Wall clock time and date at job start Tue Mar 31 2020 05:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99706 * 2 1 4 4 H 1.48494 * 109.47038 * 239.99655 * 3 2 1 5 5 H 1.48504 * 109.47314 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46960 * 119.99859 * 3 2 1 7 7 C 1.37869 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00462 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99888 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46874 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46874 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99950 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99851 * 179.97438 * 11 10 9 14 14 C 1.47151 * 120.98395 * 4.95391 * 13 11 10 15 15 C 1.53292 * 108.38288 * 129.48757 * 14 13 11 16 16 O 1.42955 * 109.22457 * 52.30417 * 15 14 13 17 17 C 1.42965 * 114.16828 * 297.42204 * 16 15 14 18 18 C 1.47151 * 120.98078 * 184.98340 * 13 11 10 19 19 H 1.08997 * 109.71651 * 110.77240 * 18 13 11 20 20 C 1.53006 * 109.68254 * 350.23032 * 18 13 11 21 21 H 1.08997 * 110.54529 * 58.39546 * 20 18 13 22 22 C 1.55225 * 110.77912 * 181.25437 * 20 18 13 23 23 C 1.54810 * 101.98464 * 155.50276 * 22 20 18 24 24 C 1.54096 * 104.30597 * 339.26319 * 23 22 20 25 25 O 1.43741 * 107.29602 * 357.90509 * 24 23 22 26 26 H 0.96998 * 119.99893 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47194 * 59.99933 * 9 7 2 28 28 H 1.08998 * 109.47313 * 299.99308 * 9 7 2 29 29 H 1.08998 * 109.47309 * 59.99949 * 10 9 7 30 30 H 1.09000 * 109.47143 * 299.99274 * 10 9 7 31 31 H 1.09003 * 109.68169 * 9.76820 * 14 13 11 32 32 H 1.08991 * 109.71732 * 249.23133 * 14 13 11 33 33 H 1.09002 * 109.51444 * 292.38187 * 15 14 13 34 34 H 1.08998 * 109.55705 * 172.25421 * 15 14 13 35 35 H 1.09003 * 109.51141 * 302.65456 * 17 16 15 36 36 H 1.09005 * 109.55256 * 182.53073 * 17 16 15 37 37 H 1.09001 * 110.88734 * 37.36961 * 22 20 18 38 38 H 1.08993 * 111.02478 * 273.70063 * 22 20 18 39 39 H 1.08995 * 110.48760 * 220.51706 * 23 22 20 40 40 H 1.09000 * 110.48494 * 98.00461 * 23 22 20 41 41 H 1.09012 * 109.87712 * 117.32846 * 24 23 22 42 42 H 1.08996 * 109.88090 * 238.47785 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 6 1.4920 -4.9672 0.0025 12 8 0.2792 -4.9672 0.0024 13 7 2.1659 -6.1343 0.0031 14 6 3.6331 -6.1618 0.1121 15 6 4.0169 -7.1428 1.2258 16 8 3.3742 -8.3977 0.9897 17 6 1.9461 -8.3386 1.0184 18 6 1.4563 -7.4188 -0.1059 19 1 1.6688 -7.8755 -1.0725 20 6 -0.0498 -7.1891 0.0356 21 1 -0.4050 -6.4987 -0.7293 22 6 -0.8217 -8.5334 -0.0441 23 6 -2.1238 -8.2026 0.7252 24 6 -1.7567 -6.9784 1.5862 25 8 -0.3669 -6.6941 1.3542 26 1 -0.4850 0.8400 0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8903 29 1 2.8715 -3.6038 0.8922 30 1 2.8727 -3.6047 -0.8878 31 1 4.0018 -5.1657 0.3572 32 1 4.0659 -6.4912 -0.8324 33 1 3.6956 -6.7447 2.1883 34 1 5.0978 -7.2829 1.2322 35 1 1.6173 -7.9448 1.9802 36 1 1.5366 -9.3386 0.8753 37 1 -0.2678 -9.3298 0.4530 38 1 -1.0381 -8.7994 -1.0788 39 1 -2.4163 -9.0403 1.3581 40 1 -2.9250 -7.9533 0.0295 41 1 -2.3643 -6.1226 1.2918 42 1 -1.9178 -7.2048 2.6401 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360626552.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:35 Heat of formation + Delta-G solvation = -112.488930 kcal Electronic energy + Delta-G solvation = -23877.074859 eV Core-core repulsion = 20436.811102 eV Total energy + Delta-G solvation = -3440.263758 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.62398 -38.54898 -38.01315 -34.47730 -33.57168 -32.59298 -31.76790 -30.70756 -28.72655 -26.96478 -25.75130 -24.33365 -22.46198 -22.02416 -21.14958 -20.46858 -18.54354 -17.16788 -16.82184 -16.09718 -15.82265 -15.69661 -15.54384 -15.31653 -14.83212 -14.53420 -14.43389 -14.05182 -13.64577 -13.30036 -13.15842 -12.54000 -12.19337 -12.12425 -12.04149 -11.65783 -11.43023 -11.26805 -11.14599 -11.00554 -10.90381 -10.74443 -10.59914 -10.58523 -10.13844 -9.92942 -9.55278 -9.33414 -9.09242 -8.54318 -8.30732 -8.13860 -5.94619 -3.98881 3.11501 3.30762 3.35062 3.39777 3.41517 3.70531 4.11379 4.47693 4.57308 4.66762 4.74767 4.92326 4.97462 5.04562 5.10406 5.20934 5.29017 5.39276 5.40298 5.44530 5.55853 5.58481 5.70675 5.73413 5.76075 5.81790 5.91473 6.04545 6.12637 6.19618 6.24299 6.30474 6.72619 6.91961 7.00999 7.24862 7.75649 7.78426 7.89372 8.09331 8.40830 8.83233 9.09547 9.64464 11.16279 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.019557 B = 0.004813 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.390887 B = 5816.104283 C = 6965.944707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.040 3.960 10 C -0.127 4.127 11 C 0.514 3.486 12 O -0.504 6.504 13 N -0.625 5.625 14 C 0.077 3.923 15 C 0.046 3.954 16 O -0.384 6.384 17 C 0.052 3.948 18 C 0.121 3.879 19 H 0.085 0.915 20 C 0.089 3.911 21 H 0.104 0.896 22 C -0.164 4.164 23 C -0.152 4.152 24 C 0.051 3.949 25 O -0.350 6.350 26 H 0.261 0.739 27 H 0.022 0.978 28 H 0.024 0.976 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.103 0.897 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.296 -19.427 0.897 19.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.565 4.565 8 H 0.072 0.928 9 C 0.002 3.998 10 C -0.167 4.167 11 C 0.304 3.696 12 O -0.378 6.378 13 N -0.363 5.363 14 C -0.047 4.047 15 C -0.031 4.031 16 O -0.302 6.302 17 C -0.025 4.025 18 C 0.017 3.983 19 H 0.103 0.897 20 C 0.031 3.969 21 H 0.121 0.879 22 C -0.202 4.202 23 C -0.190 4.190 24 C -0.027 4.027 25 O -0.269 6.269 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.042 0.958 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.121 0.879 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.699 -19.325 1.013 19.539 hybrid contribution 0.214 1.033 -0.084 1.058 sum 2.914 -18.292 0.929 18.546 Atomic orbital electron populations 1.69990 1.06047 1.26635 1.50203 1.25009 0.94804 0.99155 0.95319 0.86667 0.79564 0.83249 0.78533 1.20266 1.21294 1.20260 1.21186 0.92844 0.91078 1.51408 0.92754 1.18877 0.93112 0.89250 0.98536 1.21887 1.00733 0.92120 1.01983 1.21491 0.88578 0.85000 0.74520 1.90643 1.13908 1.85980 1.47296 1.48321 1.06470 1.05393 1.76120 1.22357 0.80957 1.01831 0.99555 1.22996 0.98070 0.84498 0.97548 1.87908 1.18916 1.30566 1.92853 1.23043 0.80803 0.99906 0.98777 1.21849 0.91786 0.85415 0.99233 0.89748 1.23397 0.91980 0.92198 0.89290 0.87878 1.23422 0.96836 0.98890 1.01058 1.22876 0.98099 0.98760 0.99239 1.23001 0.84460 0.96088 0.99130 1.88936 1.24307 1.81524 1.32117 0.92940 0.95961 0.95772 0.90563 0.90513 0.88119 0.90993 0.92459 0.87854 0.91478 0.88304 0.90899 0.90416 0.91067 0.90933 0.92350 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.54 13.29 55.43 0.74 -26.81 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.53 -15.01 9.11 -34.44 -0.31 -15.32 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.04 1.08 4.26 -27.88 -0.12 0.96 16 10 C -0.13 -2.63 4.09 -27.88 -0.11 -2.75 16 11 C 0.51 10.11 7.44 -10.98 -0.08 10.03 16 12 O -0.50 -11.43 10.66 -18.63 -0.20 -11.63 16 13 N -0.63 -9.68 3.02 -164.75 -0.50 -10.18 16 14 C 0.08 0.92 6.52 -3.54 -0.02 0.90 16 15 C 0.05 0.51 6.98 37.31 0.26 0.77 16 16 O -0.38 -4.79 10.74 -35.23 -0.38 -5.17 16 17 C 0.05 0.64 5.74 37.31 0.21 0.85 16 18 C 0.12 1.66 3.09 -67.42 -0.21 1.45 16 19 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 20 C 0.09 1.32 2.02 -25.55 -0.05 1.27 16 21 H 0.10 1.84 6.15 -51.93 -0.32 1.52 16 22 C -0.16 -1.78 6.51 -24.60 -0.16 -1.94 16 23 C -0.15 -1.65 7.00 -25.21 -0.18 -1.83 16 24 C 0.05 0.71 7.70 37.73 0.29 1.00 16 25 O -0.35 -6.03 8.22 -59.42 -0.49 -6.52 16 26 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 27 H 0.02 0.65 8.10 -51.93 -0.42 0.23 16 28 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 29 H 0.08 1.46 7.46 -51.93 -0.39 1.08 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.10 1.17 6.08 -51.93 -0.32 0.85 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.93 7.37 -51.93 -0.38 0.55 16 36 H 0.10 0.99 6.58 -51.93 -0.34 0.65 16 37 H 0.07 0.69 6.10 -51.93 -0.32 0.37 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 326.11 15.07 4.91 4.91 Total: -1.00 -34.04 326.11 -8.19 -42.23 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.67 Total: -0.56 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -0.58 Total: -3.00 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.24 Total: -36.98 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -1.07 Total: -23.32 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.04 -8.19 -42.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360626552.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.260 kcal (2) G-P(sol) polarization free energy of solvation -34.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds