Wall clock time and date at job start Tue Mar 31 2020 05:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86798 * 119.99270 * 2 1 4 4 H 1.48501 * 109.47507 * 270.00168 * 3 2 1 5 5 H 1.48505 * 109.47434 * 30.00335 * 3 2 1 6 6 H 1.48498 * 109.47120 * 149.99916 * 3 2 1 7 7 C 1.38942 * 120.00607 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99826 * 199.29493 * 7 2 1 9 9 N 1.37094 * 120.00019 * 19.28819 * 7 2 1 10 10 C 1.34780 * 119.99969 * 42.43699 * 9 7 2 11 11 O 1.21292 * 119.99775 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00198 * 179.97438 * 10 9 7 13 13 C 1.52996 * 109.47279 * 179.97438 * 12 10 9 14 14 O 1.42896 * 109.47105 * 179.97438 * 13 12 10 15 15 C 1.42906 * 113.99881 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.46911 * 180.02562 * 15 14 13 17 17 H 1.09005 * 109.82468 * 305.57175 * 16 15 14 18 18 C 1.54383 * 109.83119 * 184.59292 * 16 15 14 19 19 C 1.55299 * 102.25374 * 219.12982 * 18 16 15 20 20 C 1.54948 * 100.94281 * 34.12932 * 19 18 16 21 21 O 1.43239 * 109.83316 * 66.45775 * 16 15 14 22 22 C 1.46500 * 120.00159 * 222.43187 * 9 7 2 23 23 C 1.53000 * 117.50051 * 3.39750 * 22 9 7 24 24 C 1.52997 * 117.50217 * 294.73630 * 22 9 7 25 25 H 0.96997 * 120.00513 * 354.77070 * 1 2 3 26 26 H 1.09006 * 109.46895 * 59.99492 * 12 10 9 27 27 H 1.09002 * 109.46807 * 300.00085 * 12 10 9 28 28 H 1.08999 * 109.46822 * 59.99615 * 13 12 10 29 29 H 1.08999 * 109.47113 * 300.00157 * 13 12 10 30 30 H 1.08997 * 109.47393 * 300.00053 * 15 14 13 31 31 H 1.08998 * 109.46656 * 60.00949 * 15 14 13 32 32 H 1.09003 * 110.84368 * 337.31858 * 18 16 15 33 33 H 1.08996 * 110.84938 * 100.93885 * 18 16 15 34 34 H 1.09002 * 111.12828 * 276.20979 * 19 18 16 35 35 H 1.09004 * 111.16495 * 152.06343 * 19 18 16 36 36 H 1.08995 * 110.31540 * 204.63617 * 20 19 18 37 37 H 1.09008 * 110.38979 * 82.51293 * 20 19 18 38 38 H 1.09000 * 115.54912 * 149.06609 * 22 9 7 39 39 H 1.09002 * 117.49739 * 0.02562 * 23 22 9 40 40 H 1.08994 * 117.49848 * 145.01652 * 23 22 9 41 41 H 1.08999 * 117.50108 * 214.97990 * 24 22 9 42 42 H 1.09003 * 117.49472 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 2.4954 2.0467 -1.4000 5 1 1.4453 2.6527 0.7001 6 1 3.5455 1.4404 0.7000 7 6 2.0090 -1.2032 -0.0005 8 1 3.0435 -1.2295 0.3085 9 7 1.3814 -2.3570 -0.3932 10 6 0.5730 -2.3510 -1.4717 11 8 0.4005 -1.3246 -2.0945 12 6 -0.1165 -3.6194 -1.9038 13 6 -0.9683 -3.3401 -3.1436 14 8 -1.6216 -4.5430 -3.5536 15 6 -2.4476 -4.3908 -4.7097 16 6 -3.0936 -5.7339 -5.0554 17 1 -2.3233 -6.4977 -5.1634 18 6 -3.8956 -5.6069 -6.3684 19 6 -5.1537 -6.4673 -6.0707 20 6 -5.3419 -6.1990 -4.5563 21 8 -4.0112 -6.1120 -4.0225 22 6 1.5894 -3.5967 0.3593 23 6 2.4543 -3.5217 1.6191 24 6 2.9967 -4.1969 0.3570 25 1 -0.4851 0.8365 0.0766 26 1 -0.7560 -3.9782 -1.0972 27 1 0.6309 -4.3772 -2.1391 28 1 -0.3290 -2.9811 -3.9502 29 1 -1.7156 -2.5825 -2.9078 30 1 -3.2260 -3.6555 -4.5059 31 1 -1.8394 -4.0531 -5.5488 32 1 -4.1709 -4.5690 -6.5559 33 1 -3.3341 -6.0181 -7.2073 34 1 -4.9618 -7.5232 -6.2617 35 1 -6.0139 -6.1174 -6.6415 36 1 -5.8833 -7.0224 -4.0905 37 1 -5.8743 -5.2607 -4.4001 38 1 0.7472 -4.2886 0.3675 39 1 2.8682 -2.5499 1.8883 40 1 2.1813 -4.1645 2.4560 41 1 3.0805 -5.2836 0.3641 42 1 3.7678 -3.6696 -0.2048 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346505791.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:55 Heat of formation + Delta-G solvation = -91.682962 kcal Electronic energy + Delta-G solvation = -22491.667002 eV Core-core repulsion = 19052.305459 eV Total energy + Delta-G solvation = -3439.361543 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.66331 -38.61941 -37.25520 -35.97204 -32.86985 -32.37906 -31.52251 -30.81206 -29.65609 -25.71347 -24.94408 -22.70941 -21.90181 -21.63137 -21.23031 -20.98274 -18.97441 -17.25919 -16.74877 -16.18238 -16.02295 -15.64812 -15.37062 -14.95337 -14.52703 -14.25301 -13.89825 -13.86090 -13.55415 -13.13801 -12.68213 -12.54716 -12.12291 -11.95466 -11.75950 -11.43312 -11.39972 -11.09535 -11.06259 -10.91772 -10.88373 -10.78093 -10.56360 -10.39081 -10.13236 -9.92414 -9.68343 -9.55791 -9.21281 -8.68872 -7.96529 -6.99149 -6.07071 -3.81089 3.32894 3.39780 3.42815 3.59258 3.88199 4.18315 4.23713 4.32890 4.58785 4.72182 4.82494 4.95339 4.97512 5.12002 5.23252 5.35066 5.39424 5.44998 5.45636 5.51574 5.61952 5.64435 5.72004 5.74763 5.76263 5.82140 5.86646 6.00071 6.08775 6.25708 6.28232 6.44077 6.54974 6.59615 6.82002 6.95027 6.97372 7.57452 7.65396 8.30265 9.09786 9.20163 9.70990 10.33860 11.02109 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.022751 B = 0.003518 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.444486 B = 7957.816041 C = 8741.776976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.350 4.350 8 H 0.078 0.922 9 N -0.428 5.428 10 C 0.485 3.515 11 O -0.537 6.537 12 C -0.129 4.129 13 C 0.083 3.917 14 O -0.386 6.386 15 C 0.055 3.945 16 C 0.083 3.917 17 H 0.088 0.912 18 C -0.150 4.150 19 C -0.156 4.156 20 C 0.045 3.955 21 O -0.366 6.366 22 C 0.075 3.925 23 C -0.175 4.175 24 C -0.207 4.207 25 H 0.263 0.737 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.061 -12.450 -9.041 16.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.138 4.138 3 Si 0.740 3.260 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.476 4.476 8 H 0.096 0.904 9 N -0.149 5.149 10 C 0.272 3.728 11 O -0.415 6.415 12 C -0.169 4.169 13 C 0.007 3.993 14 O -0.305 6.305 15 C -0.023 4.023 16 C 0.026 3.974 17 H 0.106 0.894 18 C -0.187 4.187 19 C -0.193 4.193 20 C -0.031 4.031 21 O -0.285 6.285 22 C -0.031 4.031 23 C -0.212 4.212 24 C -0.246 4.246 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.253 -11.977 -9.120 16.710 hybrid contribution 0.236 1.067 -0.187 1.109 sum -7.018 -10.910 -9.307 15.965 Atomic orbital electron populations 1.69842 1.06574 1.27340 1.42712 1.25213 0.94793 0.99339 0.94435 0.86210 0.79272 0.82240 0.78257 1.20387 1.21339 1.19939 1.18865 0.95045 0.84103 1.49631 0.90418 1.42760 1.43681 1.06133 1.22287 1.19563 0.83135 0.88591 0.81501 1.90522 1.62715 1.33673 1.54571 1.21433 0.99176 0.98866 0.97450 1.22155 0.95241 0.85606 0.96306 1.87841 1.63059 1.34074 1.45573 1.22826 0.93764 0.96696 0.88992 1.22783 0.92137 0.96078 0.86441 0.89436 1.23119 0.96504 1.01495 0.97602 1.23265 0.98261 1.00908 0.96893 1.23409 0.85777 1.01233 0.92701 1.88573 1.16245 1.89863 1.33847 1.21708 0.92546 0.91191 0.97661 1.23076 1.04585 1.02561 0.91013 1.23317 0.99791 0.98740 1.02780 0.92652 0.90065 0.90145 0.93066 0.92645 0.93118 0.92587 0.90143 0.89626 0.90286 0.89893 0.89785 0.92272 0.87809 0.87543 0.89789 0.89751 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.06 11.64 55.50 0.65 -24.42 16 2 C 0.07 2.08 4.35 -17.47 -0.08 2.01 16 3 Si 0.91 22.24 29.60 -169.99 -5.03 17.21 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.35 -9.71 8.00 -14.94 -0.12 -9.83 16 8 H 0.08 2.09 7.18 -52.49 -0.38 1.71 16 9 N -0.43 -11.00 2.85 -107.73 -0.31 -11.31 16 10 C 0.48 12.64 6.97 -10.98 -0.08 12.56 16 11 O -0.54 -16.01 13.60 5.55 0.08 -15.94 16 12 C -0.13 -2.68 4.69 -27.88 -0.13 -2.81 16 13 C 0.08 1.65 5.23 37.16 0.19 1.84 16 14 O -0.39 -6.93 10.33 -37.79 -0.39 -7.32 16 15 C 0.05 0.77 5.47 37.16 0.20 0.97 16 16 C 0.08 1.00 3.81 -26.01 -0.10 0.90 16 17 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 18 C -0.15 -1.24 6.54 -24.79 -0.16 -1.40 16 19 C -0.16 -1.15 7.16 -24.48 -0.18 -1.32 16 20 C 0.05 0.44 7.78 38.19 0.30 0.74 16 21 O -0.37 -5.13 11.00 -37.79 -0.42 -5.55 16 22 C 0.08 1.56 5.87 -67.93 -0.40 1.16 16 23 C -0.17 -3.24 9.80 -26.69 -0.26 -3.50 16 24 C -0.21 -3.65 10.36 -26.70 -0.28 -3.93 16 25 H 0.26 7.60 8.32 -40.82 -0.34 7.26 16 26 H 0.08 1.64 7.56 -51.93 -0.39 1.25 16 27 H 0.08 1.52 8.11 -51.93 -0.42 1.10 16 28 H 0.05 1.01 8.10 -51.93 -0.42 0.58 16 29 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.63 7.85 -51.93 -0.41 0.22 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 38 H 0.10 1.96 6.95 -51.93 -0.36 1.60 16 39 H 0.11 2.17 6.68 -51.93 -0.35 1.83 16 40 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 344.78 15.07 5.20 5.20 Total: -1.00 -34.29 344.78 -8.24 -42.53 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.93 Total: 2.21 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -1.08 Total: -2.61 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.34 Total: -35.72 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.73 Total: -28.81 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.29 -8.24 -42.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346505791.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.151 kcal (2) G-P(sol) polarization free energy of solvation -34.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds