Wall clock time and date at job start Tue Mar 31 2020 06:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47211 * 2 1 4 4 C 1.53004 * 109.47015 * 119.99916 * 2 1 3 5 5 N 1.46499 * 109.46891 * 176.78473 * 4 2 1 6 6 C 1.46501 * 120.00235 * 274.87953 * 5 4 2 7 7 C 1.50700 * 109.47220 * 270.00168 * 6 5 4 8 8 H 1.07996 * 119.99598 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99853 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99820 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99665 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47172 * 59.99851 * 11 9 7 13 13 H 1.48505 * 109.46836 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47368 * 299.99803 * 11 9 7 15 15 C 1.34781 * 120.00122 * 94.88046 * 5 4 2 16 16 O 1.21278 * 120.00390 * 183.91129 * 15 5 4 17 17 C 1.50700 * 119.99668 * 3.91288 * 15 5 4 18 18 H 1.08998 * 112.90624 * 337.80735 * 17 15 5 19 19 C 1.53775 * 113.61797 * 109.06445 * 17 15 5 20 20 C 1.53783 * 87.08366 * 89.11122 * 19 17 15 21 21 C 1.53782 * 113.61342 * 206.56114 * 17 15 5 22 22 H 1.08997 * 113.61756 * 156.33662 * 21 17 15 23 23 C 1.50696 * 113.61464 * 25.43084 * 21 17 15 24 24 O 1.20827 * 120.00345 * 28.95364 * 23 21 17 25 25 O 1.34229 * 120.00390 * 208.95275 * 23 21 17 26 26 H 1.08997 * 109.47391 * 300.00064 * 1 2 3 27 27 H 1.08999 * 109.47479 * 59.99963 * 1 2 3 28 28 H 1.09000 * 109.46937 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47391 * 239.99936 * 2 1 3 30 30 H 1.08995 * 109.47257 * 189.65523 * 3 2 1 31 31 H 1.09000 * 109.46912 * 309.66452 * 3 2 1 32 32 H 1.09005 * 109.46890 * 69.65476 * 3 2 1 33 33 H 1.09000 * 109.46767 * 56.79044 * 4 2 1 34 34 H 1.08997 * 109.47286 * 296.78633 * 4 2 1 35 35 H 1.09006 * 109.47079 * 30.00380 * 6 5 4 36 36 H 1.09001 * 109.47327 * 149.99967 * 6 5 4 37 37 H 0.97003 * 119.99409 * 180.02562 * 10 9 7 38 38 H 1.09004 * 113.61879 * 203.66423 * 19 17 15 39 39 H 1.09002 * 113.61094 * 334.56526 * 19 17 15 40 40 H 1.08997 * 113.61543 * 270.88336 * 20 19 17 41 41 H 1.09000 * 113.68966 * 139.99279 * 20 19 17 42 42 H 0.96698 * 117.00375 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5029 -0.7887 1.2112 6 6 4.1675 -1.8751 0.4871 7 6 4.3897 -3.0380 1.4194 8 1 4.0684 -2.9740 2.4485 9 6 5.0032 -4.1836 0.9586 10 7 5.3940 -4.2615 -0.2947 11 14 5.2780 -5.6253 2.1141 12 1 3.9699 -6.1019 2.6308 13 1 5.9507 -6.7269 1.3798 14 1 6.1313 -5.1936 3.2501 15 6 4.2374 0.1487 1.8423 16 8 5.4468 0.1339 1.7519 17 6 3.5560 1.2153 2.6602 18 1 2.5162 1.3710 2.3725 19 6 3.7580 1.0525 4.1759 20 6 5.0264 1.9078 4.0194 21 6 4.3660 2.5177 2.7717 22 1 3.7553 3.3948 2.9856 23 6 5.3222 2.7337 1.6272 24 8 5.0719 2.2780 0.5365 25 8 6.4521 3.4325 1.8193 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1162 1.4474 -0.1723 31 1 1.5427 2.0037 -0.7911 32 1 1.8242 1.9042 0.9636 33 1 1.6304 -1.7310 1.2785 34 1 1.7244 -0.1753 2.1383 35 1 3.5413 -2.1924 -0.3468 36 1 5.1275 -1.5249 0.1077 37 1 5.8253 -5.0676 -0.6190 38 1 2.9810 1.5290 4.7738 39 1 3.9588 0.0257 4.4818 40 1 5.9212 1.3257 3.7994 41 1 5.1750 2.6229 4.8285 42 1 7.0344 3.5443 1.0554 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397345130.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:08 Heat of formation + Delta-G solvation = -110.592155 kcal Electronic energy + Delta-G solvation = -24292.742426 eV Core-core repulsion = 20852.560918 eV Total energy + Delta-G solvation = -3440.181507 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.96377 -38.98986 -37.19333 -35.99306 -35.66194 -33.53113 -32.19408 -28.23293 -27.25562 -26.91383 -26.13494 -25.17556 -22.80018 -21.86787 -20.43826 -19.87651 -17.88295 -17.73177 -17.09305 -16.38773 -16.04491 -15.41865 -14.97497 -14.83634 -14.29216 -14.23418 -13.99776 -13.69830 -12.99866 -12.85880 -12.66189 -12.36386 -12.19161 -11.95419 -11.73691 -11.60151 -11.41300 -11.26628 -11.09893 -10.90424 -10.84994 -10.77208 -10.59942 -10.53145 -10.46411 -10.10251 -9.94138 -9.87788 -9.56716 -8.74450 -8.39303 -7.52399 -5.99879 -4.04904 2.62532 3.29099 3.33003 3.37431 3.39469 3.46427 3.90480 4.41666 4.48038 4.65837 4.82982 4.91593 5.13486 5.25310 5.31094 5.35452 5.43368 5.48965 5.64980 5.70481 5.73045 5.84023 5.85581 5.97392 6.02726 6.04509 6.08837 6.17049 6.33562 6.37467 6.42668 6.65924 6.68382 6.95998 7.16249 7.55323 7.64470 7.97203 8.28024 8.29332 8.53746 8.95214 9.19943 9.59963 11.07909 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014452 B = 0.006618 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.984475 B = 4229.895732 C = 5098.182215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.155 4.155 4 C 0.115 3.885 5 N -0.589 5.589 6 C 0.250 3.750 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.894 5.894 11 Si 0.897 3.103 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.277 1.277 15 C 0.538 3.462 16 O -0.539 6.539 17 C -0.129 4.129 18 H 0.107 0.893 19 C -0.127 4.127 20 C -0.119 4.119 21 C -0.089 4.089 22 H 0.128 0.872 23 C 0.494 3.506 24 O -0.495 6.495 25 O -0.521 6.521 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.030 0.970 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.666 14.618 6.233 17.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 C -0.212 4.212 4 C -0.009 4.009 5 N -0.319 5.319 6 C 0.130 3.870 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.324 3.676 16 O -0.417 6.417 17 C -0.150 4.150 18 H 0.125 0.875 19 C -0.164 4.164 20 C -0.156 4.156 21 C -0.109 4.109 22 H 0.145 0.855 23 C 0.335 3.665 24 O -0.381 6.381 25 O -0.333 6.333 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.048 0.952 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.119 0.881 41 H 0.094 0.906 42 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -7.261 14.258 6.055 17.108 hybrid contribution 0.398 -0.815 -0.057 0.909 sum -6.863 13.443 5.999 16.242 Atomic orbital electron populations 1.21771 0.95292 1.01643 1.01255 1.21566 0.95092 0.96967 1.00034 1.22089 1.03419 0.95310 1.00381 1.21561 0.81701 1.01092 0.96558 1.48012 1.05286 1.26947 1.51660 1.19212 0.93638 0.82758 0.91346 1.21414 1.39107 0.98987 0.96979 0.92607 1.24934 0.95384 0.98584 0.95198 1.69936 1.40450 1.28423 1.14484 0.86585 0.78351 0.81747 0.80872 1.20273 1.21200 1.20250 1.19316 0.87131 0.81450 0.79682 1.90621 1.14086 1.74558 1.62451 1.22818 1.00958 0.93782 0.97477 0.87491 1.22784 0.98198 1.01996 0.93463 1.22914 0.98889 0.98717 0.95101 1.22322 0.95874 0.98750 0.93917 0.85475 1.22910 0.80432 0.73701 0.89436 1.90702 1.74676 1.45643 1.27108 1.84467 1.33465 1.69398 1.45967 0.93006 0.92916 0.92588 0.90637 0.90367 0.93567 0.93342 0.90280 0.91560 0.95208 0.93883 0.92729 0.89051 0.90022 0.88084 0.90572 0.73711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.18 37.16 0.34 -1.33 16 2 C -0.12 -1.78 3.14 -90.62 -0.28 -2.06 16 3 C -0.16 -2.30 7.84 37.16 0.29 -2.01 16 4 C 0.12 1.96 4.88 -4.04 -0.02 1.94 16 5 N -0.59 -12.85 2.26 -175.05 -0.40 -13.25 16 6 C 0.25 6.74 5.21 -5.19 -0.03 6.72 16 7 C -0.53 -15.12 9.39 -34.44 -0.32 -15.44 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -27.11 13.29 55.43 0.74 -26.37 16 11 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 15 C 0.54 11.35 4.48 -10.98 -0.05 11.30 16 16 O -0.54 -13.59 12.66 -16.48 -0.21 -13.80 16 17 C -0.13 -1.94 2.60 -90.96 -0.24 -2.18 16 18 H 0.11 1.40 3.68 -51.93 -0.19 1.21 16 19 C -0.13 -1.59 7.66 -25.92 -0.20 -1.79 16 20 C -0.12 -1.54 7.18 -25.92 -0.19 -1.73 16 21 C -0.09 -1.19 4.20 -90.96 -0.38 -1.57 16 22 H 0.13 1.22 8.14 -51.93 -0.42 0.79 16 23 C 0.49 8.02 6.24 36.00 0.22 8.25 16 24 O -0.50 -9.84 13.24 -26.08 -0.35 -10.18 16 25 O -0.52 -7.05 13.36 -39.26 -0.52 -7.58 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.08 1.44 5.20 -51.93 -0.27 1.17 16 31 H 0.05 0.62 8.12 -51.93 -0.42 0.19 16 32 H 0.05 0.62 5.78 -51.93 -0.30 0.32 16 33 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 34 H 0.07 0.94 5.93 -51.93 -0.31 0.63 16 35 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 36 H 0.04 1.34 7.37 -51.93 -0.38 0.95 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.17 8.09 -51.93 -0.42 0.75 16 40 H 0.10 1.65 7.19 -51.93 -0.37 1.28 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.40 4.05 9.10 45.56 0.41 4.47 16 LS Contribution 332.89 15.07 5.02 5.02 Total: -1.00 -35.57 332.89 -7.29 -42.86 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.60 Total: 4.47 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -0.95 Total: 1.77 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.34 Total: -39.62 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -1.08 Total: -31.56 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.57 -7.29 -42.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397345130.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.736 kcal (2) G-P(sol) polarization free energy of solvation -35.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds