Wall clock time and date at job start Tue Mar 31 2020 05:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34230 * 117.00247 * 2 1 4 4 O 1.20827 * 119.99589 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00022 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.46984 * 179.97438 * 5 3 2 7 7 C 1.37102 * 119.99779 * 269.99931 * 6 5 3 8 8 H 1.07994 * 119.99794 * 36.63455 * 7 6 5 9 9 C 1.38949 * 119.99551 * 216.63325 * 7 6 5 10 10 N 1.31414 * 119.99997 * 230.88961 * 9 7 6 11 11 Si 1.86800 * 120.00261 * 50.89786 * 9 7 6 12 12 H 1.48495 * 109.47181 * 59.99456 * 11 9 7 13 13 H 1.48499 * 109.47108 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46944 * 299.99588 * 11 9 7 15 15 C 1.34773 * 120.00262 * 90.00136 * 6 5 3 16 16 O 1.21293 * 120.00570 * 185.09134 * 15 6 5 17 17 C 1.50704 * 119.99743 * 5.08709 * 15 6 5 18 18 H 1.08998 * 110.43658 * 0.70785 * 17 15 6 19 19 C 1.54890 * 110.48763 * 238.16084 * 17 15 6 20 20 C 1.54889 * 102.74836 * 203.38398 * 19 17 15 21 21 C 1.54270 * 104.19887 * 37.93853 * 20 19 17 22 22 C 1.53000 * 110.02905 * 95.67763 * 21 20 19 23 23 C 1.52993 * 110.03572 * 217.05902 * 21 20 19 24 24 C 1.53870 * 106.59746 * 336.39639 * 21 20 19 25 25 H 1.08991 * 109.47434 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47111 * 300.00226 * 1 2 3 27 27 H 1.09002 * 109.46539 * 60.00154 * 1 2 3 28 28 H 1.09002 * 109.47181 * 299.99835 * 5 3 2 29 29 H 1.08998 * 109.47315 * 60.00176 * 5 3 2 30 30 H 0.96996 * 120.00165 * 185.42651 * 10 9 7 31 31 H 1.08998 * 110.75807 * 321.69488 * 19 17 15 32 32 H 1.08992 * 110.75312 * 85.06957 * 19 17 15 33 33 H 1.08993 * 110.48914 * 156.62056 * 20 19 17 34 34 H 1.09007 * 110.48573 * 279.26646 * 20 19 17 35 35 H 1.09004 * 109.47509 * 61.45315 * 22 21 20 36 36 H 1.08993 * 109.47199 * 181.45628 * 22 21 20 37 37 H 1.09001 * 109.47071 * 301.45444 * 22 21 20 38 38 H 1.08996 * 109.47175 * 58.54477 * 23 21 20 39 39 H 1.09001 * 109.47334 * 178.54775 * 23 21 20 40 40 H 1.09004 * 109.47487 * 298.54916 * 23 21 20 41 41 H 1.09006 * 110.03132 * 240.71061 * 24 21 20 42 42 H 1.08993 * 110.03659 * 119.28286 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6797 -0.0002 7 6 4.1767 3.3362 -1.1879 8 1 3.5341 3.1295 -2.0308 9 6 5.2009 4.2676 -1.3068 10 7 4.9473 5.4659 -1.7829 11 14 6.9384 3.8164 -0.7902 12 1 7.4095 2.6603 -1.5945 13 1 7.8387 4.9755 -1.0159 14 1 6.9483 3.4543 0.6500 15 6 4.1724 3.3267 1.1666 16 8 4.4259 4.5128 1.1681 17 6 4.0705 2.5764 2.4696 18 1 3.8504 1.5246 2.2870 19 6 2.9845 3.2082 3.3755 20 6 3.4200 2.7620 4.7933 21 6 4.9602 2.8430 4.7590 22 6 5.4273 4.1840 5.3286 23 6 5.5637 1.6923 5.5667 24 6 5.3738 2.7251 3.2816 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 3.9557 0.7809 0.8908 29 1 3.9565 0.7805 -0.8891 30 1 5.6738 6.0892 -1.9399 31 1 2.9960 4.2949 3.2920 32 1 1.9991 2.8114 3.1313 33 1 3.0191 3.4400 5.5466 34 1 3.0961 1.7395 4.9878 35 1 5.1085 4.2684 6.3675 36 1 6.5144 4.2421 5.2762 37 1 4.9916 4.9970 4.7477 38 1 5.2246 0.7420 5.1545 39 1 6.6513 1.7433 5.5150 40 1 5.2453 1.7717 6.6062 41 1 6.0045 1.8475 3.1393 42 1 5.9072 3.6231 2.9703 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358965508.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:13 Heat of formation + Delta-G solvation = -111.972810 kcal Electronic energy + Delta-G solvation = -24133.849823 eV Core-core repulsion = 20693.608446 eV Total energy + Delta-G solvation = -3440.241377 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.14896 -39.33129 -37.57112 -35.96381 -34.21811 -32.51373 -31.65872 -28.74203 -28.62969 -27.16599 -26.53701 -25.27110 -23.70506 -21.42115 -20.70576 -18.76044 -18.49813 -17.35271 -17.09457 -16.45805 -15.97282 -15.48092 -15.12597 -14.68520 -14.36960 -13.73435 -13.56012 -13.48541 -13.08802 -13.00772 -12.77980 -12.69908 -12.47452 -12.23694 -11.90019 -11.77492 -11.53013 -11.33307 -11.09250 -10.91968 -10.76610 -10.47169 -10.44136 -10.37150 -10.31141 -10.21551 -10.10723 -10.02920 -9.86696 -8.70327 -8.20117 -7.56282 -6.50715 -3.71857 2.75267 3.00031 3.32063 3.43463 3.47480 3.95160 4.40641 4.54688 4.80160 4.87769 4.96120 5.03304 5.27141 5.30069 5.36073 5.43302 5.48122 5.53845 5.61027 5.65634 5.70208 5.73899 5.80859 5.89958 5.92802 5.95225 6.01744 6.08607 6.11248 6.24799 6.32896 6.35454 6.44009 6.60548 6.71320 6.75074 6.77119 7.71979 8.01844 8.31586 8.82302 9.07623 9.46871 10.00603 10.62860 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.011072 B = 0.009181 C = 0.005765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.287330 B = 3049.062584 C = 4855.334040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.370 6.370 3 C 0.432 3.568 4 O -0.481 6.481 5 C 0.108 3.892 6 N -0.440 5.440 7 C -0.400 4.400 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.781 5.781 11 Si 0.832 3.168 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.264 1.264 15 C 0.473 3.527 16 O -0.535 6.535 17 C -0.116 4.116 18 H 0.077 0.923 19 C -0.102 4.102 20 C -0.112 4.112 21 C -0.069 4.069 22 C -0.137 4.137 23 C -0.136 4.136 24 C -0.101 4.101 25 H 0.094 0.906 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.117 0.883 30 H 0.271 0.729 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.061 0.939 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.247 -11.551 10.787 15.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.288 6.288 3 C 0.272 3.728 4 O -0.365 6.365 5 C -0.019 4.019 6 N -0.162 5.162 7 C -0.522 4.522 8 H 0.105 0.895 9 C -0.076 4.076 10 N -0.408 5.408 11 Si 0.655 3.345 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.189 1.189 15 C 0.263 3.737 16 O -0.414 6.414 17 C -0.138 4.138 18 H 0.095 0.905 19 C -0.140 4.140 20 C -0.150 4.150 21 C -0.069 4.069 22 C -0.194 4.194 23 C -0.194 4.194 24 C -0.139 4.139 25 H 0.113 0.887 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.120 0.880 29 H 0.134 0.866 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.347 -10.346 10.748 15.102 hybrid contribution 0.643 -0.249 0.009 0.689 sum -1.705 -10.595 10.757 15.194 Atomic orbital electron populations 1.23125 0.77604 1.02801 1.02275 1.86518 1.22570 1.34639 1.85037 1.25173 0.93494 0.81169 0.73008 1.90702 1.66591 1.36154 1.43033 1.21175 0.86299 0.89161 1.05242 1.43303 1.60603 1.06128 1.06148 1.18376 1.18365 1.24754 0.90684 0.89506 1.24889 0.98535 0.92034 0.92144 1.70394 1.33298 1.01785 1.35346 0.87540 0.87618 0.78750 0.80564 1.20234 1.21394 1.18896 1.20030 0.81964 0.87688 0.84045 1.90587 1.50299 1.14774 1.85765 1.22200 0.97096 0.99602 0.94892 0.90500 1.22339 0.96919 1.01736 0.93033 1.22480 0.94470 1.00792 0.97225 1.21163 0.95271 0.95390 0.95108 1.21894 1.00827 0.96773 0.99954 1.21905 1.00419 0.97710 0.99337 1.22228 0.96311 1.02631 0.92773 0.88741 0.92386 0.92253 0.87960 0.86551 0.91832 0.90313 0.91966 0.91752 0.91825 0.93185 0.92967 0.92015 0.92688 0.92897 0.93014 0.92009 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -5.73 10.57 -39.26 -0.41 -6.14 16 3 C 0.43 8.21 8.02 36.00 0.29 8.50 16 4 O -0.48 -11.14 16.18 -18.75 -0.30 -11.44 16 5 C 0.11 2.01 5.75 -5.19 -0.03 1.98 16 6 N -0.44 -10.79 1.77 -116.10 -0.21 -10.99 16 7 C -0.40 -11.35 9.39 -14.93 -0.14 -11.49 16 8 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 9 C 0.14 4.09 3.75 -17.47 -0.07 4.03 16 10 N -0.78 -23.58 13.95 55.50 0.77 -22.81 16 11 Si 0.83 21.28 27.57 -169.99 -4.69 16.59 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 14 H -0.26 -6.77 6.97 56.52 0.39 -6.38 16 15 C 0.47 11.65 5.32 -10.99 -0.06 11.59 16 16 O -0.54 -15.50 13.98 5.55 0.08 -15.43 16 17 C -0.12 -2.18 2.91 -90.11 -0.26 -2.44 16 18 H 0.08 1.26 5.38 -51.93 -0.28 0.98 16 19 C -0.10 -1.77 6.31 -24.74 -0.16 -1.93 16 20 C -0.11 -1.52 5.90 -25.07 -0.15 -1.67 16 21 C -0.07 -0.96 0.94 -153.39 -0.14 -1.10 16 22 C -0.14 -1.86 8.14 37.16 0.30 -1.56 16 23 C -0.14 -1.53 8.16 37.15 0.30 -1.23 16 24 C -0.10 -1.74 5.65 -25.61 -0.14 -1.89 16 25 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 27 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 28 H 0.10 1.55 5.71 -51.93 -0.30 1.25 16 29 H 0.12 1.95 8.04 -51.93 -0.42 1.53 16 30 H 0.27 7.62 8.32 -40.82 -0.34 7.28 16 31 H 0.08 1.55 7.77 -51.93 -0.40 1.15 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.80 7.84 -51.93 -0.41 0.39 16 34 H 0.06 0.76 7.85 -51.92 -0.41 0.36 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.96 7.67 -51.93 -0.40 0.56 16 42 H 0.08 1.57 7.00 -51.93 -0.36 1.20 16 LS Contribution 341.03 15.07 5.14 5.14 Total: -1.00 -35.01 341.03 -5.57 -40.58 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.77 Total: 0.19 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 0.81 Total: 4.31 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.57 Total: -33.80 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.64 Total: -33.01 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.69 Total: 16.59 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.01 -5.57 -40.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358965508.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.394 kcal (2) G-P(sol) polarization free energy of solvation -35.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds