Wall clock time and date at job start Tue Mar 31 2020 06:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 116.99924 * 2 1 4 4 O 1.20827 * 119.99626 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00207 * 180.02562 * 3 2 1 6 6 C 1.50703 * 115.54997 * 325.57919 * 5 3 2 7 7 O 1.21279 * 119.99926 * 214.33318 * 6 5 3 8 8 N 1.34775 * 119.99773 * 34.32918 * 6 5 3 9 9 C 1.46496 * 119.99642 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.46995 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.46626 * 299.99666 * 10 9 8 12 12 C 1.52997 * 109.47164 * 59.99963 * 10 9 8 13 13 C 1.52997 * 109.47127 * 180.02562 * 10 9 8 14 14 C 1.50696 * 109.47055 * 179.97438 * 13 10 9 15 15 H 1.08000 * 120.00290 * 0.02562 * 14 13 10 16 16 C 1.37887 * 120.00079 * 179.97438 * 14 13 10 17 17 N 1.31516 * 119.99685 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00129 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46879 * 60.00177 * 18 16 14 20 20 H 1.48494 * 109.47196 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47151 * 300.00589 * 18 16 14 22 22 C 1.53001 * 117.51868 * 111.28221 * 5 3 2 23 23 C 1.52997 * 60.00080 * 107.47939 * 22 5 3 24 24 H 1.08995 * 109.46918 * 300.00079 * 1 2 3 25 25 H 1.08992 * 109.46949 * 60.00606 * 1 2 3 26 26 H 1.09000 * 109.46392 * 180.02562 * 1 2 3 27 27 H 0.96998 * 120.00166 * 0.02562 * 8 6 5 28 28 H 1.09001 * 109.47464 * 60.00642 * 9 8 6 29 29 H 1.09001 * 109.47459 * 300.00357 * 9 8 6 30 30 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 31 31 H 1.09002 * 109.46719 * 180.02562 * 11 10 9 32 32 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 33 33 H 1.09001 * 109.47375 * 59.99966 * 12 10 9 34 34 H 1.09002 * 109.46777 * 180.02562 * 12 10 9 35 35 H 1.09000 * 109.47140 * 299.99948 * 12 10 9 36 36 H 1.09001 * 109.47289 * 299.99953 * 13 10 9 37 37 H 1.09004 * 109.47261 * 59.99697 * 13 10 9 38 38 H 0.96999 * 119.99910 * 179.97438 * 17 16 14 39 39 H 1.08997 * 117.49878 * 214.96959 * 22 5 3 40 40 H 1.09002 * 117.50200 * 359.97438 * 22 5 3 41 41 H 1.09000 * 117.50332 * 252.50780 * 23 22 5 42 42 H 1.09002 * 117.49716 * 107.49089 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.2744 0.1888 0.7675 7 8 5.3072 0.4352 1.3536 8 7 3.7599 -1.0564 0.8031 9 6 4.4481 -2.1121 1.5502 10 6 3.6609 -3.4185 1.4291 11 6 2.2556 -3.2220 2.0011 12 6 3.5607 -3.8188 -0.0442 13 6 4.3792 -4.5209 2.2098 14 6 3.6037 -5.8075 2.0910 15 1 2.6900 -5.8362 1.5158 16 6 4.0610 -6.9484 2.7159 17 7 5.1738 -6.9136 3.4159 18 14 3.1000 -8.5435 2.5680 19 1 3.0028 -8.9320 1.1381 20 1 3.7971 -9.6134 3.3259 21 1 1.7358 -8.3527 3.1229 22 6 4.2459 1.8041 -1.2651 23 6 4.2006 2.6673 -0.0027 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 2.9341 -1.2535 0.3341 28 1 4.5198 -1.8268 2.5997 29 1 5.4492 -2.2523 1.1425 30 1 1.7436 -2.4365 1.4452 31 1 1.6950 -4.1529 1.9152 32 1 2.3270 -2.9369 3.0506 33 1 4.5619 -3.9587 -0.4517 34 1 2.9995 -4.7493 -0.1305 35 1 3.0487 -3.0333 -0.6001 36 1 5.3806 -4.6610 1.8028 37 1 4.4503 -4.2355 3.2594 38 1 5.4954 -7.7161 3.8558 39 1 5.2052 1.3666 -1.5415 40 1 3.6046 2.0948 -2.0972 41 1 3.5295 3.5262 -0.0040 42 1 5.1302 2.7976 0.5514 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359759664.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:13 Heat of formation + Delta-G solvation = -110.262906 kcal Electronic energy + Delta-G solvation = -23256.661531 eV Core-core repulsion = 19816.494301 eV Total energy + Delta-G solvation = -3440.167230 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.24020 -39.54726 -37.75431 -36.84992 -35.81568 -33.62145 -32.08633 -28.63076 -27.22167 -26.66781 -26.49665 -24.91304 -23.02079 -22.88350 -21.69719 -20.09083 -18.85688 -17.77713 -17.24170 -16.73785 -16.33677 -15.90296 -15.53164 -15.00551 -14.59230 -14.49327 -14.29045 -13.62273 -13.43749 -13.24190 -13.04143 -12.72739 -12.29642 -12.16680 -12.05267 -11.87338 -11.57725 -11.17548 -11.11769 -11.00176 -10.96109 -10.86843 -10.77337 -10.62197 -10.40060 -10.26561 -9.87449 -9.87071 -9.16989 -8.93720 -8.74235 -8.35785 -6.00009 -4.01289 1.66590 2.17813 2.61656 3.25186 3.31531 3.37184 3.38375 3.45811 4.24619 4.27866 4.44613 4.53017 4.70825 4.89126 4.95969 5.21269 5.25627 5.35445 5.39004 5.51711 5.55203 5.62573 5.76788 5.77702 6.01158 6.19779 6.24602 6.27391 6.40098 6.56144 6.63644 6.76361 7.06128 7.07595 7.12782 7.35380 7.63681 7.74199 7.76397 7.98608 8.34710 8.41204 9.03187 9.61667 11.11447 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.026518 B = 0.004041 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.629907 B = 6927.359560 C = 7620.584730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.505 3.495 4 O -0.498 6.498 5 C -0.183 4.183 6 C 0.546 3.454 7 O -0.537 6.537 8 N -0.707 5.707 9 C 0.126 3.874 10 C -0.072 4.072 11 C -0.128 4.128 12 C -0.128 4.128 13 C 0.036 3.964 14 C -0.511 4.511 15 H 0.059 0.941 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.121 4.121 23 C -0.109 4.109 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.108 0.892 27 H 0.408 0.592 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.032 0.968 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.030 0.970 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.260 0.740 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.117 0.883 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.874 15.744 -9.771 19.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.348 3.652 4 O -0.386 6.386 5 C -0.188 4.188 6 C 0.330 3.670 7 O -0.415 6.415 8 N -0.361 5.361 9 C 0.003 3.997 10 C -0.072 4.072 11 C -0.186 4.186 12 C -0.185 4.185 13 C -0.001 4.001 14 C -0.550 4.550 15 H 0.077 0.923 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.158 4.158 23 C -0.146 4.146 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.127 0.873 27 H 0.248 0.752 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.049 0.951 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.136 0.864 40 H 0.130 0.870 41 H 0.135 0.865 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.280 16.047 -9.234 19.550 hybrid contribution -1.165 -1.146 -0.141 1.640 sum -7.445 14.901 -9.375 19.114 Atomic orbital electron populations 1.23386 0.75078 1.04496 1.02699 1.86311 1.24333 1.32688 1.83821 1.22098 0.89322 0.81663 0.72141 1.90664 1.66297 1.36228 1.45365 1.21211 0.88517 1.00687 1.08395 1.18878 0.84727 0.82671 0.80717 1.90714 1.23789 1.81914 1.45042 1.46360 1.28399 1.08806 1.52565 1.21706 0.96007 0.86233 0.95735 1.20898 0.95732 0.93778 0.96815 1.21775 0.96348 1.00767 0.99684 1.21765 1.01257 1.00602 0.94870 1.19089 0.95258 0.91125 0.94639 1.21143 1.08607 0.93970 1.31244 0.92309 1.25009 0.95052 0.98900 0.95479 1.69954 1.21332 1.28842 1.33268 0.86714 0.80089 0.83427 0.78082 1.20328 1.21407 1.20350 1.23169 1.01921 1.00529 0.90207 1.23199 1.02595 0.89768 0.99087 0.91540 0.91627 0.87338 0.75190 0.91668 0.91583 0.94920 0.91451 0.93461 0.93351 0.91409 0.95130 0.96318 0.96337 0.92986 0.86382 0.87046 0.86461 0.85753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.05 7.65 -39.26 -0.30 -4.35 16 3 C 0.51 6.27 7.49 36.00 0.27 6.54 16 4 O -0.50 -6.83 16.01 -18.75 -0.30 -7.13 16 5 C -0.18 -2.22 2.57 -156.81 -0.40 -2.63 16 6 C 0.55 8.42 7.38 -10.98 -0.08 8.34 16 7 O -0.54 -9.89 16.26 5.56 0.09 -9.80 16 8 N -0.71 -10.87 4.77 -60.29 -0.29 -11.15 16 9 C 0.13 2.25 4.56 -4.04 -0.02 2.23 16 10 C -0.07 -1.36 0.54 -154.51 -0.08 -1.45 16 11 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 12 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 13 C 0.04 0.88 4.04 -27.89 -0.11 0.77 16 14 C -0.51 -13.44 7.65 -34.44 -0.26 -13.70 16 15 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 17 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 18 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 C -0.12 -1.08 9.94 -26.73 -0.27 -1.34 16 23 C -0.11 -1.09 9.56 -26.73 -0.26 -1.34 16 24 H 0.07 0.56 8.13 -51.93 -0.42 0.13 16 25 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 26 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.41 5.71 3.32 -40.82 -0.14 5.57 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 31 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 35 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.12 1.06 7.67 -51.93 -0.40 0.66 16 42 H 0.12 1.26 7.67 -51.93 -0.40 0.87 16 LS Contribution 343.82 15.07 5.18 5.18 Total: -1.00 -31.67 343.82 -5.96 -37.63 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.41 Total: 2.77 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 0.35 Total: -3.62 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.45 Total: -36.66 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.51 Total: -21.28 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.67 -5.96 -37.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359759664.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.632 kcal (2) G-P(sol) polarization free energy of solvation -31.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds