Wall clock time and date at job start Tue Mar 31 2020 05:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 120.00140 * 2 1 4 4 H 1.48501 * 109.47239 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46768 * 300.00078 * 3 2 1 6 6 H 1.48505 * 109.47123 * 59.99547 * 3 2 1 7 7 C 1.37877 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99892 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00217 * 0.02562 * 7 2 1 10 10 O 1.42896 * 109.47254 * 179.97438 * 9 7 2 11 11 C 1.42907 * 113.99784 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46669 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47685 * 65.00027 * 12 11 10 14 14 C 1.49411 * 110.74655 * 306.91292 * 13 12 11 15 15 C 1.54706 * 103.03791 * 199.86808 * 14 13 12 16 16 H 1.09002 * 112.34572 * 276.10624 * 15 14 13 17 17 C 1.53599 * 109.61353 * 150.56738 * 15 14 13 18 18 C 1.54171 * 106.74625 * 247.88930 * 17 15 14 19 19 C 1.54761 * 104.37421 * 23.98499 * 18 17 15 20 20 C 1.54737 * 103.18058 * 322.57024 * 19 18 17 21 21 H 1.09003 * 112.57599 * 274.05725 * 20 19 18 22 22 C 1.47856 * 111.00162 * 190.00109 * 13 12 11 23 23 H 1.09004 * 110.04433 * 27.06483 * 22 13 12 24 24 C 1.50698 * 109.89649 * 265.92158 * 22 13 12 25 25 O 1.20830 * 120.00124 * 342.29906 * 24 22 13 26 26 O 1.34225 * 120.00176 * 162.29843 * 24 22 13 27 27 H 0.97000 * 120.00013 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46812 * 59.99311 * 9 7 2 29 29 H 1.09004 * 109.46713 * 299.99863 * 9 7 2 30 30 H 1.08992 * 109.47296 * 59.99821 * 11 10 9 31 31 H 1.08998 * 109.46904 * 299.99690 * 11 10 9 32 32 H 1.09003 * 109.47248 * 304.99072 * 12 11 10 33 33 H 1.09004 * 109.47126 * 185.00173 * 12 11 10 34 34 H 1.08996 * 110.17857 * 81.81486 * 14 13 12 35 35 H 1.09003 * 111.47816 * 318.52588 * 14 13 12 36 36 H 1.09004 * 110.00451 * 6.35797 * 17 15 14 37 37 H 1.09000 * 110.00512 * 127.72240 * 17 15 14 38 38 H 1.08995 * 109.97711 * 265.44696 * 18 17 15 39 39 H 1.08999 * 110.91649 * 142.98320 * 18 17 15 40 40 H 1.09001 * 110.67462 * 204.14884 * 19 18 17 41 41 H 1.08998 * 110.82639 * 81.06115 * 19 18 17 42 42 H 0.96706 * 117.00159 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6480 -5.9561 0.0006 13 7 3.4072 -5.8879 1.2564 14 6 3.9196 -4.5041 1.4906 15 6 5.0682 -4.7240 2.5034 16 1 4.7097 -4.7771 3.5314 17 6 6.1367 -3.6367 2.3152 18 6 7.3935 -4.3395 1.7646 19 6 6.8512 -5.6206 1.0863 20 6 5.7039 -6.0594 2.0273 21 1 6.0541 -6.6770 2.8544 22 6 4.6068 -6.7503 1.1979 23 1 4.9370 -6.8614 0.1650 24 6 4.2951 -8.1029 1.7848 25 8 3.3244 -8.2465 2.4898 26 8 5.0960 -9.1481 1.5245 27 1 -0.4850 0.8400 -0.0004 28 1 0.6246 -2.5570 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 0.9452 -4.9822 -0.8902 31 1 0.9446 -4.9827 0.8897 32 1 3.3221 -5.7956 -0.8408 33 1 2.1821 -6.9375 -0.0894 34 1 3.1375 -3.8823 1.9261 35 1 4.2987 -4.0579 0.5711 36 1 5.7923 -2.8966 1.5928 37 1 6.3510 -3.1555 3.2695 38 1 8.0653 -4.5965 2.5835 39 1 7.9043 -3.7094 1.0366 40 1 7.6244 -6.3874 1.0385 41 1 6.4685 -5.3992 0.0901 42 1 4.8551 -9.9957 1.9230 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385186370.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:28 Heat of formation + Delta-G solvation = -138.869186 kcal Electronic energy + Delta-G solvation = -23536.080447 eV Core-core repulsion = 20094.672755 eV Total energy + Delta-G solvation = -3441.407691 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.82257 -39.22747 -37.07416 -36.08505 -35.03073 -32.74344 -31.04803 -30.35338 -27.72254 -26.65237 -26.42283 -23.41092 -22.30129 -21.79130 -20.70045 -20.00100 -19.41140 -18.02162 -17.11014 -16.37848 -15.92649 -15.68379 -15.56880 -15.16284 -14.67560 -14.37067 -14.09583 -13.81003 -13.44868 -13.09462 -13.01522 -12.65336 -12.40646 -11.89640 -11.65013 -11.54174 -11.34477 -11.27289 -11.13216 -10.94893 -10.78617 -10.76107 -10.68473 -10.54942 -10.45270 -10.30803 -10.18380 -9.94051 -9.09687 -8.82261 -8.26351 -8.17068 -6.12518 -4.14377 2.25408 2.87713 3.27206 3.34106 3.39115 4.12675 4.31307 4.34566 4.52849 4.61206 4.86700 5.10859 5.14687 5.17779 5.24397 5.30858 5.44626 5.46861 5.56752 5.60491 5.66600 5.70523 5.77049 5.89613 6.01200 6.06638 6.11606 6.16640 6.21627 6.29615 6.39794 6.46877 6.52780 6.69493 6.99247 7.10992 7.18195 7.42671 7.76637 7.97021 8.13250 8.53540 8.98418 9.50643 10.99036 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.019931 B = 0.004784 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.526434 B = 5851.384013 C = 6919.118621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.512 4.512 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.393 6.393 11 C 0.062 3.938 12 C 0.050 3.950 13 N -0.496 5.496 14 C 0.064 3.936 15 C -0.097 4.097 16 H 0.086 0.914 17 C -0.120 4.120 18 C -0.121 4.121 19 C -0.117 4.117 20 C -0.084 4.084 21 H 0.088 0.912 22 C 0.079 3.921 23 H 0.085 0.915 24 C 0.479 3.521 25 O -0.491 6.491 26 O -0.524 6.524 27 H 0.263 0.737 28 H 0.003 0.997 29 H 0.006 0.994 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.140 -14.396 2.487 19.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.550 4.550 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.313 6.313 11 C -0.015 4.015 12 C -0.078 4.078 13 N -0.221 5.221 14 C -0.062 4.062 15 C -0.117 4.117 16 H 0.105 0.895 17 C -0.158 4.158 18 C -0.159 4.159 19 C -0.154 4.154 20 C -0.103 4.103 21 H 0.106 0.894 22 C -0.031 4.031 23 H 0.103 0.897 24 C 0.319 3.681 25 O -0.375 6.375 26 O -0.336 6.336 27 H 0.073 0.927 28 H 0.021 0.979 29 H 0.024 0.976 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.121 0.879 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 12.623 -14.064 2.909 19.121 hybrid contribution 0.172 0.385 -0.456 0.621 sum 12.794 -13.679 2.453 18.890 Atomic orbital electron populations 1.69968 1.06117 1.27028 1.50529 1.24939 0.94922 0.99388 0.95192 0.86331 0.80004 0.82817 0.77628 1.19494 1.20917 1.20857 1.21048 0.93916 0.89286 1.50763 0.91589 1.20185 0.88831 0.83577 0.95403 1.87918 1.35270 1.13005 1.95140 1.22212 0.94233 0.85173 0.99925 1.22398 0.96515 0.98748 0.90155 1.64874 1.16906 1.07165 1.33161 1.23618 0.96475 0.87961 0.98135 1.22735 0.95771 0.92839 1.00309 0.89539 1.22125 0.94294 0.97836 1.01561 1.22311 0.97579 0.96324 0.99686 1.22588 0.96943 0.97505 0.98414 1.22692 0.93614 0.96662 0.97319 0.89392 1.22042 0.93048 0.88233 0.99822 0.89687 1.23522 0.79855 0.86146 0.78544 1.90710 1.27548 1.84456 1.34836 1.84545 1.55799 1.21410 1.71818 0.92717 0.97917 0.97639 0.93782 0.93284 0.93815 0.90403 0.87866 0.91263 0.90595 0.91654 0.91904 0.91427 0.91293 0.91026 0.73643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -14.48 9.43 -34.44 -0.32 -14.81 16 8 H 0.07 1.84 7.81 -52.48 -0.41 1.43 16 9 C 0.19 5.15 5.69 36.00 0.20 5.36 16 10 O -0.39 -8.82 6.60 -35.23 -0.23 -9.05 16 11 C 0.06 1.16 6.00 37.16 0.22 1.38 16 12 C 0.05 0.78 5.61 -3.83 -0.02 0.76 16 13 N -0.50 -7.87 4.64 -223.41 -1.04 -8.91 16 14 C 0.06 1.06 3.93 -1.53 -0.01 1.05 16 15 C -0.10 -1.32 3.92 -88.15 -0.35 -1.66 16 16 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 17 C -0.12 -1.47 6.37 -25.81 -0.16 -1.63 16 18 C -0.12 -1.23 6.82 -25.19 -0.17 -1.40 16 19 C -0.12 -1.19 6.15 -24.89 -0.15 -1.34 16 20 C -0.08 -0.99 3.42 -87.97 -0.30 -1.29 16 21 H 0.09 0.98 7.80 -51.93 -0.41 0.58 16 22 C 0.08 1.04 2.54 -67.86 -0.17 0.86 16 23 H 0.09 1.02 6.79 -51.93 -0.35 0.67 16 24 C 0.48 6.35 7.43 36.00 0.27 6.61 16 25 O -0.49 -8.20 17.31 -18.75 -0.32 -8.53 16 26 O -0.52 -5.09 13.42 -39.24 -0.53 -5.62 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 29 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.04 0.65 7.81 -51.93 -0.41 0.25 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.10 2.03 7.03 -51.93 -0.36 1.66 16 35 H 0.07 1.23 6.80 -51.93 -0.35 0.87 16 36 H 0.08 1.05 7.42 -51.93 -0.39 0.67 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.77 7.59 -51.93 -0.39 0.38 16 42 H 0.41 2.21 9.10 45.56 0.41 2.62 16 LS Contribution 336.78 15.07 5.08 5.08 Total: -1.00 -32.22 336.78 -8.41 -40.63 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -6.02 Total: 0.44 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -1.06 Total: -4.61 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: -0.30 Total: -34.72 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -1.08 Total: -23.20 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.22 -8.41 -40.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385186370.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.239 kcal (2) G-P(sol) polarization free energy of solvation -32.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds