Wall clock time and date at job start Tue Mar 31 2020 05:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1 9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1 10 10 O 1.42894 * 109.47263 * 179.72549 * 9 7 2 11 11 C 1.42906 * 114.00137 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47211 * 180.02562 * 11 10 9 13 13 N 1.46893 * 109.47209 * 64.99810 * 12 11 10 14 14 C 1.49690 * 111.00014 * 69.87751 * 13 12 11 15 15 C 1.49725 * 104.64953 * 115.31359 * 14 13 12 16 16 H 1.09002 * 108.53585 * 282.60263 * 15 14 13 17 17 C 1.49717 * 127.98835 * 149.17745 * 15 14 13 18 18 C 1.56001 * 103.99671 * 210.27722 * 17 15 14 19 19 C 1.56330 * 105.77129 * 6.93423 * 18 17 15 20 20 C 1.51575 * 101.82338 * 25.42777 * 19 18 17 21 21 H 1.09007 * 111.11311 * 71.48922 * 20 19 18 22 22 C 1.50037 * 110.99686 * 189.65204 * 13 12 11 23 23 H 1.09000 * 110.80887 * 330.90167 * 22 13 12 24 24 C 1.50703 * 110.80545 * 94.42033 * 22 13 12 25 25 O 1.20826 * 120.00451 * 18.54011 * 24 22 13 26 26 O 1.34236 * 119.99693 * 198.54741 * 24 22 13 27 27 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 29 29 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 30 30 H 1.09001 * 109.46459 * 300.00527 * 11 10 9 31 31 H 1.08994 * 109.46942 * 59.99884 * 11 10 9 32 32 H 1.08997 * 109.47007 * 185.00358 * 12 11 10 33 33 H 1.09002 * 109.46606 * 304.99253 * 12 11 10 34 34 H 1.09001 * 110.40104 * 234.10274 * 14 13 12 35 35 H 1.08995 * 110.40528 * 356.51956 * 14 13 12 36 36 H 1.09006 * 110.51934 * 328.90091 * 17 15 14 37 37 H 1.09002 * 110.52723 * 91.50489 * 17 15 14 38 38 H 1.09001 * 110.18849 * 126.00917 * 18 17 15 39 39 H 1.08993 * 110.18944 * 247.85930 * 18 17 15 40 40 H 1.08996 * 110.96085 * 143.56116 * 19 18 17 41 41 H 1.09006 * 110.96099 * 267.25803 * 19 18 17 42 42 H 0.96695 * 117.00060 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0054 9 6 3.5117 -1.1939 0.0011 10 8 3.9880 -2.5411 0.0081 11 6 5.4126 -2.6539 0.0086 12 6 5.8071 -4.1322 0.0156 13 7 5.3679 -4.7621 -1.2366 14 6 6.1741 -4.2683 -2.3972 15 6 6.9124 -5.4756 -2.8863 16 1 7.7508 -5.6643 -2.2158 17 6 7.3423 -5.7885 -4.2859 18 6 7.3116 -7.3469 -4.3505 19 6 6.6808 -7.8158 -2.9993 20 6 5.8504 -6.6094 -2.6089 21 1 4.9774 -6.5083 -3.2538 22 6 5.5252 -6.2528 -1.1725 23 1 6.3460 -6.5275 -0.5100 24 6 4.2403 -6.9084 -0.7359 25 8 3.1968 -6.3045 -0.8147 26 8 4.2553 -8.1632 -0.2593 27 1 -0.4850 0.8400 -0.0004 28 1 3.8752 -0.6845 -0.8913 29 1 3.8746 -0.6756 0.8886 30 1 5.8152 -2.1749 -0.8839 31 1 5.8154 -2.1658 0.8960 32 1 6.8899 -4.2188 0.1056 33 1 5.3314 -4.6311 0.8599 34 1 5.5190 -3.8815 -3.1778 35 1 6.8755 -3.4996 -2.0730 36 1 6.6425 -5.3623 -5.0048 37 1 8.3504 -5.4161 -4.4684 38 1 6.6961 -7.6766 -5.1875 39 1 8.3236 -7.7392 -4.4495 40 1 6.0498 -8.6922 -3.1469 41 1 7.4534 -8.0149 -2.2565 42 1 3.4066 -8.5412 0.0086 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385186362.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:21 Heat of formation + Delta-G solvation = -114.093613 kcal Electronic energy + Delta-G solvation = -23146.305949 eV Core-core repulsion = 19705.972606 eV Total energy + Delta-G solvation = -3440.333342 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.12553 -39.36652 -37.13716 -35.97990 -35.41361 -32.57820 -31.22512 -30.64647 -28.06751 -27.17665 -26.46355 -23.77328 -22.16033 -21.71105 -20.70772 -20.26161 -19.56974 -18.03413 -16.85712 -16.69139 -16.27897 -15.84427 -15.56738 -15.14729 -14.58849 -14.44478 -14.37542 -14.02827 -13.62283 -13.32142 -13.01783 -12.66084 -12.65737 -12.29434 -12.07973 -11.74168 -11.56269 -11.49109 -11.32242 -11.07196 -10.95315 -10.86855 -10.72524 -10.65492 -10.59594 -10.37111 -10.02079 -9.77621 -9.05346 -8.72856 -8.34660 -8.30365 -6.01011 -3.98803 2.40886 2.87007 3.30355 3.36585 3.38364 3.64497 3.93973 4.37678 4.43542 4.53591 4.67076 4.73913 4.85706 4.95078 5.02511 5.23694 5.27007 5.29642 5.32749 5.38450 5.42933 5.45568 5.52241 5.64797 5.72826 5.79413 5.80873 5.84381 5.92945 5.95860 6.07615 6.13147 6.20432 6.64921 6.68739 6.72382 6.98531 7.10330 7.70942 8.13558 8.16610 8.80192 9.14951 9.58762 11.12446 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021409 B = 0.004138 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.523513 B = 6765.347258 C = 7401.959154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.512 4.512 8 H 0.084 0.916 9 C 0.168 3.832 10 O -0.360 6.360 11 C 0.065 3.935 12 C 0.053 3.947 13 N -0.488 5.488 14 C 0.061 3.939 15 C -0.128 4.128 16 H 0.067 0.933 17 C -0.102 4.102 18 C -0.121 4.121 19 C -0.106 4.106 20 C -0.107 4.107 21 H 0.097 0.903 22 C 0.095 3.905 23 H 0.087 0.913 24 C 0.474 3.526 25 O -0.467 6.467 26 O -0.527 6.527 27 H 0.265 0.735 28 H -0.004 1.004 29 H -0.001 1.001 30 H 0.039 0.961 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.335 -16.128 -5.950 25.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.550 4.550 8 H 0.102 0.898 9 C 0.093 3.907 10 O -0.278 6.278 11 C -0.013 4.013 12 C -0.075 4.075 13 N -0.213 5.213 14 C -0.066 4.066 15 C -0.147 4.147 16 H 0.085 0.915 17 C -0.140 4.140 18 C -0.159 4.159 19 C -0.144 4.144 20 C -0.127 4.127 21 H 0.115 0.885 22 C -0.014 4.014 23 H 0.105 0.895 24 C 0.312 3.688 25 O -0.349 6.349 26 O -0.340 6.340 27 H 0.075 0.925 28 H 0.014 0.986 29 H 0.017 0.983 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 18.564 -15.650 -6.125 25.041 hybrid contribution 0.778 0.799 0.457 1.205 sum 19.341 -14.850 -5.668 25.035 Atomic orbital electron populations 1.69887 1.06034 1.26855 1.50884 1.24767 0.94775 0.98606 0.94901 0.86864 0.80314 0.83943 0.78664 1.20009 1.20887 1.19213 1.20930 0.88361 0.95350 1.50360 0.89828 1.20577 0.96254 0.79969 0.93940 1.88080 1.16385 1.28561 1.94811 1.22284 0.86198 0.93881 0.98954 1.22357 0.96911 0.95952 0.92264 1.64656 1.53369 0.99870 1.03439 1.22075 0.95249 0.95436 0.93796 1.22103 0.97937 0.96202 0.98499 0.91493 1.21331 1.01515 0.95703 0.95460 1.22952 1.00852 0.94819 0.97274 1.21919 0.98532 0.96640 0.97274 1.22466 0.99457 0.96976 0.93757 0.88459 1.21363 0.92114 0.90418 0.97509 0.89488 1.23081 0.91735 0.79247 0.74760 1.90852 1.33032 1.63041 1.47982 1.84475 1.41912 1.31042 1.76537 0.92516 0.98628 0.98347 0.94328 0.94023 0.93637 0.90112 0.89401 0.91362 0.91037 0.91378 0.91327 0.91510 0.91060 0.91069 0.73354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.82 13.96 55.43 0.77 -28.05 16 2 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 3 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.46 6.53 56.52 0.37 -6.09 16 7 C -0.51 -16.10 9.99 -34.44 -0.34 -16.44 16 8 H 0.08 2.92 8.06 -52.49 -0.42 2.50 16 9 C 0.17 4.51 4.76 36.01 0.17 4.68 16 10 O -0.36 -9.00 10.27 -35.23 -0.36 -9.37 16 11 C 0.07 1.18 6.05 37.16 0.22 1.41 16 12 C 0.05 0.80 4.99 -3.83 -0.02 0.78 16 13 N -0.49 -7.51 4.53 -225.86 -1.02 -8.53 16 14 C 0.06 0.76 6.13 -3.89 -0.02 0.74 16 15 C -0.13 -1.22 2.62 -91.23 -0.24 -1.46 16 16 H 0.07 0.59 7.94 -51.93 -0.41 0.18 16 17 C -0.10 -0.79 6.72 -26.75 -0.18 -0.97 16 18 C -0.12 -0.84 6.95 -23.34 -0.16 -1.00 16 19 C -0.11 -0.83 6.59 -25.66 -0.17 -1.00 16 20 C -0.11 -1.13 2.47 -89.45 -0.22 -1.35 16 21 H 0.10 1.20 8.13 -51.92 -0.42 0.78 16 22 C 0.10 1.21 2.61 -67.85 -0.18 1.03 16 23 H 0.09 0.93 7.88 -51.93 -0.41 0.52 16 24 C 0.47 7.02 7.67 36.01 0.28 7.29 16 25 O -0.47 -9.41 17.38 -18.75 -0.33 -9.74 16 26 O -0.53 -5.79 13.42 -39.27 -0.53 -6.32 16 27 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 28 H 0.00 -0.10 7.58 -51.93 -0.39 -0.50 16 29 H 0.00 -0.03 7.18 -51.93 -0.37 -0.40 16 30 H 0.04 0.66 6.89 -51.93 -0.36 0.30 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.52 8.06 -51.93 -0.42 0.10 16 33 H 0.08 1.28 8.09 -51.93 -0.42 0.86 16 34 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.07 0.77 6.82 -51.93 -0.35 0.42 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.41 2.99 9.10 45.56 0.41 3.40 16 LS Contribution 339.98 15.07 5.12 5.12 Total: -1.00 -37.46 339.98 -8.09 -45.55 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -6.12 Total: -1.91 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -0.96 Total: -4.23 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: -0.25 Total: -36.58 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -1.21 Total: -25.42 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -37.46 -8.09 -45.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385186362.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.541 kcal (2) G-P(sol) polarization free energy of solvation -37.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds