8 5 3 11 11 O 1.21281 * 119.99993 * 91.91549 * 10 8 5 12 12 N 1.34776 * 120.00169 * 271.91059 * 10 8 5 13 13 C 1.46500 * 120.00252 * 180.02562 * 12 10 8 14 14 C 1.53000 * 109.46981 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47314 * 60.00115 * 14 13 12 16 16 C 1.52995 * 109.47458 * 299.99854 * 14 13 12 17 17 C 1.53006 * 109.46930 * 179.97438 * 14 13 12 18 18 C 1.50694 * 109.47157 * 180.02562 * 17 14 13 19 19 H 1.08004 * 119.99987 * 359.97438 * 18 17 14 20 20 C 1.37877 * 120.00399 * 180.02562 * 18 17 14 21 21 N 1.31518 * 119.99574 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00276 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47367 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.46732 * 239.99952 * 22 20 18 25 25 H 1.48500 * 109.47173 * 120.00349 * 22 20 18 26 26 H 1.09001 * 109.46731 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47288 * 299.99899 * 1 2 3 28 28 H 1.09006 * 109.47106 * 60.00087 * 1 2 3 29 29 H 1.08993 * 117.50165 * 145.03099 * 7 5 3 30 30 H 1.09002 * 117.49485 * 0.02562 * 7 5 3 31 31 H 0.97003 * 119.99740 * 0.02562 * 12 10 8 32 32 H 1.08995 * 109.47222 * 60.00192 * 13 12 10 33 33 H 1.08994 * 109.46976 * 299.99591 * 13 12 10 34 34 H 1.08998 * 109.47610 * 179.97438 * 15 14 13 35 35 H 1.09005 * 109.46704 * 299.99711 * 15 14 13 36 36 H 1.09001 * 109.47207 * 59.99163 * 15 14 13 37 37 H 1.09003 * 109.47192 * 300.00374 * 16 14 13 38 38 H 1.09005 * 109.47186 * 59.99905 * 16 14 13 39 39 H 1.09004 * 109.47221 * 180.02562 * 16 14 13 40 40 H 1.09003 * 109.46843 * 60.00163 * 17 14 13 41 41 H 1.09002 * 109.46832 * 299.99769 * 17 14 13 42 42 H 0.97001 * 119.99837 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 1 4.0600 0.8435 0.8701 7 6 4.2093 2.5081 -0.6385 8 6 4.2795 1.1547 -1.3489 9 1 5.2423 0.6439 -1.3652 10 6 3.4233 0.9672 -2.5747 11 8 3.0534 1.9321 -3.2094 12 7 3.0686 -0.2729 -2.9657 13 6 2.2367 -0.4553 -4.1577 14 6 1.9823 -1.9478 -4.3785 15 6 1.2617 -2.5281 -3.1600 16 6 3.3173 -2.6694 -4.5731 17 6 1.1129 -2.1382 -5.6231 18 6 0.8618 -3.6081 -5.8403 19 1 1.2808 -4.3340 -5.1590 20 6 0.0981 -4.0265 -6.9092 21 7 -0.4117 -3.1427 -7.7390 22 14 -0.2126 -5.8487 -7.1788 23 1 0.4667 -6.6296 -6.1139 24 1 0.3222 -6.2511 -8.5046 25 1 -1.6729 -6.1140 -7.1329 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 5.1260 2.8878 -0.1875 30 1 3.5438 3.2628 -1.0575 31 1 3.3643 -1.0447 -2.4578 32 1 2.7502 -0.0423 -5.0258 33 1 1.2858 0.0591 -4.0192 34 1 1.0801 -3.5913 -3.3175 35 1 1.8808 -2.3924 -2.2731 36 1 0.3107 -2.0140 -3.0213 37 1 3.8307 -2.2559 -5.4412 38 1 3.9364 -2.5337 -3.6862 39 1 3.1360 -3.7326 -4.7309 40 1 1.6259 -1.7247 -6.4914 41 1 0.1618 -1.6242 -5.4839 42 1 -0.2500 -2.1965 -7.5992 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345876330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:39 Heat of formation + Delta-G solvation = -116.862973 kcal Electronic energy + Delta-G solvation = -23264.482215 eV Core-core repulsion = 19824.028784 eV Total energy + Delta-G solvation = -3440.453431 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.98652 -39.65736 -37.65641 -36.77849 -35.96494 -33.79499 -32.16805 -28.33848 -27.04747 -26.63740 -26.59543 -24.94492 -23.90510 -22.49356 -20.89193 -20.05636 -18.75315 -18.04275 -17.18034 -16.84173 -16.53256 -16.07455 -15.51795 -15.41886 -14.67472 -14.25288 -13.91765 -13.62180 -13.55438 -13.29003 -13.15167 -12.82724 -12.35723 -12.27602 -12.16516 -11.79004 -11.25945 -11.19500 -11.12031 -11.05514 -11.03002 -10.92039 -10.66396 -10.61370 -10.27974 -10.13998 -10.01735 -9.91158 -9.45081 -8.84237 -8.48879 -8.32659 -6.34462 -4.03774 1.89954 2.38234 2.50531 3.11876 3.42327 3.46208 3.46671 3.58217 4.23486 4.31547 4.51338 4.53885 4.72109 4.93303 5.01461 5.11345 5.26364 5.34732 5.39214 5.41763 5.47843 5.52300 5.63707 5.77428 6.07893 6.11482 6.15835 6.20583 6.28829 6.44883 6.54159 6.65640 6.93318 6.96913 7.00919 7.32650 7.47258 7.54658 7.62048 8.20096 8.28760 8.46835 8.88827 9.67424 11.05476 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.025137 B = 0.004061 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.634630 B = 6893.263624 C = 7335.944366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.349 6.349 3 C 0.485 3.515 4 O -0.495 6.495 5 C -0.147 4.147 6 H 0.150 0.850 7 C -0.113 4.113 8 C -0.163 4.163 9 H 0.143 0.857 10 C 0.526 3.474 11 O -0.535 6.535 12 N -0.710 5.710 13 C 0.128 3.872 14 C -0.065 4.065 15 C -0.125 4.125 16 C -0.126 4.126 17 C 0.022 3.978 18 C -0.591 4.591 19 H 0.054 0.946 20 C 0.013 3.987 21 N -0.915 5.915 22 Si 1.071 2.929 23 H -0.290 1.290 24 H -0.288 1.288 25 H -0.288 1.288 26 H 0.105 0.895 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.402 0.598 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.033 0.967 36 H 0.044 0.956 37 H 0.046 0.954 38 H 0.031 0.969 39 H 0.069 0.931 40 H 0.008 0.992 41 H 0.008 0.992 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.480 5.009 17.810 20.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.265 6.265 3 C 0.327 3.673 4 O -0.382 6.382 5 C -0.166 4.166 6 H 0.167 0.833 7 C -0.150 4.150 8 C -0.184 4.184 9 H 0.161 0.839 10 C 0.311 3.689 11 O -0.412 6.412 12 N -0.361 5.361 13 C 0.005 3.995 14 C -0.065 4.065 15 C -0.182 4.182 16 C -0.184 4.184 17 C -0.015 4.015 18 C -0.629 4.629 19 H 0.073 0.927 20 C -0.190 4.190 21 N -0.552 5.552 22 Si 0.900 3.100 23 H -0.216 1.216 24 H -0.215 1.215 25 H -0.215 1.215 26 H 0.124 0.876 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.237 0.763 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.088 0.912 40 H 0.027 0.973 41 H 0.026 0.974 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.193 4.894 16.334 18.918 hybrid contribution 0.709 0.691 1.239 1.586 sum 8.902 5.585 17.573 20.475 Atomic orbital electron populations 1.23327 0.75680 1.04164 1.02531 1.86487 1.23788 1.32571 1.83628 1.22544 0.90372 0.81780 0.72612 1.90690 1.66638 1.36524 1.44347 1.21826 0.88588 1.07426 0.98760 0.83259 1.23125 1.02584 0.90506 0.98816 1.22462 1.01228 1.04396 0.90322 0.83943 1.19560 0.80552 0.83662 0.85150 1.90732 1.54978 1.39886 1.55616 1.46094 1.52649 1.07514 1.29839 1.21648 0.93895 0.97990 0.85980 1.20751 0.96765 0.90537 0.98476 1.21740 0.98884 1.02393 0.95215 1.21753 0.95359 1.02129 0.99116 1.19222 0.93473 0.98062 0.90743 1.22021 1.35465 0.91538 1.13892 0.92749 1.25784 0.93817 1.06353 0.93079 1.70713 1.43484 1.03261 1.37724 0.83513 0.76366 0.74390 0.75726 1.21564 1.21479 1.21484 0.87621 0.91976 0.91673 0.86165 0.86416 0.76264 0.91804 0.92103 0.91330 0.94766 0.93695 0.93485 0.95048 0.91234 0.97339 0.97378 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.47 16 2 O -0.35 -4.32 10.57 -39.27 -0.41 -4.74 16 3 C 0.49 6.37 6.64 36.00 0.24 6.61 16 4 O -0.50 -8.05 16.37 -18.75 -0.31 -8.35 16 5 C -0.15 -1.37 6.28 -91.77 -0.58 -1.95 16 6 H 0.15 0.85 8.14 -51.93 -0.42 0.42 16 7 C -0.11 -1.06 9.56 -26.72 -0.26 -1.31 16 8 C -0.16 -1.63 6.18 -91.77 -0.57 -2.19 16 9 H 0.14 0.94 8.14 -51.93 -0.42 0.52 16 10 C 0.53 7.85 6.54 -10.99 -0.07 7.78 16 11 O -0.54 -10.32 16.52 5.56 0.09 -10.23 16 12 N -0.71 -10.24 4.96 -60.30 -0.30 -10.54 16 13 C 0.13 2.26 4.56 -4.04 -0.02 2.24 16 14 C -0.06 -1.22 0.54 -154.51 -0.08 -1.30 16 15 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 16 C -0.13 -2.19 8.05 37.15 0.30 -1.89 16 17 C 0.02 0.54 3.35 -27.88 -0.09 0.45 16 18 C -0.59 -15.66 7.65 -34.44 -0.26 -15.92 16 19 H 0.05 1.40 5.68 -52.48 -0.30 1.10 16 20 C 0.01 0.37 5.46 -17.82 -0.10 0.28 16 21 N -0.92 -27.62 13.65 55.43 0.76 -26.86 16 22 Si 1.07 24.78 29.90 -169.99 -5.08 19.70 16 23 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 28 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 29 H 0.12 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.12 1.45 7.66 -51.93 -0.40 1.05 16 31 H 0.40 4.91 6.16 -40.82 -0.25 4.66 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 35 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 39 H 0.07 1.31 6.62 -51.93 -0.34 0.97 16 40 H 0.01 0.22 8.01 -51.93 -0.42 -0.20 16 41 H 0.01 0.21 8.01 -51.93 -0.42 -0.21 16 42 H 0.27 8.15 7.22 -40.82 -0.29 7.85 16 LS Contribution 347.81 15.07 5.24 5.24 Total: -1.00 -34.08 347.81 -6.63 -40.72 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.50 Total: 2.68 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -0.12 Total: -7.60 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.46 Total: -37.40 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.63 Total: -23.33 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.08 Total: 19.70 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.08 -6.63 -40.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345876330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.145 kcal (2) G-P(sol) polarization free energy of solvation -34.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds