Wall clock time and date at job start Tue Mar 31 2020 05:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99966 * 2 1 4 4 H 1.48504 * 109.47399 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47385 * 300.00031 * 3 2 1 6 6 H 1.48506 * 109.47170 * 59.99983 * 3 2 1 7 7 C 1.37879 * 120.00416 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00422 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99735 * 0.27654 * 7 2 1 10 10 O 1.42892 * 109.47434 * 179.72343 * 9 7 2 11 11 C 1.42902 * 114.00428 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47079 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.47365 * 63.16651 * 12 11 10 14 14 C 1.50031 * 111.00405 * 176.40410 * 13 12 11 15 15 C 1.51526 * 102.45710 * 212.65410 * 14 13 12 16 16 H 1.09000 * 111.11351 * 288.16107 * 15 14 13 17 17 C 1.51568 * 123.31235 * 151.75170 * 15 14 13 18 18 C 1.57710 * 101.18421 * 207.17569 * 17 15 14 19 19 C 1.55997 * 105.65641 * 26.17864 * 18 17 15 20 20 C 1.49730 * 103.98900 * 6.43373 * 19 18 17 21 21 H 1.09005 * 108.55466 * 78.04898 * 20 19 18 22 22 C 1.49697 * 110.99835 * 56.62180 * 13 12 11 23 23 H 1.08992 * 110.40431 * 356.52989 * 22 13 12 24 24 C 1.50707 * 110.39807 * 234.11035 * 22 13 12 25 25 O 1.20817 * 120.00197 * 341.45408 * 24 22 13 26 26 O 1.34228 * 119.99679 * 161.45934 * 24 22 13 27 27 H 0.96998 * 120.00174 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46976 * 299.72709 * 9 7 2 29 29 H 1.09005 * 109.47233 * 59.72440 * 9 7 2 30 30 H 1.08999 * 109.46826 * 300.00427 * 11 10 9 31 31 H 1.09002 * 109.46778 * 60.00216 * 11 10 9 32 32 H 1.09008 * 109.46949 * 183.16417 * 12 11 10 33 33 H 1.09000 * 109.47684 * 303.16343 * 12 11 10 34 34 H 1.08998 * 110.81156 * 330.89345 * 14 13 12 35 35 H 1.09002 * 110.80789 * 94.41161 * 14 13 12 36 36 H 1.08997 * 110.95880 * 326.02323 * 17 15 14 37 37 H 1.08998 * 110.96182 * 89.76630 * 17 15 14 38 38 H 1.09001 * 110.66978 * 266.91439 * 18 17 15 39 39 H 1.09008 * 109.89102 * 145.02947 * 18 17 15 40 40 H 1.08998 * 110.52717 * 247.81236 * 19 18 17 41 41 H 1.08996 * 110.52763 * 125.05643 * 19 18 17 42 42 H 0.96699 * 117.00432 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0074 10 8 2.1797 -3.5852 -0.0131 11 6 1.5652 -4.8754 -0.0194 12 6 2.6482 -5.9560 -0.0258 13 7 3.4373 -5.8658 1.2100 14 6 4.4549 -6.9661 1.2797 15 6 4.5390 -7.2396 2.7677 16 1 5.0489 -6.4286 3.2878 17 6 4.9096 -8.5907 3.3461 18 6 4.1727 -8.5394 4.7395 19 6 2.9752 -7.5585 4.5467 20 6 2.9926 -7.2497 3.0817 21 1 2.5521 -8.0899 2.5448 22 6 2.5591 -5.9800 2.4168 23 1 1.5123 -6.0445 2.1203 24 6 2.7746 -4.8055 3.3363 25 8 3.7742 -4.1345 3.2351 26 8 1.8559 -4.5050 4.2677 27 1 -0.4850 0.8400 0.0004 28 1 0.6244 -2.5615 0.8822 29 1 0.6245 -2.5522 -0.8977 30 1 0.9453 -4.9868 0.8702 31 1 0.9448 -4.9780 -0.9097 32 1 2.1805 -6.9387 -0.0872 33 1 3.3019 -5.8104 -0.8858 34 1 4.1081 -7.8490 0.7428 35 1 5.4167 -6.6292 0.8929 36 1 4.5354 -9.3994 2.7183 37 1 5.9876 -8.6732 3.4845 38 1 4.8422 -8.1679 5.5153 39 1 3.8073 -9.5322 5.0026 40 1 3.1270 -6.6506 5.1304 41 1 2.0378 -8.0405 4.8245 42 1 2.0378 -3.7425 4.8339 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385186374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:31 Heat of formation + Delta-G solvation = -116.849864 kcal Electronic energy + Delta-G solvation = -23659.734424 eV Core-core repulsion = 20219.281562 eV Total energy + Delta-G solvation = -3440.452862 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.18778 -38.92913 -37.06004 -35.72758 -35.24611 -32.67194 -30.88804 -30.77420 -27.63464 -26.92374 -26.24732 -23.51104 -22.30705 -22.05645 -20.83508 -20.20834 -19.25772 -17.64210 -17.00375 -16.31964 -16.14574 -15.74803 -15.43295 -14.89920 -14.68435 -14.32502 -14.09859 -13.83889 -13.76343 -13.20424 -12.86943 -12.67953 -12.55603 -12.11802 -11.73432 -11.57901 -11.43291 -11.32562 -11.12505 -11.02476 -10.95132 -10.74123 -10.72907 -10.67888 -10.41877 -10.17647 -9.95673 -9.91076 -9.01689 -8.75300 -8.25242 -8.09737 -6.04580 -4.04765 2.66923 3.15596 3.34066 3.40190 3.48914 3.76974 3.98387 4.41375 4.45689 4.58625 4.82338 4.87490 4.94283 5.07183 5.19212 5.24809 5.31211 5.32053 5.42248 5.47161 5.50521 5.56735 5.58843 5.69232 5.74720 5.80039 5.89303 5.93961 6.02929 6.05664 6.12113 6.22327 6.26728 6.79829 6.93665 7.06219 7.14753 7.47537 7.88581 8.22770 8.39239 8.66163 9.10385 9.59807 11.07210 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.025724 B = 0.004384 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.206435 B = 6385.142094 C = 6738.023746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.507 4.507 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.375 6.375 11 C 0.058 3.942 12 C 0.055 3.945 13 N -0.490 5.490 14 C 0.058 3.942 15 C -0.119 4.119 16 H 0.095 0.905 17 C -0.105 4.105 18 C -0.121 4.121 19 C -0.104 4.104 20 C -0.125 4.125 21 H 0.081 0.919 22 C 0.097 3.903 23 H 0.103 0.897 24 C 0.487 3.513 25 O -0.479 6.479 26 O -0.525 6.525 27 H 0.262 0.738 28 H 0.001 0.999 29 H 0.003 0.997 30 H 0.034 0.966 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.127 -20.019 8.055 22.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.545 4.545 8 H 0.086 0.914 9 C 0.120 3.880 10 O -0.295 6.295 11 C -0.020 4.020 12 C -0.073 4.073 13 N -0.215 5.215 14 C -0.069 4.069 15 C -0.138 4.138 16 H 0.113 0.887 17 C -0.143 4.143 18 C -0.159 4.159 19 C -0.142 4.142 20 C -0.145 4.145 21 H 0.099 0.901 22 C -0.013 4.013 23 H 0.121 0.879 24 C 0.325 3.675 25 O -0.363 6.363 26 O -0.338 6.338 27 H 0.072 0.928 28 H 0.019 0.981 29 H 0.021 0.979 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 5.640 -19.498 7.720 21.716 hybrid contribution -0.478 0.767 0.261 0.940 sum 5.162 -18.731 7.980 21.005 Atomic orbital electron populations 1.69976 1.06074 1.26889 1.51184 1.24935 0.94950 0.99374 0.95302 0.86305 0.80209 0.82653 0.77516 1.19403 1.20893 1.20908 1.21105 0.94191 0.89255 1.49931 0.91431 1.20185 0.88820 0.84015 0.94988 1.88010 1.34411 1.12089 1.94957 1.22404 0.93819 0.86759 0.99029 1.22373 0.95977 0.96152 0.92794 1.64578 1.12765 1.44526 0.99635 1.22534 0.96884 0.92307 0.95166 1.22684 0.95764 0.98922 0.96434 0.88714 1.22117 1.00310 0.95842 0.96065 1.23192 0.96463 0.99122 0.97085 1.21381 0.98746 0.99783 0.94259 1.21950 0.98031 0.96479 0.98039 0.90050 1.20891 0.99220 0.89861 0.91299 0.87937 1.22940 0.80594 0.84961 0.78956 1.90702 1.28976 1.49212 1.67415 1.84470 1.50750 1.51915 1.46617 0.92848 0.98146 0.97948 0.94837 0.93779 0.93880 0.89096 0.93024 0.89376 0.91141 0.91278 0.91375 0.91600 0.91379 0.91071 0.73410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.69 13.29 55.43 0.74 -26.96 16 2 C 0.05 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 22.75 29.54 -169.99 -5.02 17.73 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.51 -15.64 9.43 -34.44 -0.32 -15.96 16 8 H 0.07 2.12 7.81 -52.49 -0.41 1.71 16 9 C 0.19 5.56 5.69 36.01 0.20 5.77 16 10 O -0.38 -9.54 10.25 -35.23 -0.36 -9.90 16 11 C 0.06 1.10 5.84 37.15 0.22 1.32 16 12 C 0.05 0.82 5.28 -3.83 -0.02 0.80 16 13 N -0.49 -7.78 4.57 -225.80 -1.03 -8.81 16 14 C 0.06 0.70 6.47 -2.82 -0.02 0.68 16 15 C -0.12 -1.33 2.98 -89.46 -0.27 -1.60 16 16 H 0.09 1.31 7.62 -51.93 -0.40 0.91 16 17 C -0.11 -0.87 6.69 -24.88 -0.17 -1.03 16 18 C -0.12 -0.96 7.00 -22.55 -0.16 -1.12 16 19 C -0.10 -1.00 6.46 -26.75 -0.17 -1.17 16 20 C -0.13 -1.40 2.26 -91.23 -0.21 -1.60 16 21 H 0.08 0.80 8.00 -51.93 -0.42 0.38 16 22 C 0.10 1.43 2.52 -68.91 -0.17 1.26 16 23 H 0.10 1.48 5.89 -51.93 -0.31 1.17 16 24 C 0.49 8.50 6.35 36.01 0.23 8.73 16 25 O -0.48 -10.22 17.00 -18.74 -0.32 -10.54 16 26 O -0.53 -7.75 13.24 -39.25 -0.52 -8.27 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 29 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.03 0.62 6.06 -51.93 -0.31 0.31 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.04 0.51 8.04 -51.92 -0.42 0.09 16 33 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.05 0.51 7.81 -51.93 -0.41 0.11 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16 40 H 0.07 0.74 7.15 -51.93 -0.37 0.37 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.41 4.60 9.10 45.56 0.41 5.02 16 LS Contribution 338.83 15.07 5.11 5.11 Total: -1.00 -36.11 338.83 -8.35 -44.46 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -5.98 Total: -0.44 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -0.95 Total: -2.39 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: -0.30 Total: -35.77 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -1.20 Total: -28.71 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.11 -8.35 -44.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385186374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.393 kcal (2) G-P(sol) polarization free energy of solvation -36.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds