Wall clock time and date at job start Tue Mar 31 2020 06:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 117.00281 * 2 1 4 4 O 1.20822 * 119.99396 * 0.02562 * 3 2 1 5 5 C 1.50692 * 120.00403 * 179.97438 * 3 2 1 6 6 H 1.08998 * 115.55013 * 276.50805 * 5 3 2 7 7 C 1.53008 * 117.49938 * 62.17177 * 5 3 2 8 8 C 1.53002 * 60.03128 * 107.50203 * 7 5 3 9 9 H 1.09000 * 117.49227 * 107.50327 * 8 7 5 10 10 C 1.50701 * 117.49975 * 252.52388 * 8 7 5 11 11 O 1.21281 * 120.00019 * 7.80037 * 10 8 7 12 12 N 1.34772 * 119.99729 * 187.80090 * 10 8 7 13 13 C 1.46501 * 119.99782 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.46996 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47119 * 299.99996 * 14 13 12 16 16 C 1.53001 * 109.47244 * 60.00162 * 14 13 12 17 17 C 1.53006 * 109.47165 * 180.02562 * 14 13 12 18 18 C 1.50696 * 109.47099 * 179.97438 * 17 14 13 19 19 H 1.07999 * 119.99782 * 0.02562 * 18 17 14 20 20 C 1.37872 * 119.99683 * 180.02562 * 18 17 14 21 21 N 1.31516 * 119.99998 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00293 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47296 * 90.00006 * 22 20 18 24 24 H 1.48501 * 109.47355 * 210.00092 * 22 20 18 25 25 H 1.48498 * 109.46990 * 330.00061 * 22 20 18 26 26 H 1.09002 * 109.47178 * 299.99863 * 1 2 3 27 27 H 1.08999 * 109.47083 * 59.99937 * 1 2 3 28 28 H 1.09006 * 109.47491 * 179.97438 * 1 2 3 29 29 H 1.08991 * 117.50015 * 215.00347 * 7 5 3 30 30 H 1.09000 * 117.49289 * 359.97438 * 7 5 3 31 31 H 0.97005 * 120.00275 * 0.02562 * 12 10 8 32 32 H 1.08999 * 109.47330 * 300.00210 * 13 12 10 33 33 H 1.08997 * 109.46868 * 60.00571 * 13 12 10 34 34 H 1.09004 * 109.47239 * 60.00035 * 15 14 13 35 35 H 1.09001 * 109.47023 * 179.97438 * 15 14 13 36 36 H 1.08997 * 109.47083 * 300.00321 * 15 14 13 37 37 H 1.08999 * 109.47066 * 59.99981 * 16 14 13 38 38 H 1.08997 * 109.46778 * 179.97438 * 16 14 13 39 39 H 1.09004 * 109.46896 * 299.99831 * 16 14 13 40 40 H 1.08998 * 109.46592 * 299.99899 * 17 14 13 41 41 H 1.09005 * 109.46701 * 59.99654 * 17 14 13 42 42 H 0.96999 * 120.00071 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0412 1.1884 0.9778 7 6 4.3054 0.6789 -1.1992 8 6 4.2265 2.1972 -1.0274 9 1 5.1357 2.7175 -0.7264 10 6 3.3215 2.9572 -1.9626 11 8 2.5846 2.3561 -2.7153 12 7 3.3312 4.3049 -1.9625 13 6 2.4519 5.0437 -2.8720 14 6 2.6581 6.5466 -2.6720 15 6 2.3249 6.9190 -1.2259 16 6 4.1156 6.9053 -2.9682 17 6 1.7393 7.3182 -3.6214 18 6 1.9419 8.7984 -3.4239 19 1 2.6549 9.1532 -2.6945 20 6 1.2169 9.6995 -4.1744 21 7 1.3940 10.9913 -4.0025 22 14 -0.0159 9.0858 -5.4365 23 1 -1.3457 8.9295 -4.7943 24 1 -0.1152 10.0650 -6.5484 25 1 0.4332 7.7748 -5.9701 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 5.2665 0.2005 -1.0113 30 1 3.7031 0.2294 -1.9887 31 1 3.9209 4.7857 -1.3608 32 1 2.6895 4.7787 -3.9023 33 1 1.4136 4.7879 -2.6612 34 1 2.9791 6.3692 -0.5491 35 1 2.4722 7.9895 -1.0832 36 1 1.2866 6.6634 -1.0148 37 1 4.3529 6.6400 -3.9984 38 1 4.2623 7.9760 -2.8261 39 1 4.7698 6.3556 -2.2915 40 1 1.9763 7.0530 -4.6517 41 1 0.7010 7.0625 -3.4099 42 1 0.8837 11.6253 -4.5302 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345876331.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:42 Heat of formation + Delta-G solvation = -131.992885 kcal Electronic energy + Delta-G solvation = -22844.655290 eV Core-core repulsion = 19403.545777 eV Total energy + Delta-G solvation = -3441.109513 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.92575 -40.74811 -38.96949 -37.65709 -37.00431 -35.22592 -33.99380 -29.85921 -29.18291 -28.10996 -28.01231 -25.85689 -25.05422 -23.68786 -21.94851 -21.08893 -19.77028 -19.00272 -18.90143 -18.20916 -17.64547 -17.23087 -16.59438 -16.34438 -16.13751 -15.81553 -15.29644 -15.10045 -14.96961 -14.31339 -14.21595 -14.18349 -14.08252 -13.89591 -13.18629 -12.97272 -12.96427 -12.86409 -12.64218 -12.34073 -12.19652 -11.88748 -11.86381 -11.80403 -11.68011 -11.55469 -11.49353 -11.32153 -10.97762 -10.86094 -10.73118 -10.06686 -8.24937 -6.24905 1.04485 1.32831 1.35270 1.36993 1.45591 1.73229 2.19350 2.36438 2.71578 3.10193 3.55794 3.62187 3.66640 3.86855 3.96669 4.01869 4.12945 4.21245 4.24618 4.29551 4.60219 4.62205 4.66332 4.67770 4.76003 4.87176 4.92498 4.98670 5.06632 5.07048 5.26023 5.32660 5.34353 5.36657 5.46078 5.52584 5.66238 5.73583 6.35423 6.56704 6.64965 6.81355 7.24885 7.37818 8.90609 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.025002 B = 0.003747 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.653973 B = 7470.867738 C = 7932.704505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.357 6.357 3 C 0.479 3.521 4 O -0.534 6.534 5 C -0.134 4.134 6 H 0.197 0.803 7 C -0.105 4.105 8 C -0.170 4.170 9 H 0.182 0.818 10 C 0.529 3.471 11 O -0.592 6.592 12 N -0.702 5.702 13 C 0.142 3.858 14 C -0.058 4.058 15 C -0.122 4.122 16 C -0.122 4.122 17 C -0.003 4.003 18 C -0.502 4.502 19 H 0.055 0.945 20 C 0.008 3.992 21 N -0.949 5.949 22 Si 0.932 3.068 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.254 1.254 26 H 0.064 0.936 27 H 0.043 0.957 28 H 0.137 0.863 29 H 0.165 0.835 30 H 0.089 0.911 31 H 0.414 0.586 32 H 0.055 0.945 33 H 0.040 0.960 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.035 0.965 37 H 0.046 0.954 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.015 0.985 41 H 0.007 0.993 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.157 -24.622 10.533 27.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.273 6.273 3 C 0.322 3.678 4 O -0.423 6.423 5 C -0.153 4.153 6 H 0.214 0.786 7 C -0.142 4.142 8 C -0.190 4.190 9 H 0.199 0.801 10 C 0.317 3.683 11 O -0.473 6.473 12 N -0.354 5.354 13 C 0.018 3.982 14 C -0.058 4.058 15 C -0.179 4.179 16 C -0.179 4.179 17 C -0.041 4.041 18 C -0.540 4.540 19 H 0.073 0.927 20 C -0.188 4.188 21 N -0.591 5.591 22 Si 0.757 3.243 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.178 1.178 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.155 0.845 29 H 0.183 0.817 30 H 0.107 0.893 31 H 0.252 0.748 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.033 0.967 41 H 0.025 0.975 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.337 -24.570 9.929 27.498 hybrid contribution -1.267 0.999 -0.602 1.722 sum 6.070 -23.571 9.327 26.066 Atomic orbital electron populations 1.23485 0.75254 1.05666 1.01865 1.86462 1.24485 1.32702 1.83607 1.23414 0.92056 0.81237 0.71044 1.90724 1.67872 1.37660 1.46059 1.22035 0.86011 1.06560 1.00672 0.78571 1.23293 1.03561 0.91248 0.96122 1.22635 1.01597 0.95400 0.99392 0.80101 1.20311 0.82510 0.82562 0.82937 1.90664 1.43542 1.69426 1.43675 1.45825 1.42723 1.05858 1.40945 1.21200 0.93062 0.90982 0.92960 1.20558 0.97289 0.91316 0.96653 1.21682 1.00285 1.01331 0.94596 1.21688 0.93788 1.01474 1.00939 1.19563 0.94792 0.94568 0.95175 1.21346 1.21953 0.90303 1.20424 0.92714 1.25791 0.98958 0.94910 0.99169 1.70030 1.43679 1.02255 1.43088 0.85929 0.79934 0.78929 0.79485 1.19950 1.21049 1.17829 0.91719 0.93764 0.84510 0.81730 0.89275 0.74841 0.92658 0.94186 0.91346 0.93244 0.94560 0.93519 0.93376 0.90930 0.96658 0.97515 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.56 113.37 1.20 1.77 16 2 O -0.36 -7.98 10.56 -51.42 -0.54 -8.52 16 3 C 0.48 11.98 6.62 71.23 0.47 12.46 16 4 O -0.53 -17.96 15.60 22.52 0.35 -17.60 16 5 C -0.13 -1.98 6.24 -11.51 -0.07 -2.05 16 6 H 0.20 1.12 8.14 -2.39 -0.02 1.10 16 7 C -0.11 -1.31 9.74 30.60 0.30 -1.01 16 8 C -0.17 -2.72 6.19 -11.51 -0.07 -2.79 16 9 H 0.18 1.29 8.14 -2.39 -0.02 1.27 16 10 C 0.53 15.08 6.05 87.66 0.53 15.61 16 11 O -0.59 -22.29 15.69 -3.03 -0.05 -22.34 16 12 N -0.70 -19.63 4.96 -463.06 -2.30 -21.93 16 13 C 0.14 5.03 4.56 86.38 0.39 5.42 16 14 C -0.06 -2.17 0.54 -52.18 -0.03 -2.20 16 15 C -0.12 -4.40 8.05 71.98 0.58 -3.82 16 16 C -0.12 -4.11 8.05 71.98 0.58 -3.53 16 17 C 0.00 -0.15 3.11 29.85 0.09 -0.05 16 18 C -0.50 -27.95 8.20 25.60 0.21 -27.74 16 19 H 0.05 3.25 5.92 -2.91 -0.02 3.23 16 20 C 0.01 0.48 5.47 84.65 0.46 0.94 16 21 N -0.95 -59.19 13.96 21.45 0.30 -58.89 16 22 Si 0.93 45.60 27.47 68.60 1.88 47.48 16 23 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 24 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 25 H -0.25 -11.86 6.54 99.48 0.65 -11.21 16 26 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 27 H 0.04 1.01 8.13 -2.39 -0.02 0.99 16 28 H 0.14 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.17 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.09 1.66 7.69 -2.39 -0.02 1.65 16 31 H 0.41 9.00 6.16 -92.70 -0.57 8.43 16 32 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.07 1.95 6.86 -2.38 -0.02 1.93 16 35 H 0.05 2.01 6.62 -2.39 -0.02 1.99 16 36 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.05 1.87 6.62 -2.39 -0.02 1.86 16 39 H 0.07 1.84 6.86 -2.38 -0.02 1.82 16 40 H 0.02 0.72 7.20 -2.39 -0.02 0.71 16 41 H 0.01 0.32 7.57 -2.38 -0.02 0.30 16 42 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -80.48 343.58 4.68 -75.79 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.39 Total: 13.02 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 4.64 Total: -7.01 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -2.00 Total: -80.82 kcal Atomic # 8 Polarization: -48.23 SS G_CDS: -0.24 Total: -48.47 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.88 Total: 47.48 kcal Total: -80.48 4.68 -75.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345876331.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.199 kcal (2) G-P(sol) polarization free energy of solvation -80.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds