Wall clock time and date at job start Tue Mar 31 2020 06:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47035 * 2 1 4 4 C 1.52999 * 109.46643 * 119.99637 * 2 1 3 5 5 N 1.46501 * 109.47223 * 65.00432 * 4 2 1 6 6 C 1.46500 * 119.99843 * 269.99313 * 5 4 2 7 7 C 1.50694 * 109.47450 * 270.00211 * 6 5 4 8 8 H 1.07996 * 120.00087 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99978 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99880 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 119.99941 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47184 * 90.00177 * 11 9 7 13 13 H 1.48498 * 109.46995 * 210.00116 * 11 9 7 14 14 H 1.48497 * 109.47557 * 330.00043 * 11 9 7 15 15 C 1.34780 * 120.00129 * 89.99739 * 5 4 2 16 16 O 1.21280 * 119.99949 * 179.97438 * 15 5 4 17 17 C 1.50696 * 119.99994 * 359.97438 * 15 5 4 18 18 H 1.08999 * 112.84914 * 51.69653 * 17 15 5 19 19 C 1.53781 * 113.61615 * 280.49725 * 17 15 5 20 20 C 1.53786 * 87.17350 * 219.89494 * 19 17 15 21 21 C 1.53781 * 113.69134 * 182.96123 * 17 15 5 22 22 H 1.09003 * 113.61469 * 25.44241 * 21 17 15 23 23 C 1.50703 * 113.61495 * 254.54116 * 21 17 15 24 24 O 1.20830 * 120.00069 * 0.02562 * 23 21 17 25 25 O 1.34228 * 119.99960 * 179.97438 * 23 21 17 26 26 H 1.09007 * 109.46761 * 60.00484 * 1 2 3 27 27 H 1.08996 * 109.47003 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47538 * 300.00547 * 1 2 3 29 29 H 1.08999 * 109.47036 * 239.99443 * 2 1 3 30 30 H 1.08999 * 109.47033 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46951 * 299.99400 * 3 2 1 32 32 H 1.08996 * 109.47403 * 59.99371 * 3 2 1 33 33 H 1.09000 * 109.47529 * 304.99709 * 4 2 1 34 34 H 1.09007 * 109.46899 * 184.99809 * 4 2 1 35 35 H 1.09000 * 109.46739 * 30.00428 * 6 5 4 36 36 H 1.09001 * 109.46662 * 149.99585 * 6 5 4 37 37 H 0.97005 * 120.00112 * 179.97438 * 10 9 7 38 38 H 1.09002 * 113.61445 * 334.48493 * 19 17 15 39 39 H 1.09002 * 113.61408 * 105.30224 * 19 17 15 40 40 H 1.08992 * 113.61675 * 140.02412 * 20 19 17 41 41 H 1.09000 * 113.60973 * 270.92699 * 20 19 17 42 42 H 0.96701 * 116.99856 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1907 6 6 0.3745 -2.5659 1.7614 7 6 0.5715 -2.9407 3.2076 8 1 1.5507 -2.8644 3.6567 9 6 -0.4982 -3.3820 3.9573 10 7 -0.3262 -3.7096 5.2193 11 14 -2.1918 -3.5147 3.1804 12 1 -2.3629 -4.8684 2.5944 13 1 -3.2309 -3.2890 4.2169 14 1 -2.3279 -2.4922 2.1122 15 6 2.4715 -3.0330 0.6118 16 8 2.1509 -4.2017 0.5636 17 6 3.7858 -2.5875 0.0243 18 1 4.3840 -2.0012 0.7217 19 6 3.6524 -1.9433 -1.3657 20 6 4.9371 -2.6945 -1.7533 21 6 4.5709 -3.7179 -0.6616 22 1 3.9409 -4.5320 -1.0201 23 6 5.7554 -4.2002 0.1356 24 8 6.0065 -3.7007 1.2068 25 8 6.5309 -5.1853 -0.3439 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6053 -0.2616 2.1370 34 1 3.1263 -0.6443 1.2953 35 1 -0.3484 -1.7531 1.6919 36 1 0.0042 -3.4297 1.2093 37 1 -1.0789 -4.0197 5.7468 38 1 2.7712 -2.2721 -1.9167 39 1 3.7661 -0.8592 -1.3573 40 1 4.9155 -3.1044 -2.7630 41 1 5.8495 -2.1374 -1.5409 42 1 7.2793 -5.4605 0.2032 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397345125.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:05 Heat of formation + Delta-G solvation = -115.130608 kcal Electronic energy + Delta-G solvation = -23711.714346 eV Core-core repulsion = 20271.336036 eV Total energy + Delta-G solvation = -3440.378310 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.93686 -39.41936 -37.39158 -36.35778 -35.95486 -33.57206 -32.26819 -28.98538 -27.40790 -26.94862 -26.47697 -25.37281 -22.41116 -22.23144 -20.27193 -19.80621 -18.54838 -17.84258 -17.20581 -16.90355 -16.43485 -15.72787 -15.50336 -14.67993 -14.53648 -14.29040 -14.00343 -13.54249 -13.31103 -12.96519 -12.64290 -12.48309 -12.32153 -12.24191 -12.11232 -11.81564 -11.58686 -11.51213 -11.46419 -11.08707 -11.00720 -10.96889 -10.77068 -10.61395 -10.44950 -10.33684 -10.18181 -10.06971 -9.49245 -8.94826 -8.55709 -7.67292 -6.05450 -4.03715 2.25158 3.04963 3.27601 3.29648 3.35450 3.37121 3.83878 4.27054 4.38726 4.41267 4.60582 4.74838 5.01452 5.09934 5.14430 5.26823 5.34824 5.40549 5.53207 5.57785 5.62522 5.69605 5.71614 5.77988 5.81185 5.87022 6.03352 6.09506 6.12395 6.22136 6.25508 6.48204 6.52223 6.54916 6.76717 6.95658 7.37719 7.64929 7.94358 8.27308 8.50459 8.95094 9.01549 9.54623 11.08163 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014534 B = 0.006253 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.029851 B = 4476.536841 C = 5728.154347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.144 4.144 4 C 0.115 3.885 5 N -0.584 5.584 6 C 0.213 3.787 7 C -0.528 4.528 8 H 0.074 0.926 9 C 0.072 3.928 10 N -0.898 5.898 11 Si 0.874 3.126 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.519 3.481 16 O -0.542 6.542 17 C -0.115 4.115 18 H 0.124 0.876 19 C -0.123 4.123 20 C -0.119 4.119 21 C -0.089 4.089 22 H 0.137 0.863 23 C 0.490 3.510 24 O -0.510 6.510 25 O -0.517 6.517 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.037 0.963 36 H 0.034 0.966 37 H 0.264 0.736 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.570 7.583 -16.056 20.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.140 4.140 3 C -0.202 4.202 4 C -0.009 4.009 5 N -0.314 5.314 6 C 0.092 3.908 7 C -0.566 4.566 8 H 0.092 0.908 9 C -0.130 4.130 10 N -0.536 5.536 11 Si 0.701 3.299 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.305 3.695 16 O -0.420 6.420 17 C -0.137 4.137 18 H 0.141 0.859 19 C -0.161 4.161 20 C -0.157 4.157 21 C -0.109 4.109 22 H 0.155 0.845 23 C 0.332 3.668 24 O -0.397 6.397 25 O -0.328 6.328 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 8.999 7.161 -15.832 19.568 hybrid contribution -0.402 -0.369 0.434 0.697 sum 8.597 6.792 -15.398 18.898 Atomic orbital electron populations 1.21947 0.95044 1.02626 1.01140 1.21738 0.96813 0.96084 0.99345 1.21775 1.00679 0.95880 1.01820 1.21582 0.99527 0.81815 0.98010 1.47813 1.21025 1.06678 1.55875 1.19774 0.80671 0.95708 0.94628 1.21365 0.97461 1.44371 0.93416 0.90769 1.24857 0.98808 0.94662 0.94707 1.69905 1.31550 1.44819 1.07357 0.86878 0.84407 0.79271 0.79307 1.19977 1.21085 1.19009 1.19984 0.85068 0.85912 0.78532 1.90659 1.75075 1.17407 1.58827 1.22770 0.95873 0.97150 0.97884 0.85858 1.22905 0.98238 1.00582 0.94362 1.22890 0.98693 0.95996 0.98114 1.22476 0.92856 0.98795 0.96724 0.84507 1.23328 0.82918 0.76003 0.84538 1.90733 1.70600 1.56137 1.22252 1.84543 1.42359 1.52099 1.53834 0.93440 0.91753 0.92503 0.90664 0.92780 0.92816 0.92457 0.89787 0.91291 0.94531 0.94812 0.92622 0.88986 0.89543 0.89637 0.89391 0.73529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.18 37.16 0.30 -1.75 16 2 C -0.12 -1.50 2.93 -90.62 -0.27 -1.76 16 3 C -0.14 -1.41 9.19 37.16 0.34 -1.07 16 4 C 0.11 1.81 4.65 -4.04 -0.02 1.79 16 5 N -0.58 -11.89 2.28 -175.06 -0.40 -12.29 16 6 C 0.21 5.17 3.30 -5.20 -0.02 5.16 16 7 C -0.53 -15.42 9.94 -34.44 -0.34 -15.76 16 8 H 0.07 2.41 8.06 -52.49 -0.42 1.99 16 9 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 10 N -0.90 -28.20 13.96 55.43 0.77 -27.42 16 11 Si 0.87 21.76 27.47 -169.99 -4.67 17.10 16 12 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 15 C 0.52 10.55 7.20 -10.99 -0.08 10.47 16 16 O -0.54 -13.31 15.51 5.56 0.09 -13.22 16 17 C -0.12 -1.72 2.23 -90.96 -0.20 -1.92 16 18 H 0.12 1.85 6.39 -51.93 -0.33 1.52 16 19 C -0.12 -1.28 5.55 -25.92 -0.14 -1.43 16 20 C -0.12 -1.12 7.65 -25.77 -0.20 -1.31 16 21 C -0.09 -1.21 3.57 -90.82 -0.32 -1.53 16 22 H 0.14 1.97 7.48 -51.93 -0.39 1.58 16 23 C 0.49 7.13 7.86 36.01 0.28 7.41 16 24 O -0.51 -9.13 16.66 -18.75 -0.31 -9.44 16 25 O -0.52 -5.85 13.42 -39.25 -0.53 -6.38 16 26 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 27 H 0.06 1.04 5.89 -51.93 -0.31 0.73 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 0.87 5.09 -51.93 -0.26 0.61 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.47 8.14 -51.92 -0.42 0.04 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 34 H 0.07 0.97 6.29 -51.93 -0.33 0.64 16 35 H 0.04 0.84 5.04 -51.93 -0.26 0.58 16 36 H 0.03 0.88 6.85 -51.93 -0.36 0.53 16 37 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 38 H 0.09 0.98 8.01 -51.93 -0.42 0.56 16 39 H 0.09 0.74 7.30 -51.93 -0.38 0.36 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.73 8.10 -51.93 -0.42 0.31 16 42 H 0.41 2.86 9.10 45.56 0.41 3.27 16 LS Contribution 336.61 15.07 5.07 5.07 Total: -1.00 -36.73 336.61 -6.32 -43.04 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.58 Total: 3.22 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -0.76 Total: 0.32 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.37 Total: -39.71 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.75 Total: -29.04 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.73 -6.32 -43.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397345125.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.087 kcal (2) G-P(sol) polarization free energy of solvation -36.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds