Wall clock time and date at job start Tue Mar 31 2020 05:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00047 * 2 1 4 4 H 1.48499 * 109.47233 * 239.99987 * 3 2 1 5 5 H 1.48497 * 109.46773 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46804 * 119.99809 * 3 2 1 7 7 C 1.37876 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00134 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99998 * 359.97438 * 7 2 1 10 10 O 1.42905 * 109.47443 * 179.97438 * 9 7 2 11 11 C 1.42895 * 114.00351 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47185 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.46813 * 64.49988 * 12 11 10 14 14 C 1.46956 * 111.00338 * 65.67094 * 13 12 11 15 15 C 1.53798 * 108.16327 * 124.30762 * 14 13 12 16 16 H 1.09006 * 112.06379 * 253.10342 * 15 14 13 17 17 C 1.54006 * 108.65862 * 128.78023 * 15 14 13 18 18 C 1.56601 * 105.61093 * 249.09475 * 17 15 14 19 19 C 1.54912 * 104.60397 * 22.65049 * 18 17 15 20 20 C 1.54571 * 102.68167 * 322.01791 * 19 18 17 21 21 H 1.09002 * 113.07687 * 276.00118 * 20 19 18 22 22 C 1.47104 * 110.99698 * 187.39790 * 13 12 11 23 23 H 1.09005 * 109.97609 * 338.97596 * 22 13 12 24 24 C 1.50697 * 109.97727 * 100.21945 * 22 13 12 25 25 O 1.20830 * 119.99997 * 18.53869 * 24 22 13 26 26 O 1.34232 * 120.00026 * 198.54474 * 24 22 13 27 27 H 0.96996 * 120.00099 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46958 * 60.00121 * 9 7 2 29 29 H 1.08998 * 109.47210 * 299.99905 * 9 7 2 30 30 H 1.09007 * 109.46758 * 60.00007 * 11 10 9 31 31 H 1.08996 * 109.46917 * 300.00282 * 11 10 9 32 32 H 1.08995 * 109.47088 * 304.49570 * 12 11 10 33 33 H 1.09006 * 109.47125 * 184.49266 * 12 11 10 34 34 H 1.09008 * 109.73539 * 4.62041 * 14 13 12 35 35 H 1.08996 * 109.73888 * 244.00003 * 14 13 12 36 36 H 1.08995 * 109.99620 * 7.22912 * 17 15 14 37 37 H 1.09003 * 109.99295 * 128.55481 * 17 15 14 38 38 H 1.08996 * 110.10546 * 263.93630 * 18 17 15 39 39 H 1.09002 * 110.61199 * 141.61436 * 18 17 15 40 40 H 1.08998 * 110.76685 * 203.72016 * 19 18 17 41 41 H 1.08995 * 110.76977 * 80.32175 * 19 18 17 42 42 H 0.96696 * 116.99928 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 8 2.1797 -3.5853 0.0015 11 6 1.5652 -4.8754 0.0019 12 6 2.6482 -5.9562 0.0010 13 7 3.4170 -5.8800 1.2505 14 6 2.5763 -6.2175 2.4076 15 6 3.2501 -7.3712 3.1694 16 1 2.7254 -8.3163 3.0290 17 6 3.3553 -6.9847 4.6565 18 6 4.8825 -6.7718 4.9296 19 6 5.4899 -6.4695 3.5370 20 6 4.6963 -7.4161 2.6078 21 1 5.1055 -8.4259 2.5765 22 6 4.5761 -6.7850 1.2122 23 1 4.4171 -7.5623 0.4646 24 6 5.8258 -6.0077 0.8885 25 8 5.8457 -4.8082 1.0333 26 8 6.9169 -6.6477 0.4393 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5575 -0.8880 29 1 0.6248 -2.5563 0.8919 30 1 0.9447 -4.9826 -0.8878 31 1 0.9455 -4.9823 0.8922 32 1 3.3158 -5.8008 -0.8465 33 1 2.1816 -6.9381 -0.0792 34 1 1.5887 -6.5286 2.0668 35 1 2.4833 -5.3499 3.0607 36 1 2.8188 -6.0534 4.8383 37 1 2.9437 -7.7798 5.2783 38 1 5.3185 -7.6794 5.3470 39 1 5.0380 -5.9300 5.6044 40 1 6.5527 -6.7108 3.5182 41 1 5.3241 -5.4282 3.2608 42 1 7.6943 -6.1066 0.2449 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385186365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:25 Heat of formation + Delta-G solvation = -134.438184 kcal Electronic energy + Delta-G solvation = -23412.857309 eV Core-core repulsion = 19971.641760 eV Total energy + Delta-G solvation = -3441.215549 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.99981 -39.08664 -36.88188 -35.86502 -35.17724 -32.62730 -31.31706 -30.33323 -27.74798 -26.69121 -26.37268 -23.82272 -22.23801 -21.77706 -20.86991 -19.94915 -19.62319 -17.73318 -16.81383 -16.43400 -16.21213 -15.79035 -15.51828 -15.03950 -14.49655 -14.34451 -13.96013 -13.84536 -13.76532 -13.23341 -12.87379 -12.71721 -12.52944 -12.00254 -11.78242 -11.50707 -11.36067 -11.22349 -11.16716 -10.93495 -10.89081 -10.78878 -10.74694 -10.64914 -10.42056 -10.34675 -10.10596 -9.90389 -8.99292 -8.69676 -8.16958 -8.03690 -6.01077 -4.01113 2.45042 2.94285 3.40209 3.41433 3.47185 4.02724 4.15529 4.32047 4.44250 4.51882 4.87939 4.92902 5.07590 5.12505 5.18681 5.24159 5.30355 5.35394 5.37315 5.47828 5.51258 5.61055 5.65247 5.77172 5.81575 5.90721 5.97704 6.01901 6.08557 6.12328 6.23803 6.29473 6.33797 6.66750 7.00581 7.13722 7.21098 7.53349 7.92040 8.16088 8.27752 8.72830 9.14304 9.63334 11.10695 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.018102 B = 0.004371 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.436096 B = 6404.084209 C = 6634.609611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.508 4.508 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.375 6.375 11 C 0.068 3.932 12 C 0.058 3.942 13 N -0.497 5.497 14 C 0.055 3.945 15 C -0.110 4.110 16 H 0.084 0.916 17 C -0.116 4.116 18 C -0.119 4.119 19 C -0.130 4.130 20 C -0.084 4.084 21 H 0.099 0.901 22 C 0.092 3.908 23 H 0.083 0.917 24 C 0.476 3.524 25 O -0.470 6.470 26 O -0.529 6.529 27 H 0.263 0.737 28 H 0.001 0.999 29 H 0.002 0.998 30 H 0.040 0.960 31 H 0.037 0.963 32 H 0.078 0.922 33 H 0.044 0.956 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.833 -20.174 6.397 22.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.546 4.546 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.294 6.294 11 C -0.010 4.010 12 C -0.070 4.070 13 N -0.221 5.221 14 C -0.072 4.072 15 C -0.129 4.129 16 H 0.103 0.897 17 C -0.154 4.154 18 C -0.157 4.157 19 C -0.167 4.167 20 C -0.104 4.104 21 H 0.117 0.883 22 C -0.018 4.018 23 H 0.101 0.899 24 C 0.314 3.686 25 O -0.352 6.352 26 O -0.342 6.342 27 H 0.072 0.928 28 H 0.019 0.981 29 H 0.020 0.980 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.109 0.891 42 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 8.678 -19.365 6.561 22.212 hybrid contribution 0.207 0.446 -0.383 0.623 sum 8.885 -18.919 6.178 21.796 Atomic orbital electron populations 1.69959 1.06068 1.27051 1.51146 1.24929 0.94939 0.99324 0.95335 0.86413 0.79297 0.81993 0.78882 1.20076 1.21258 1.20016 1.21050 0.94145 0.89349 1.50041 0.91529 1.20160 0.88819 0.83998 0.94967 1.88011 1.34352 1.12123 1.94963 1.22228 0.93462 0.86457 0.98901 1.22392 0.96213 0.96501 0.91859 1.62275 1.06444 1.50279 1.03125 1.22942 0.95057 0.97163 0.92052 1.22827 0.94992 0.98819 0.96260 0.89739 1.22679 0.96677 1.01648 0.94380 1.22701 0.94933 1.01135 0.96893 1.22681 0.98451 1.00984 0.94596 1.22693 0.96712 0.99221 0.91728 0.88283 1.21525 0.88781 0.92475 0.99025 0.89924 1.23217 0.84236 0.87213 0.73918 1.90809 1.82515 1.15500 1.46407 1.84497 1.24305 1.46542 1.78807 0.92779 0.98121 0.97976 0.94201 0.94505 0.90318 0.93780 0.92315 0.89467 0.90863 0.91632 0.91953 0.91468 0.91692 0.89093 0.73566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.87 13.29 55.43 0.74 -27.13 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.91 22.88 29.54 -169.99 -5.02 17.86 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.51 -15.75 9.43 -34.44 -0.32 -16.08 16 8 H 0.07 2.10 7.81 -52.48 -0.41 1.69 16 9 C 0.20 5.61 5.69 36.00 0.20 5.81 16 10 O -0.38 -9.65 10.27 -35.23 -0.36 -10.01 16 11 C 0.07 1.30 5.98 37.16 0.22 1.52 16 12 C 0.06 0.89 4.85 -3.82 -0.02 0.87 16 13 N -0.50 -7.75 4.29 -226.91 -0.97 -8.72 16 14 C 0.05 0.73 5.59 -3.38 -0.02 0.71 16 15 C -0.11 -1.09 3.86 -88.51 -0.34 -1.44 16 16 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 17 C -0.12 -1.09 6.57 -24.27 -0.16 -1.25 16 18 C -0.12 -1.13 6.88 -23.78 -0.16 -1.29 16 19 C -0.13 -1.47 5.09 -24.90 -0.13 -1.60 16 20 C -0.08 -0.87 3.69 -88.29 -0.33 -1.20 16 21 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 22 C 0.09 1.18 2.81 -68.42 -0.19 0.98 16 23 H 0.08 0.90 7.70 -51.93 -0.40 0.50 16 24 C 0.48 6.89 6.12 36.00 0.22 7.11 16 25 O -0.47 -9.03 16.40 -18.75 -0.31 -9.34 16 26 O -0.53 -5.74 13.42 -39.26 -0.53 -6.27 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 29 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.04 0.68 6.78 -51.93 -0.35 0.33 16 32 H 0.08 1.27 8.11 -51.93 -0.42 0.85 16 33 H 0.04 0.53 8.07 -51.93 -0.42 0.11 16 34 H 0.06 0.72 6.73 -51.92 -0.35 0.37 16 35 H 0.09 1.33 7.01 -51.93 -0.36 0.97 16 36 H 0.07 0.76 7.02 -51.93 -0.36 0.40 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.37 6.70 -51.93 -0.35 1.02 16 42 H 0.41 2.90 9.10 45.56 0.41 3.31 16 LS Contribution 337.17 15.07 5.08 5.08 Total: -1.00 -36.18 337.17 -8.45 -44.62 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -5.95 Total: -1.81 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -1.12 Total: -4.28 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: -0.24 Total: -35.85 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -1.20 Total: -25.62 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -36.18 -8.45 -44.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385186365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.815 kcal (2) G-P(sol) polarization free energy of solvation -36.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds