Wall clock time and date at job start Tue Mar 31 2020 05:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48504 * 109.47092 * 269.99391 * 3 2 1 5 5 H 1.48498 * 109.47340 * 29.99642 * 3 2 1 6 6 H 1.48501 * 109.47391 * 149.99714 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46626 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.46691 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99880 * 179.97438 * 12 11 10 14 14 O 1.21284 * 119.99750 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00141 * 180.02562 * 13 12 11 16 16 H 1.09004 * 109.47043 * 300.00223 * 15 13 12 17 17 C 1.52997 * 109.47055 * 60.00303 * 15 13 12 18 18 C 1.52997 * 109.47232 * 60.00233 * 17 15 13 19 19 C 1.52993 * 109.47024 * 60.00042 * 18 17 15 20 20 C 1.53002 * 109.47392 * 299.99929 * 19 18 17 21 21 H 1.09002 * 109.47097 * 300.00241 * 20 19 18 22 22 C 1.50699 * 109.47389 * 180.02562 * 20 19 18 23 23 O 1.20818 * 119.99860 * 240.00222 * 22 20 19 24 24 O 1.34233 * 119.99906 * 59.99851 * 22 20 19 25 25 C 1.52997 * 109.46978 * 60.00043 * 20 19 18 26 26 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 28 28 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 29 29 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 30 30 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 31 31 H 1.08993 * 109.47839 * 299.99931 * 11 10 9 32 32 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 33 33 H 0.96999 * 120.00076 * 0.02562 * 12 11 10 34 34 H 1.09002 * 109.47153 * 180.02562 * 17 15 13 35 35 H 1.08998 * 109.47076 * 299.99579 * 17 15 13 36 36 H 1.09002 * 109.46777 * 299.99578 * 18 17 15 37 37 H 1.09000 * 109.47140 * 180.02562 * 18 17 15 38 38 H 1.09004 * 109.46862 * 180.02562 * 19 18 17 39 39 H 1.09002 * 109.47722 * 60.00114 * 19 18 17 40 40 H 0.96701 * 116.99822 * 179.97438 * 24 22 20 41 41 H 1.09000 * 109.47140 * 180.02562 * 25 20 19 42 42 H 1.09002 * 109.47045 * 60.00167 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 0.0012 12 7 2.4325 -6.1006 0.0006 13 6 1.9833 -7.3713 0.0015 14 8 0.7909 -7.5929 0.0024 15 6 2.9626 -8.5167 0.0014 16 1 3.5887 -8.4593 -0.8890 17 6 3.8429 -8.4350 1.2501 18 6 2.9641 -8.5155 2.4999 19 6 2.1992 -9.8405 2.5010 20 6 1.3188 -9.9222 1.2523 21 1 0.6104 -9.0938 1.2523 22 6 0.5649 -11.2271 1.2537 23 8 0.7152 -12.0125 0.3480 24 8 -0.2735 -11.5168 2.2612 25 6 2.1976 -9.8417 0.0025 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5568 0.8903 29 1 2.8721 -3.6042 -0.8894 30 1 2.8721 -3.6043 0.8905 31 1 0.8541 -5.0446 0.8913 32 1 0.8535 -5.0451 -0.8886 33 1 3.3862 -5.9233 0.0002 34 1 4.5516 -9.2632 1.2498 35 1 4.3880 -7.4911 1.2493 36 1 2.2558 -7.6870 2.4999 37 1 3.5913 -8.4569 3.3895 38 1 1.5728 -9.8977 3.3912 39 1 2.9075 -10.6691 2.5009 40 1 -0.7350 -12.3654 2.2180 41 1 1.5704 -9.8995 -0.8871 42 1 2.9060 -10.6702 0.0025 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380674116.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:19 Heat of formation + Delta-G solvation = -169.265707 kcal Electronic energy + Delta-G solvation = -22435.911483 eV Core-core repulsion = 18993.185699 eV Total energy + Delta-G solvation = -3442.725784 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.07625 -39.89524 -37.33740 -36.24581 -35.42107 -33.43281 -32.05498 -31.11101 -30.83313 -26.85410 -24.76009 -24.07427 -22.64158 -21.72027 -20.80333 -20.64327 -19.20772 -18.16408 -17.14158 -16.55303 -16.36757 -16.02525 -15.47619 -15.35569 -15.06281 -14.47897 -14.38536 -13.99975 -13.69790 -13.53191 -12.93977 -12.67337 -12.43682 -12.33631 -12.19720 -11.86238 -11.78137 -11.69313 -11.37829 -11.19795 -10.95378 -10.88181 -10.75383 -10.60749 -10.48767 -10.35450 -9.89556 -9.74187 -9.32620 -9.12719 -8.79424 -8.39396 -6.03992 -4.07272 2.07611 2.71813 2.89107 3.29138 3.33877 3.36091 3.39047 4.34249 4.41322 4.42139 4.49481 4.76100 4.82891 4.94591 5.07934 5.16472 5.21640 5.31830 5.32320 5.47412 5.60316 5.67640 5.72501 5.74311 5.76479 5.89564 5.92239 6.01869 6.09548 6.13379 6.33397 6.48096 6.56627 6.80169 6.97536 7.60887 7.67172 7.73299 7.74289 7.94588 8.33597 8.37431 8.99457 9.57114 11.07294 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.033828 B = 0.002814 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.507145 B = 9948.777289 C =10200.705803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.115 3.885 12 N -0.723 5.723 13 C 0.513 3.487 14 O -0.543 6.543 15 C -0.110 4.110 16 H 0.103 0.897 17 C -0.113 4.113 18 C -0.123 4.123 19 C -0.108 4.108 20 C -0.094 4.094 21 H 0.140 0.860 22 C 0.487 3.513 23 O -0.522 6.522 24 O -0.516 6.516 25 C -0.080 4.080 26 H 0.261 0.739 27 H 0.018 0.982 28 H 0.019 0.981 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.398 0.602 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.406 0.594 41 H 0.078 0.922 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.272 -21.831 4.522 23.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.374 5.374 13 C 0.299 3.701 14 O -0.422 6.422 15 C -0.132 4.132 16 H 0.121 0.879 17 C -0.151 4.151 18 C -0.160 4.160 19 C -0.146 4.146 20 C -0.112 4.112 21 H 0.157 0.843 22 C 0.330 3.670 23 O -0.410 6.410 24 O -0.327 6.327 25 C -0.118 4.118 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.232 0.768 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.264 0.736 41 H 0.097 0.903 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.498 -21.681 4.297 23.038 hybrid contribution 0.510 0.521 -0.130 0.741 sum 7.008 -21.160 4.166 22.676 Atomic orbital electron populations 1.69965 1.06063 1.26717 1.50520 1.25032 0.94859 0.99317 0.95260 0.86582 0.79795 0.83430 0.78108 1.20655 1.21195 1.19891 1.21200 0.92979 0.90951 1.50985 0.92659 1.19028 0.93845 0.90876 0.97631 1.21883 0.99749 0.93388 1.00837 1.21651 0.91908 0.85187 1.01974 1.46243 1.10794 1.05958 1.74369 1.20538 0.89540 0.84089 0.75914 1.90613 1.17024 1.84517 1.50005 1.21418 0.97068 0.93838 1.00825 0.87870 1.21585 0.97387 1.03078 0.93036 1.21578 0.98932 0.97514 0.98009 1.21517 0.98223 0.98453 0.96392 1.21420 0.98484 0.93712 0.97630 0.84311 1.23668 0.76500 0.88614 0.78238 1.90690 1.63537 1.50283 1.36495 1.84569 1.55665 1.44045 1.48466 1.21183 0.98000 0.95449 0.97194 0.92906 0.96319 0.96288 0.92761 0.92746 0.91766 0.91793 0.76807 0.90552 0.90887 0.91189 0.90851 0.90544 0.91595 0.73562 0.90288 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 8 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 11 C 0.12 1.93 5.67 -4.04 -0.02 1.91 16 12 N -0.72 -9.39 5.45 -60.29 -0.33 -9.72 16 13 C 0.51 6.73 5.64 -10.99 -0.06 6.67 16 14 O -0.54 -9.12 13.66 5.55 0.08 -9.04 16 15 C -0.11 -1.02 3.01 -91.77 -0.28 -1.30 16 16 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 17 C -0.11 -0.83 5.35 -26.73 -0.14 -0.98 16 18 C -0.12 -1.03 5.70 -26.74 -0.15 -1.18 16 19 C -0.11 -0.93 5.14 -26.73 -0.14 -1.07 16 20 C -0.09 -1.02 2.33 -91.77 -0.21 -1.24 16 21 H 0.14 1.85 5.51 -51.93 -0.29 1.56 16 22 C 0.49 5.59 7.63 36.01 0.27 5.87 16 23 O -0.52 -7.28 16.74 -18.74 -0.31 -7.59 16 24 O -0.52 -4.70 13.33 -39.27 -0.52 -5.22 16 25 C -0.08 -0.84 3.66 -26.73 -0.10 -0.94 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.40 4.10 7.89 -40.82 -0.32 3.78 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.48 7.56 -51.93 -0.39 0.09 16 36 H 0.07 0.73 7.22 -51.93 -0.37 0.36 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.41 1.92 9.10 45.56 0.41 2.33 16 41 H 0.08 0.96 8.06 -51.93 -0.42 0.55 16 42 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 LS Contribution 341.29 15.07 5.14 5.14 Total: -1.00 -33.77 341.29 -7.74 -41.51 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.99 Total: 1.98 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -1.52 Total: -7.43 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.41 Total: -35.60 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.76 Total: -21.85 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.77 -7.74 -41.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380674116.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.757 kcal (2) G-P(sol) polarization free energy of solvation -33.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds