Wall clock time and date at job start Tue Mar 31 2020 06:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47126 * 2 1 4 4 C 1.53004 * 109.47119 * 239.99970 * 2 1 3 5 5 C 1.50699 * 109.46969 * 60.00377 * 4 2 1 6 6 O 1.20824 * 119.99948 * 359.97438 * 5 4 2 7 7 O 1.34224 * 119.99869 * 179.97438 * 5 4 2 8 8 C 1.53006 * 109.46923 * 120.00238 * 2 1 3 9 9 C 1.50700 * 109.46608 * 300.00081 * 8 2 1 10 10 O 1.21273 * 120.00686 * 359.16367 * 9 8 2 11 11 N 1.34779 * 119.99286 * 179.16782 * 9 8 2 12 12 C 1.46506 * 119.99823 * 185.03436 * 11 9 8 13 13 C 1.53001 * 109.47114 * 184.20870 * 12 11 9 14 14 C 1.50697 * 115.54881 * 294.93752 * 13 12 11 15 15 H 1.08001 * 119.99839 * 115.10256 * 14 13 12 16 16 C 1.37880 * 119.99996 * 294.82325 * 14 13 12 17 17 N 1.31513 * 119.99757 * 175.07655 * 16 14 13 18 18 Si 1.86799 * 120.00026 * 355.07491 * 16 14 13 19 19 H 1.48504 * 109.46929 * 93.86916 * 18 16 14 20 20 H 1.48491 * 109.47179 * 213.86825 * 18 16 14 21 21 H 1.48498 * 109.47099 * 333.87376 * 18 16 14 22 22 C 1.52995 * 117.49528 * 80.61060 * 13 12 11 23 23 C 1.53004 * 117.49460 * 149.27055 * 13 12 11 24 24 H 1.08994 * 109.47006 * 299.99942 * 1 2 3 25 25 H 1.09002 * 109.46427 * 59.99936 * 1 2 3 26 26 H 1.09000 * 109.47350 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47346 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47760 * 299.99979 * 3 2 1 29 29 H 1.09008 * 109.46965 * 60.00294 * 3 2 1 30 30 H 1.08999 * 109.46666 * 180.02562 * 4 2 1 31 31 H 1.09000 * 109.47252 * 300.00356 * 4 2 1 32 32 H 0.96702 * 117.00453 * 180.02562 * 7 5 4 33 33 H 1.08992 * 109.47075 * 179.97438 * 8 2 1 34 34 H 1.09000 * 109.47085 * 59.99866 * 8 2 1 35 35 H 0.96998 * 120.00244 * 5.03258 * 11 9 8 36 36 H 1.09005 * 109.47057 * 64.20480 * 12 11 9 37 37 H 1.09003 * 109.46943 * 304.21004 * 12 11 9 38 38 H 0.96999 * 119.99916 * 179.97438 * 17 16 14 39 39 H 1.09004 * 117.49864 * 214.99869 * 22 13 12 40 40 H 1.08999 * 117.50521 * 0.02562 * 22 13 12 41 41 H 1.08995 * 117.49902 * 359.96922 * 23 13 12 42 42 H 1.08998 * 117.49579 * 144.97871 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.5378 -0.0108 -2.4797 6 8 0.8428 0.9713 -2.3688 7 8 1.8625 -0.4691 -3.6988 8 6 2.0400 -0.7213 1.2493 9 6 1.5376 -0.0109 2.4797 10 8 0.8529 0.9839 2.3685 11 7 1.8493 -0.4812 3.7037 12 6 1.2717 0.1426 4.8969 13 6 1.8642 -0.5067 6.1493 14 6 1.5265 -1.9617 6.3488 15 1 2.3074 -2.7069 6.3148 16 6 0.2212 -2.3410 6.5803 17 7 -0.0889 -3.6167 6.6580 18 14 -1.1065 -1.0429 6.7838 19 1 -1.7594 -0.7930 5.4736 20 1 -2.1198 -1.5198 7.7589 21 1 -0.4957 0.2163 7.2805 22 6 3.2464 -0.0335 6.6037 23 6 2.0008 0.3647 7.3994 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6768 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 3.1301 -0.7216 -1.2490 31 1 1.6767 -1.7489 -1.2493 32 1 1.5171 0.0201 -4.4581 33 1 3.1299 -0.7218 1.2491 34 1 1.6767 -1.7490 1.2492 35 1 2.4559 -1.2326 3.7946 36 1 0.1906 0.0036 4.8924 37 1 1.5011 1.2082 4.8970 38 1 -1.0071 -3.8835 6.8213 39 1 3.9115 -0.7746 7.0470 40 1 3.7335 0.7406 6.0108 41 1 1.6691 1.4006 7.3295 42 1 1.8461 -0.1144 8.3662 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362336868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:30 Heat of formation + Delta-G solvation = -111.711578 kcal Electronic energy + Delta-G solvation = -23025.452614 eV Core-core repulsion = 19585.222564 eV Total energy + Delta-G solvation = -3440.230049 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.81706 -39.51935 -37.41501 -36.65050 -35.51343 -33.41446 -32.21134 -29.39961 -28.23980 -27.01691 -26.35252 -24.88984 -22.41179 -21.66200 -20.06781 -19.39266 -18.73116 -18.16928 -16.90339 -16.48213 -16.25601 -16.13366 -15.36203 -14.97424 -14.82990 -14.22565 -14.10412 -13.79368 -13.47099 -12.98175 -12.72713 -12.62123 -12.42489 -12.27157 -12.13788 -11.98619 -11.32538 -11.13105 -11.11076 -11.01034 -10.95451 -10.68422 -10.61326 -10.58251 -10.27101 -10.07494 -9.59929 -9.20431 -9.08157 -8.79128 -8.51928 -8.25611 -6.20532 -4.23579 2.06312 2.85183 3.10806 3.26854 3.37148 3.42932 3.77850 4.36486 4.56520 4.77261 4.82479 4.91209 5.15869 5.16771 5.32314 5.38181 5.46883 5.56250 5.66779 5.68581 5.81598 5.95283 6.10695 6.12352 6.17104 6.20623 6.22158 6.24108 6.42137 6.46905 6.58959 6.68963 6.73275 6.78131 6.93450 7.05898 7.20548 7.64511 7.76531 8.18725 8.38130 8.79294 8.81642 9.43149 10.90412 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.025629 B = 0.003988 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.248008 B = 7019.926681 C = 7310.260685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.031 4.031 3 C -0.166 4.166 4 C -0.107 4.107 5 C 0.478 3.522 6 O -0.500 6.500 7 O -0.523 6.523 8 C -0.134 4.134 9 C 0.508 3.492 10 O -0.547 6.547 11 N -0.703 5.703 12 C 0.154 3.846 13 C -0.017 4.017 14 C -0.490 4.490 15 H 0.078 0.922 16 C 0.084 3.916 17 N -0.893 5.893 18 Si 0.866 3.134 19 H -0.278 1.278 20 H -0.292 1.292 21 H -0.249 1.249 22 C -0.180 4.180 23 C -0.186 4.186 24 H 0.087 0.913 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.038 0.962 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.407 0.593 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.406 0.594 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.266 0.734 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.920 4.978 -15.450 17.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.031 4.031 3 C -0.222 4.222 4 C -0.145 4.145 5 C 0.320 3.680 6 O -0.388 6.388 7 O -0.335 6.335 8 C -0.174 4.174 9 C 0.294 3.706 10 O -0.427 6.427 11 N -0.352 5.352 12 C 0.030 3.970 13 C -0.019 4.019 14 C -0.527 4.527 15 H 0.096 0.904 16 C -0.120 4.120 17 N -0.529 5.529 18 Si 0.694 3.306 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.172 1.172 22 C -0.217 4.217 23 C -0.224 4.224 24 H 0.106 0.894 25 H 0.090 0.910 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.265 0.735 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.241 0.759 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.228 5.580 -15.091 16.918 hybrid contribution -0.734 0.334 -0.261 0.847 sum 4.494 5.915 -15.352 17.055 Atomic orbital electron populations 1.22335 0.93377 1.01382 1.05261 1.20048 0.97274 0.95737 0.90080 1.22339 0.99085 0.95450 1.05367 1.21544 1.03104 1.00725 0.89110 1.23545 0.77200 0.82662 0.84554 1.90651 1.35388 1.26098 1.86650 1.84555 1.72563 1.59270 1.17093 1.21724 1.02266 1.00724 0.92691 1.20407 0.80690 0.84755 0.84714 1.90539 1.39589 1.26055 1.86471 1.45893 1.48321 1.35782 1.05194 1.21059 0.97193 0.94663 0.84042 1.19613 0.95958 0.95677 0.90620 1.20235 0.94356 0.88145 1.49981 0.90423 1.24907 0.98425 0.94964 0.93687 1.69887 1.19448 1.15209 1.48374 0.87032 0.81786 0.83574 0.78239 1.20427 1.21831 1.17250 1.22794 0.91400 1.02669 1.04873 1.23033 1.02763 0.98812 0.97790 0.89413 0.90980 0.94010 0.94244 0.91017 0.89274 0.87677 0.87577 0.73451 0.89002 0.88640 0.75902 0.92645 0.93285 0.92451 0.89646 0.90931 0.91133 0.89321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 7.88 37.16 0.29 -2.14 16 2 C -0.03 -0.38 0.51 -154.50 -0.08 -0.46 16 3 C -0.17 -2.26 7.88 37.16 0.29 -1.96 16 4 C -0.11 -0.99 4.88 -27.88 -0.14 -1.13 16 5 C 0.48 4.93 7.74 36.01 0.28 5.21 16 6 O -0.50 -6.67 12.11 -18.75 -0.23 -6.89 16 7 O -0.52 -4.07 13.42 -39.24 -0.53 -4.60 16 8 C -0.13 -1.66 4.77 -27.88 -0.13 -1.79 16 9 C 0.51 8.64 7.24 -10.98 -0.08 8.56 16 10 O -0.55 -10.84 11.34 5.56 0.06 -10.77 16 11 N -0.70 -12.75 5.48 -60.29 -0.33 -13.08 16 12 C 0.15 3.21 5.14 -4.04 -0.02 3.19 16 13 C -0.02 -0.38 0.84 -155.66 -0.13 -0.51 16 14 C -0.49 -12.59 9.16 -34.44 -0.32 -12.91 16 15 H 0.08 2.16 8.06 -52.49 -0.42 1.73 16 16 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 17 N -0.89 -25.92 13.96 55.43 0.77 -25.14 16 18 Si 0.87 21.07 24.92 -169.99 -4.24 16.83 16 19 H -0.28 -6.90 7.04 56.52 0.40 -6.51 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.25 -5.71 5.76 56.52 0.33 -5.38 16 22 C -0.18 -3.38 9.96 -26.69 -0.27 -3.65 16 23 C -0.19 -3.74 8.09 -26.69 -0.22 -3.96 16 24 H 0.09 1.54 5.54 -51.93 -0.29 1.25 16 25 H 0.07 1.08 5.52 -51.93 -0.29 0.79 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 1.03 5.52 -51.93 -0.29 0.74 16 29 H 0.09 1.46 5.48 -51.92 -0.28 1.18 16 30 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.41 1.56 9.10 45.56 0.41 1.97 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.41 6.84 8.34 -40.82 -0.34 6.50 16 36 H 0.06 1.29 4.98 -51.93 -0.26 1.03 16 37 H 0.05 0.99 8.07 -51.93 -0.42 0.57 16 38 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 LS Contribution 331.03 15.07 4.99 4.99 Total: -1.00 -31.86 331.03 -5.72 -37.58 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -5.61 Total: 10.46 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -0.61 Total: -9.36 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.44 Total: -38.23 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.69 Total: -22.27 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.24 Total: 16.83 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.86 -5.72 -37.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362336868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.131 kcal (2) G-P(sol) polarization free energy of solvation -31.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds