Wall clock time and date at job start Tue Mar 31 2020 06:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 117.00281 * 2 1 4 4 O 1.20822 * 119.99396 * 0.02562 * 3 2 1 5 5 C 1.50692 * 120.00403 * 179.97438 * 3 2 1 6 6 H 1.08998 * 115.55013 * 276.50805 * 5 3 2 7 7 C 1.53008 * 117.49938 * 62.17177 * 5 3 2 8 8 C 1.53002 * 60.03128 * 107.50203 * 7 5 3 9 9 H 1.09000 * 117.49227 * 107.50327 * 8 7 5 10 10 C 1.50701 * 117.49975 * 252.52388 * 8 7 5 11 11 O 1.21281 * 120.00019 * 7.80037 * 10 8 7 12 12 N 1.34772 * 119.99729 * 187.80090 * 10 8 7 13 13 C 1.46501 * 119.99782 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.46996 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47119 * 299.99996 * 14 13 12 16 16 C 1.53001 * 109.47244 * 60.00162 * 14 13 12 17 17 C 1.53006 * 109.47165 * 180.02562 * 14 13 12 18 18 C 1.50696 * 109.47099 * 179.97438 * 17 14 13 19 19 H 1.07999 * 119.99782 * 0.02562 * 18 17 14 20 20 C 1.37872 * 119.99683 * 180.02562 * 18 17 14 21 21 N 1.31516 * 119.99998 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00293 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47296 * 90.00006 * 22 20 18 24 24 H 1.48501 * 109.47355 * 210.00092 * 22 20 18 25 25 H 1.48498 * 109.46990 * 330.00061 * 22 20 18 26 26 H 1.09002 * 109.47178 * 299.99863 * 1 2 3 27 27 H 1.08999 * 109.47083 * 59.99937 * 1 2 3 28 28 H 1.09006 * 109.47491 * 179.97438 * 1 2 3 29 29 H 1.08991 * 117.50015 * 215.00347 * 7 5 3 30 30 H 1.09000 * 117.49289 * 359.97438 * 7 5 3 31 31 H 0.97005 * 120.00275 * 0.02562 * 12 10 8 32 32 H 1.08999 * 109.47330 * 300.00210 * 13 12 10 33 33 H 1.08997 * 109.46868 * 60.00571 * 13 12 10 34 34 H 1.09004 * 109.47239 * 60.00035 * 15 14 13 35 35 H 1.09001 * 109.47023 * 179.97438 * 15 14 13 36 36 H 1.08997 * 109.47083 * 300.00321 * 15 14 13 37 37 H 1.08999 * 109.47066 * 59.99981 * 16 14 13 38 38 H 1.08997 * 109.46778 * 179.97438 * 16 14 13 39 39 H 1.09004 * 109.46896 * 299.99831 * 16 14 13 40 40 H 1.08998 * 109.46592 * 299.99899 * 17 14 13 41 41 H 1.09005 * 109.46701 * 59.99654 * 17 14 13 42 42 H 0.96999 * 120.00071 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0412 1.1884 0.9778 7 6 4.3054 0.6789 -1.1992 8 6 4.2265 2.1972 -1.0274 9 1 5.1357 2.7175 -0.7264 10 6 3.3215 2.9572 -1.9626 11 8 2.5846 2.3561 -2.7153 12 7 3.3312 4.3049 -1.9625 13 6 2.4519 5.0437 -2.8720 14 6 2.6581 6.5466 -2.6720 15 6 2.3249 6.9190 -1.2259 16 6 4.1156 6.9053 -2.9682 17 6 1.7393 7.3182 -3.6214 18 6 1.9419 8.7984 -3.4239 19 1 2.6549 9.1532 -2.6945 20 6 1.2169 9.6995 -4.1744 21 7 1.3940 10.9913 -4.0025 22 14 -0.0159 9.0858 -5.4365 23 1 -1.3457 8.9295 -4.7943 24 1 -0.1152 10.0650 -6.5484 25 1 0.4332 7.7748 -5.9701 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 5.2665 0.2005 -1.0113 30 1 3.7031 0.2294 -1.9887 31 1 3.9209 4.7857 -1.3608 32 1 2.6895 4.7787 -3.9023 33 1 1.4136 4.7879 -2.6612 34 1 2.9791 6.3692 -0.5491 35 1 2.4722 7.9895 -1.0832 36 1 1.2866 6.6634 -1.0148 37 1 4.3529 6.6400 -3.9984 38 1 4.2623 7.9760 -2.8261 39 1 4.7698 6.3556 -2.2915 40 1 1.9763 7.0530 -4.6517 41 1 0.7010 7.0625 -3.4099 42 1 0.8837 11.6253 -4.5302 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345876331.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:42 Heat of formation + Delta-G solvation = -108.106728 kcal Electronic energy + Delta-G solvation = -22843.619508 eV Core-core repulsion = 19403.545777 eV Total energy + Delta-G solvation = -3440.073731 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.96344 -39.59678 -37.60806 -36.60517 -36.03333 -33.60829 -32.06436 -28.40043 -27.87141 -26.78233 -26.51647 -24.90638 -23.85045 -22.08507 -21.05053 -19.95751 -18.47045 -17.79002 -17.21484 -16.88192 -16.65223 -16.13734 -15.40307 -15.21493 -14.79110 -14.23810 -13.88136 -13.61627 -13.51910 -13.25556 -13.11837 -12.68184 -12.44911 -12.27046 -12.25318 -12.20861 -11.22987 -11.15554 -11.10872 -10.98791 -10.94375 -10.92545 -10.58859 -10.56965 -10.45708 -9.94043 -9.93214 -9.71914 -9.41837 -8.96902 -8.75369 -8.51514 -6.02420 -3.99421 1.99927 2.26748 2.63926 3.25942 3.33387 3.40993 3.45576 3.50320 4.31416 4.35893 4.44028 4.47651 4.77369 4.90744 4.94806 5.04907 5.24476 5.30487 5.33075 5.39221 5.45999 5.57307 5.67232 5.70060 6.13552 6.18006 6.21568 6.23309 6.36710 6.52521 6.63562 6.73718 6.93626 7.04778 7.08573 7.23228 7.39800 7.59666 7.68855 7.81925 8.37205 8.55183 9.01708 9.60504 11.10360 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.025002 B = 0.003747 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.653973 B = 7470.867738 C = 7932.704505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.489 3.511 4 O -0.486 6.486 5 C -0.136 4.136 6 H 0.152 0.848 7 C -0.122 4.122 8 C -0.162 4.162 9 H 0.137 0.863 10 C 0.539 3.461 11 O -0.546 6.546 12 N -0.708 5.708 13 C 0.128 3.872 14 C -0.063 4.063 15 C -0.128 4.128 16 C -0.128 4.128 17 C -0.002 4.002 18 C -0.510 4.510 19 H 0.078 0.922 20 C 0.067 3.933 21 N -0.904 5.904 22 Si 0.874 3.126 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.266 1.266 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.400 0.600 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.031 0.969 40 H 0.018 0.982 41 H 0.013 0.987 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.290 -21.972 9.479 24.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.330 3.670 4 O -0.371 6.371 5 C -0.155 4.155 6 H 0.170 0.830 7 C -0.159 4.159 8 C -0.183 4.183 9 H 0.155 0.845 10 C 0.324 3.676 11 O -0.424 6.424 12 N -0.358 5.358 13 C 0.005 3.995 14 C -0.063 4.063 15 C -0.185 4.185 16 C -0.185 4.185 17 C -0.040 4.040 18 C -0.548 4.548 19 H 0.096 0.904 20 C -0.134 4.134 21 N -0.544 5.544 22 Si 0.702 3.298 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.190 1.190 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.119 0.881 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.235 0.765 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.036 0.964 41 H 0.032 0.968 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.442 -21.892 8.853 24.233 hybrid contribution -0.663 0.226 -0.318 0.769 sum 4.778 -21.666 8.535 23.771 Atomic orbital electron populations 1.23280 0.76057 1.03588 1.02824 1.86453 1.23522 1.33084 1.84117 1.22451 0.90226 0.81686 0.72594 1.90746 1.66454 1.36260 1.43683 1.21709 0.88635 1.06858 0.98344 0.83017 1.23127 1.02263 0.92694 0.97819 1.22496 1.01251 0.94630 0.99960 0.84475 1.19349 0.82587 0.82766 0.82909 1.90685 1.41457 1.68656 1.41579 1.45964 1.43093 1.05521 1.41266 1.21634 0.93562 0.91747 0.92558 1.20692 0.97216 0.91022 0.97405 1.21765 1.00090 1.02404 0.94261 1.21771 0.94304 1.02602 0.99858 1.19591 0.93996 0.96322 0.94072 1.21082 1.23448 0.88335 1.21909 0.90374 1.24990 0.96780 0.94775 0.96873 1.69903 1.42009 1.00998 1.41452 0.86861 0.82186 0.79011 0.81733 1.20375 1.21499 1.19016 0.91925 0.91607 0.88082 0.86374 0.86571 0.76473 0.91894 0.91819 0.94976 0.90944 0.93384 0.93422 0.90862 0.95008 0.96393 0.96829 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.17 10.56 -39.26 -0.41 -4.58 16 3 C 0.49 6.43 6.62 36.00 0.24 6.67 16 4 O -0.49 -8.17 15.60 -19.32 -0.30 -8.47 16 5 C -0.14 -1.26 6.24 -91.73 -0.57 -1.83 16 6 H 0.15 0.87 8.14 -51.93 -0.42 0.44 16 7 C -0.12 -1.00 9.74 -26.73 -0.26 -1.26 16 8 C -0.16 -1.62 6.19 -91.73 -0.57 -2.19 16 9 H 0.14 0.91 8.14 -51.93 -0.42 0.48 16 10 C 0.54 8.13 6.05 -10.99 -0.07 8.06 16 11 O -0.55 -10.27 15.69 5.56 0.09 -10.19 16 12 N -0.71 -10.57 4.96 -60.29 -0.30 -10.87 16 13 C 0.13 2.29 4.56 -4.04 -0.02 2.27 16 14 C -0.06 -1.20 0.54 -154.50 -0.08 -1.28 16 15 C -0.13 -2.35 8.05 37.16 0.30 -2.05 16 16 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 17 C 0.00 -0.05 3.11 -27.88 -0.09 -0.13 16 18 C -0.51 -13.88 8.20 -34.44 -0.28 -14.16 16 19 H 0.08 2.24 5.92 -52.49 -0.31 1.93 16 20 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 21 N -0.90 -27.52 13.96 55.43 0.77 -26.74 16 22 Si 0.87 21.88 27.47 -169.99 -4.67 17.21 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 26 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 27 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 28 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.12 1.20 7.69 -51.93 -0.40 0.80 16 31 H 0.40 5.03 6.16 -40.82 -0.25 4.78 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 35 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 1.44 6.62 -51.93 -0.34 1.10 16 39 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 40 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 41 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 343.58 15.07 5.18 5.18 Total: -1.00 -34.87 343.58 -6.30 -41.17 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.52 Total: 1.92 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -0.13 Total: -4.62 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.47 Total: -37.62 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.63 Total: -23.24 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.87 -6.30 -41.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345876331.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.940 kcal (2) G-P(sol) polarization free energy of solvation -34.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds