Wall clock time and date at job start Tue Mar 31 2020 05:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00288 * 2 1 4 4 H 1.48504 * 109.47198 * 240.00559 * 3 2 1 5 5 H 1.48506 * 109.46822 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47035 * 120.00210 * 3 2 1 7 7 C 1.37881 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00644 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99671 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46916 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46916 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00013 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99819 * 180.02562 * 11 10 9 14 14 C 1.47151 * 120.97899 * 6.33587 * 13 11 10 15 15 C 1.53299 * 108.38110 * 230.55833 * 14 13 11 16 16 O 1.42962 * 109.22577 * 307.69818 * 15 14 13 17 17 C 1.42965 * 114.16158 * 62.57916 * 16 15 14 18 18 C 1.47152 * 120.97924 * 186.36212 * 13 11 10 19 19 H 1.08992 * 109.70901 * 249.18157 * 18 13 11 20 20 C 1.52997 * 109.68104 * 9.71739 * 18 13 11 21 21 H 1.09000 * 109.82480 * 301.36364 * 20 18 13 22 22 C 1.54379 * 109.83215 * 62.34582 * 20 18 13 23 23 C 1.55307 * 102.25035 * 140.86742 * 22 20 18 24 24 C 1.54941 * 100.94566 * 325.86704 * 23 22 20 25 25 O 1.43240 * 109.82564 * 180.47772 * 20 18 13 26 26 H 0.97000 * 119.99918 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.46893 * 60.00561 * 9 7 2 28 28 H 1.08995 * 109.47145 * 300.00132 * 9 7 2 29 29 H 1.09007 * 109.46833 * 60.00584 * 10 9 7 30 30 H 1.08995 * 109.47369 * 300.00053 * 10 9 7 31 31 H 1.09000 * 109.68113 * 110.84090 * 14 13 11 32 32 H 1.08997 * 109.71766 * 350.29852 * 14 13 11 33 33 H 1.09009 * 109.51261 * 187.77840 * 15 14 13 34 34 H 1.08996 * 109.51481 * 67.62718 * 15 14 13 35 35 H 1.09008 * 109.50845 * 177.49629 * 17 16 15 36 36 H 1.08997 * 109.51231 * 57.35149 * 17 16 15 37 37 H 1.08998 * 110.84746 * 259.05599 * 22 20 18 38 38 H 1.08998 * 110.85000 * 22.47843 * 22 20 18 39 39 H 1.09005 * 111.12527 * 207.94523 * 23 22 20 40 40 H 1.09000 * 111.12561 * 83.79151 * 23 22 20 41 41 H 1.09007 * 110.30913 * 277.53045 * 24 23 22 42 42 H 1.08997 * 110.31546 * 155.36215 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4917 -4.9672 -0.0025 12 8 0.2789 -4.9672 -0.0024 13 7 2.1656 -6.1345 -0.0031 14 6 3.6302 -6.1635 0.1361 15 6 4.2054 -7.0331 -0.9878 16 8 3.5425 -8.2998 -0.9892 17 6 2.1395 -8.2257 -1.2537 18 6 1.4584 -7.4173 -0.1435 19 1 1.5076 -7.9688 0.7952 20 6 -0.0036 -7.1617 -0.5149 21 1 -0.4785 -6.5503 0.2524 22 6 -0.0796 -6.4447 -1.8800 23 6 -1.3065 -7.1280 -2.5433 24 6 -1.1783 -8.5680 -1.9857 25 8 -0.6978 -8.4083 -0.6415 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5567 -0.8904 28 1 0.6247 -2.5571 0.8896 29 1 2.8725 -3.6048 0.8878 30 1 2.8712 -3.6040 -0.8922 31 1 3.8987 -6.5887 1.1031 32 1 4.0273 -5.1516 0.0569 33 1 5.2728 -7.1811 -0.8237 34 1 4.0488 -6.5392 -1.9467 35 1 1.7205 -9.2317 -1.2808 36 1 1.9753 -7.7362 -2.2136 37 1 -0.2546 -5.3770 -1.7481 38 1 0.8262 -6.6189 -2.4606 39 1 -1.2216 -7.1185 -3.6300 40 1 -2.2377 -6.6629 -2.2199 41 1 -0.4640 -9.1406 -2.5774 42 1 -2.1504 -9.0610 -1.9840 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360626554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:42 Heat of formation + Delta-G solvation = -103.826331 kcal Electronic energy + Delta-G solvation = -23962.427863 eV Core-core repulsion = 20522.539743 eV Total energy + Delta-G solvation = -3439.888119 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.00575 -38.69291 -38.23053 -34.63391 -33.73929 -32.54263 -31.75764 -30.80497 -28.77883 -27.20729 -25.79471 -24.29951 -22.68026 -21.88646 -21.73722 -20.26337 -18.62780 -17.44819 -16.88608 -16.21522 -15.89860 -15.87590 -15.64205 -15.37127 -15.00558 -14.79162 -14.44773 -13.91512 -13.91108 -13.39487 -13.08558 -12.66399 -12.37067 -12.28417 -12.20784 -11.67306 -11.48584 -11.25256 -11.10808 -11.01048 -10.93757 -10.68295 -10.62246 -10.50679 -10.18889 -9.98633 -9.74648 -9.54224 -9.17271 -8.62152 -8.38505 -8.31486 -6.01167 -4.05839 2.94365 3.02186 3.30864 3.36173 3.37412 3.64720 4.04082 4.42463 4.56798 4.63141 4.76769 4.86170 4.95319 4.99762 5.01946 5.15531 5.22080 5.33114 5.34081 5.37030 5.49032 5.58828 5.67591 5.71546 5.76656 5.82214 5.92397 6.04026 6.11197 6.13935 6.26826 6.52735 6.67760 6.79228 6.94234 7.13088 7.60511 7.67630 7.78445 8.00234 8.32303 8.60822 9.01799 9.58111 11.09627 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.020570 B = 0.004743 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.877673 B = 5901.521742 C = 6896.966150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.055 0.945 9 C 0.039 3.961 10 C -0.129 4.129 11 C 0.512 3.488 12 O -0.518 6.518 13 N -0.621 5.621 14 C 0.075 3.925 15 C 0.045 3.955 16 O -0.381 6.381 17 C 0.050 3.950 18 C 0.104 3.896 19 H 0.081 0.919 20 C 0.078 3.922 21 H 0.131 0.869 22 C -0.155 4.155 23 C -0.156 4.156 24 C 0.050 3.950 25 O -0.387 6.387 26 H 0.262 0.738 27 H 0.023 0.977 28 H 0.024 0.976 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.056 0.944 35 H 0.104 0.896 36 H 0.059 0.941 37 H 0.111 0.889 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.053 0.947 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.051 -16.845 -4.121 18.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.169 4.169 11 C 0.303 3.697 12 O -0.394 6.394 13 N -0.359 5.359 14 C -0.048 4.048 15 C -0.033 4.033 16 O -0.300 6.300 17 C -0.027 4.027 18 C 0.000 4.000 19 H 0.099 0.901 20 C 0.021 3.979 21 H 0.148 0.852 22 C -0.192 4.192 23 C -0.194 4.194 24 C -0.027 4.027 25 O -0.306 6.306 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.075 0.925 35 H 0.122 0.878 36 H 0.077 0.923 37 H 0.129 0.871 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.071 0.929 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.287 -17.028 -3.919 17.991 hybrid contribution 0.560 1.248 -0.246 1.390 sum 4.847 -15.779 -4.165 17.024 Atomic orbital electron populations 1.69976 1.06055 1.26766 1.49972 1.25006 0.94810 0.99199 0.95208 0.86663 0.79577 0.83195 0.78562 1.20252 1.21256 1.20227 1.21159 0.92856 0.90995 1.51718 0.92714 1.18898 0.93091 0.89284 0.98588 1.21916 1.00830 0.91809 1.02299 1.21583 0.88456 0.85240 0.74389 1.90520 1.14274 1.86285 1.48324 1.48364 1.07023 1.05445 1.75080 1.22410 0.80269 1.02535 0.99574 1.23018 0.97382 0.84843 0.98016 1.87943 1.20710 1.28831 1.92467 1.23146 0.81076 1.01411 0.97087 1.22178 0.93023 0.85257 0.99579 0.90091 1.23609 0.90197 0.83574 1.00526 0.85160 1.23589 0.97457 1.03740 0.94403 1.23248 0.99878 0.95590 1.00686 1.23334 0.98835 0.96728 0.83755 1.88415 1.73363 1.40200 1.28659 0.92853 0.95864 0.95757 0.90215 0.90303 0.90689 0.87892 0.87691 0.92523 0.87805 0.92283 0.87071 0.91608 0.90511 0.90248 0.92916 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.52 9.11 -34.44 -0.31 -14.84 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.47 4.01 -27.88 -0.11 -2.58 16 11 C 0.51 9.21 6.81 -10.98 -0.07 9.14 16 12 O -0.52 -10.72 9.64 5.56 0.05 -10.67 16 13 N -0.62 -9.00 2.96 -164.75 -0.49 -9.49 16 14 C 0.08 0.85 6.55 -3.53 -0.02 0.82 16 15 C 0.05 0.46 6.98 37.31 0.26 0.72 16 16 O -0.38 -4.69 10.74 -35.23 -0.38 -5.07 16 17 C 0.05 0.61 5.90 37.31 0.22 0.83 16 18 C 0.10 1.45 3.12 -67.43 -0.21 1.24 16 19 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 20 C 0.08 1.19 2.71 -26.01 -0.07 1.12 16 21 H 0.13 2.41 5.80 -52.24 -0.30 2.11 16 22 C -0.15 -2.29 4.96 -24.79 -0.12 -2.41 16 23 C -0.16 -1.92 7.15 -24.48 -0.18 -2.10 16 24 C 0.05 0.58 7.78 38.18 0.30 0.87 16 25 O -0.39 -5.64 10.60 -35.23 -0.37 -6.01 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.02 0.65 8.10 -51.92 -0.42 0.22 16 28 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 29 H 0.08 1.41 7.77 -51.92 -0.40 1.01 16 30 H 0.08 1.38 7.91 -51.93 -0.41 0.97 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.10 1.07 6.04 -51.93 -0.31 0.76 16 33 H 0.11 0.80 8.14 -51.92 -0.42 0.37 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.10 1.19 7.99 -51.92 -0.42 0.77 16 36 H 0.06 0.72 5.70 -51.93 -0.30 0.42 16 37 H 0.11 2.01 5.81 -51.93 -0.30 1.71 16 38 H 0.07 0.91 5.50 -51.93 -0.29 0.63 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 322.82 15.07 4.86 4.86 Total: -1.00 -31.67 322.82 -7.64 -39.31 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.49 Total: 1.61 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -0.54 Total: -4.70 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.25 Total: -35.54 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.70 Total: -21.75 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.67 -7.64 -39.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360626554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.517 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds