Wall clock time and date at job start Tue Mar 31 2020 05:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 120.00237 * 2 1 4 4 H 1.48498 * 109.47381 * 240.00635 * 3 2 1 5 5 H 1.48505 * 109.46962 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46852 * 120.00142 * 3 2 1 7 7 C 1.38952 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99660 * 197.98828 * 7 2 1 9 9 N 1.37094 * 120.00351 * 17.98253 * 7 2 1 10 10 C 1.34781 * 119.99800 * 44.48700 * 9 7 2 11 11 O 1.21289 * 120.00040 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99856 * 180.02562 * 10 9 7 13 13 C 1.52992 * 109.46882 * 180.02562 * 12 10 9 14 14 O 1.42901 * 109.47035 * 179.97438 * 13 12 10 15 15 C 1.42903 * 114.00371 * 179.97438 * 14 13 12 16 16 C 1.52995 * 109.47406 * 180.02562 * 15 14 13 17 17 H 1.08996 * 109.86845 * 54.29763 * 16 15 14 18 18 C 1.54100 * 109.87796 * 175.30644 * 16 15 14 19 19 C 1.54817 * 104.18292 * 121.45452 * 18 16 15 20 20 C 1.54993 * 102.09596 * 20.88379 * 19 18 16 21 21 O 1.43740 * 109.87731 * 293.29447 * 16 15 14 22 22 C 1.46501 * 120.00345 * 224.49318 * 9 7 2 23 23 C 1.53001 * 117.49476 * 3.26774 * 22 9 7 24 24 C 1.53002 * 117.49227 * 294.61385 * 22 9 7 25 25 H 0.97006 * 119.99783 * 354.94778 * 1 2 3 26 26 H 1.09000 * 109.46893 * 300.00049 * 12 10 9 27 27 H 1.08995 * 109.46986 * 59.99798 * 12 10 9 28 28 H 1.09000 * 109.47110 * 299.99564 * 13 12 10 29 29 H 1.08995 * 109.47762 * 59.99922 * 13 12 10 30 30 H 1.08999 * 109.47383 * 300.00637 * 15 14 13 31 31 H 1.09004 * 109.46799 * 59.99815 * 15 14 13 32 32 H 1.09002 * 110.48897 * 240.12864 * 18 16 15 33 33 H 1.08995 * 110.48767 * 2.78315 * 18 16 15 34 34 H 1.09007 * 110.90271 * 139.07987 * 19 18 16 35 35 H 1.08997 * 110.90775 * 262.67588 * 19 18 16 36 36 H 1.08991 * 110.62036 * 81.47128 * 20 19 18 37 37 H 1.08999 * 110.61601 * 204.31922 * 20 19 18 38 38 H 1.08996 * 115.55083 * 148.94084 * 22 9 7 39 39 H 1.08998 * 117.49907 * 0.02562 * 23 22 9 40 40 H 1.09006 * 117.49886 * 145.02459 * 23 22 9 41 41 H 1.09001 * 117.49343 * 214.97618 * 24 22 9 42 42 H 1.08991 * 117.50125 * 359.97009 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2832 2.7465 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0492 -1.2264 0.2883 9 7 1.3736 -2.3615 -0.3676 10 6 0.5765 -2.3776 -1.4543 11 8 0.4216 -1.3676 -2.1078 12 6 -0.1223 -3.6505 -1.8575 13 6 -0.9571 -3.3978 -3.1144 14 8 -1.6192 -4.6050 -3.4971 15 6 -2.4307 -4.4774 -4.6664 16 6 -3.0878 -5.8229 -4.9806 17 1 -3.6289 -6.1841 -4.1061 18 6 -4.0562 -5.6682 -6.1692 19 6 -3.5226 -6.6662 -7.2257 20 6 -2.6848 -7.6400 -6.3585 21 8 -2.0850 -6.7787 -5.3640 22 6 1.5610 -3.5816 0.4214 23 6 2.4159 -3.4805 1.6863 24 6 2.9616 -4.1970 0.4485 25 1 -0.4850 0.8369 0.0740 26 1 0.6192 -4.4225 -2.0633 27 1 -0.7739 -3.9793 -1.0480 28 1 -1.6986 -2.6258 -2.9090 29 1 -0.3052 -3.0693 -3.9237 30 1 -3.2030 -3.7281 -4.4927 31 1 -1.8096 -4.1705 -5.5079 32 1 -5.0707 -5.9336 -5.8718 33 1 -4.0252 -4.6498 -6.5566 34 1 -4.3436 -7.1898 -7.7156 35 1 -2.8947 -6.1588 -7.9579 36 1 -3.3275 -8.3813 -5.8838 37 1 -1.9181 -8.1275 -6.9607 38 1 0.7110 -4.2636 0.4416 39 1 2.8385 -2.5061 1.9315 40 1 2.1286 -4.0963 2.5385 41 1 3.0329 -5.2840 0.4870 42 1 3.7432 -3.6944 -0.1210 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346505787.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:51 Heat of formation + Delta-G solvation = -92.558380 kcal Electronic energy + Delta-G solvation = -22467.136874 eV Core-core repulsion = 19027.737370 eV Total energy + Delta-G solvation = -3439.399504 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.62324 -38.62017 -37.27231 -35.97495 -32.88009 -32.37527 -31.52396 -30.81102 -29.65539 -25.64326 -24.88283 -22.68774 -22.20901 -21.62630 -21.15925 -20.95819 -18.97120 -17.11651 -16.50374 -16.18836 -15.98887 -15.89136 -15.31703 -15.05861 -14.63974 -14.17391 -13.91017 -13.83684 -13.57396 -13.37652 -12.68889 -12.29833 -12.16289 -11.97626 -11.71343 -11.45073 -11.39757 -11.10051 -10.92781 -10.91566 -10.85365 -10.77002 -10.56316 -10.41420 -10.16100 -9.91473 -9.74925 -9.67608 -9.22214 -8.67027 -7.98871 -6.98791 -6.07887 -3.83432 3.32102 3.39016 3.42609 3.66427 3.81590 4.17405 4.31624 4.32922 4.60299 4.70162 4.82823 4.89904 5.01883 5.12816 5.24242 5.34577 5.34967 5.42992 5.49980 5.51965 5.64838 5.66936 5.73037 5.73814 5.79490 5.81630 5.85872 5.92247 6.09487 6.25415 6.28854 6.43591 6.55467 6.58777 6.79329 6.82441 6.98357 7.55931 7.64949 8.31078 9.09976 9.19184 9.69908 10.32910 11.01484 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.023446 B = 0.003497 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.951479 B = 8004.892176 C = 8890.761803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.073 3.927 3 Si 0.914 3.086 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.349 4.349 8 H 0.077 0.923 9 N -0.428 5.428 10 C 0.488 3.512 11 O -0.538 6.538 12 C -0.129 4.129 13 C 0.083 3.917 14 O -0.388 6.388 15 C 0.066 3.934 16 C 0.079 3.921 17 H 0.076 0.924 18 C -0.150 4.150 19 C -0.155 4.155 20 C 0.042 3.958 21 O -0.362 6.362 22 C 0.075 3.925 23 C -0.174 4.174 24 C -0.207 4.207 25 H 0.264 0.736 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.777 -13.014 -8.853 17.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.137 4.137 3 Si 0.741 3.259 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.476 4.476 8 H 0.094 0.906 9 N -0.149 5.149 10 C 0.276 3.724 11 O -0.416 6.416 12 C -0.170 4.170 13 C 0.007 3.993 14 O -0.307 6.307 15 C -0.011 4.011 16 C 0.021 3.979 17 H 0.094 0.906 18 C -0.188 4.188 19 C -0.193 4.193 20 C -0.035 4.035 21 O -0.281 6.281 22 C -0.031 4.031 23 C -0.212 4.212 24 C -0.246 4.246 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.812 -12.515 -9.071 16.891 hybrid contribution 0.064 0.981 -0.036 0.984 sum -6.748 -11.533 -9.107 16.171 Atomic orbital electron populations 1.69822 1.06551 1.27429 1.43031 1.25251 0.94838 0.99372 0.94265 0.86257 0.79265 0.81908 0.78456 1.19965 1.21218 1.20392 1.18804 0.94357 0.83842 1.50551 0.90578 1.42733 1.44077 1.06938 1.21155 1.19593 0.82938 0.88430 0.81471 1.90518 1.62889 1.34969 1.53249 1.21440 0.99346 0.98921 0.97284 1.22158 0.95249 0.85344 0.96545 1.87839 1.63857 1.34793 1.44218 1.22610 0.94304 0.95266 0.88942 1.22770 0.88797 0.89405 0.96917 0.90603 1.22942 0.99458 1.01151 0.95266 1.23134 1.00271 0.97511 0.98382 1.23590 0.96963 0.93284 0.89657 1.89070 1.35792 1.44581 1.58609 1.21716 0.92666 0.91584 0.97137 1.23070 1.04588 1.02420 0.91105 1.23316 0.99791 0.98500 1.03028 0.92605 0.90013 0.90111 0.92643 0.92943 0.92248 0.92828 0.90192 0.90070 0.90214 0.90397 0.92267 0.89040 0.87865 0.87539 0.89820 0.89754 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.02 11.74 55.50 0.65 -24.37 16 2 C 0.07 2.09 4.39 -17.47 -0.08 2.01 16 3 Si 0.91 22.20 29.59 -169.99 -5.03 17.17 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.35 -9.69 7.91 -14.93 -0.12 -9.81 16 8 H 0.08 2.04 7.27 -52.49 -0.38 1.66 16 9 N -0.43 -11.01 2.83 -107.73 -0.31 -11.31 16 10 C 0.49 12.72 6.96 -10.98 -0.08 12.64 16 11 O -0.54 -16.02 13.75 5.55 0.08 -15.95 16 12 C -0.13 -2.69 4.69 -27.88 -0.13 -2.82 16 13 C 0.08 1.64 5.23 37.15 0.19 1.83 16 14 O -0.39 -6.94 10.33 -37.24 -0.38 -7.32 16 15 C 0.07 0.93 5.39 37.16 0.20 1.13 16 16 C 0.08 0.96 3.70 -26.16 -0.10 0.86 16 17 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 18 C -0.15 -1.28 6.64 -25.20 -0.17 -1.45 16 19 C -0.16 -1.18 7.16 -24.72 -0.18 -1.36 16 20 C 0.04 0.39 7.72 38.21 0.29 0.68 16 21 O -0.36 -4.99 11.19 -37.24 -0.42 -5.41 16 22 C 0.08 1.56 5.87 -67.93 -0.40 1.16 16 23 C -0.17 -3.23 9.80 -26.69 -0.26 -3.50 16 24 C -0.21 -3.67 10.36 -26.69 -0.28 -3.95 16 25 H 0.26 7.58 8.32 -40.82 -0.34 7.24 16 26 H 0.08 1.57 8.11 -51.93 -0.42 1.15 16 27 H 0.08 1.60 7.57 -51.93 -0.39 1.21 16 28 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 29 H 0.05 1.05 8.10 -51.93 -0.42 0.63 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.65 7.70 -51.93 -0.40 0.25 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.10 1.94 6.96 -51.93 -0.36 1.58 16 39 H 0.11 2.18 6.73 -51.93 -0.35 1.83 16 40 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 LS Contribution 345.00 15.07 5.20 5.20 Total: -1.00 -34.12 345.00 -8.23 -42.35 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -6.93 Total: 2.21 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -1.09 Total: -2.56 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.35 Total: -35.68 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.73 Total: -28.68 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.12 -8.23 -42.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346505787.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.209 kcal (2) G-P(sol) polarization free energy of solvation -34.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds