Wall clock time and date at job start Tue Mar 31 2020 05:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99918 * 2 1 4 4 O 1.20827 * 119.99659 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99999 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.50073 * 300.06119 * 5 3 2 7 7 C 1.53045 * 109.49632 * 179.97438 * 5 3 2 8 8 C 1.53039 * 109.53694 * 178.65052 * 7 5 3 9 9 C 1.53196 * 109.33748 * 61.35198 * 8 7 5 10 10 N 1.46931 * 108.77131 * 305.41286 * 9 8 7 11 11 C 1.34775 * 120.60689 * 233.57988 * 10 9 8 12 12 O 1.21283 * 120.00376 * 179.97438 * 11 10 9 13 13 C 1.50706 * 119.99836 * 359.97438 * 11 10 9 14 14 C 1.53005 * 109.47219 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47067 * 180.02562 * 14 13 11 16 16 H 1.08006 * 120.00072 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00067 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99710 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00019 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47142 * 59.99443 * 19 17 15 21 21 H 1.48500 * 109.46748 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47171 * 299.99526 * 19 17 15 23 23 C 1.46928 * 118.76737 * 53.55408 * 10 9 8 24 24 H 1.09007 * 109.47027 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47463 * 300.00212 * 1 2 3 26 26 H 1.09000 * 109.47055 * 60.00787 * 1 2 3 27 27 H 1.08997 * 109.46916 * 299.93839 * 6 5 3 28 28 H 1.09003 * 109.46933 * 59.93358 * 6 5 3 29 29 H 1.08991 * 109.47471 * 179.97438 * 6 5 3 30 30 H 1.09001 * 109.45732 * 58.63357 * 7 5 3 31 31 H 1.08995 * 109.46248 * 298.67067 * 7 5 3 32 32 H 1.09002 * 109.49756 * 181.31922 * 8 7 5 33 33 H 1.09000 * 109.49883 * 301.38665 * 8 7 5 34 34 H 1.08996 * 109.58760 * 65.17188 * 9 8 7 35 35 H 1.09001 * 109.58519 * 185.59185 * 9 8 7 36 36 H 1.09005 * 109.47141 * 300.00250 * 13 11 10 37 37 H 1.09005 * 109.46868 * 60.00194 * 13 11 10 38 38 H 1.08999 * 109.46866 * 299.99779 * 14 13 11 39 39 H 1.09002 * 109.46852 * 59.99804 * 14 13 11 40 40 H 0.97002 * 120.00051 * 180.02562 * 18 17 15 41 41 H 1.08997 * 109.58597 * 186.62384 * 23 10 9 42 42 H 1.09001 * 109.69741 * 66.27202 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1137 0.5804 1.2492 7 6 4.0009 2.7423 -0.0002 8 6 5.5287 2.8237 0.0344 9 6 6.1010 2.1493 -1.2165 10 7 5.5706 0.7817 -1.3009 11 6 6.4035 -0.2711 -1.4212 12 8 5.9538 -1.3954 -1.4895 13 6 7.8936 -0.0512 -1.4710 14 6 8.6037 -1.3994 -1.6098 15 6 10.0938 -1.1795 -1.6589 16 1 10.4942 -0.1783 -1.5977 17 6 10.9458 -2.2563 -1.7830 18 7 10.4582 -3.4754 -1.8580 19 14 12.7928 -1.9837 -1.8446 20 1 13.2368 -1.3171 -0.5940 21 1 13.4820 -3.2922 -1.9791 22 1 13.1279 -1.1252 -3.0090 23 6 4.1157 0.5832 -1.2510 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 3.7247 1.0744 2.1395 28 1 3.8039 -0.4647 1.2489 29 1 5.2021 0.6373 1.2489 30 1 3.5906 3.2429 0.8769 31 1 3.6316 3.2300 -0.9023 32 1 5.8369 3.8689 0.0575 33 1 5.9001 2.3151 0.9240 34 1 5.8048 2.7110 -2.1023 35 1 7.1884 2.1166 -1.1488 36 1 8.1396 0.5784 -2.3261 37 1 8.2194 0.4387 -0.5534 38 1 8.3578 -2.0292 -0.7549 39 1 8.2778 -1.8889 -2.5275 40 1 11.0576 -4.2331 -1.9449 41 1 3.8937 -0.4830 -1.2065 42 1 3.6552 1.0155 -2.1394 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412928848.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:07 Heat of formation + Delta-G solvation = -135.874622 kcal Electronic energy + Delta-G solvation = -23126.151259 eV Core-core repulsion = 19684.873421 eV Total energy + Delta-G solvation = -3441.277837 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.21529 -39.73584 -37.63005 -36.55621 -33.82675 -33.40721 -31.92809 -30.91602 -28.03184 -27.48869 -26.16992 -24.91893 -23.98487 -22.06618 -21.34914 -19.48545 -18.34839 -17.62398 -17.27548 -16.69552 -16.51818 -15.79848 -15.35405 -15.17084 -14.77649 -14.42491 -14.25005 -14.00329 -13.55936 -13.33296 -13.11747 -12.81979 -12.63800 -12.23582 -12.21166 -12.10053 -11.84675 -11.50024 -11.29236 -11.11462 -11.03194 -10.99146 -10.91110 -10.70092 -10.59784 -10.48179 -9.96214 -9.61571 -9.19374 -9.01375 -8.48936 -8.31354 -5.95978 -4.00567 1.94332 2.44742 3.17826 3.23182 3.34299 3.39336 3.40895 4.27311 4.41719 4.47362 4.53430 4.77066 4.85763 4.89516 4.93754 4.94429 5.16470 5.27339 5.30536 5.38905 5.41939 5.57452 5.58565 5.64240 5.69963 5.70752 5.80140 5.94582 5.98454 6.14034 6.19145 6.19640 6.21947 6.64173 6.88145 7.50786 7.69736 7.73948 7.85889 8.07006 8.37900 8.70589 9.07627 9.62959 11.14892 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.031937 B = 0.003536 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.508786 B = 7916.299990 C = 8470.713837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.352 6.352 3 C 0.476 3.524 4 O -0.508 6.508 5 C -0.065 4.065 6 C -0.140 4.140 7 C -0.097 4.097 8 C -0.137 4.137 9 C 0.105 3.895 10 N -0.622 5.622 11 C 0.514 3.486 12 O -0.529 6.529 13 C -0.128 4.128 14 C 0.037 3.963 15 C -0.528 4.528 16 H 0.055 0.945 17 C 0.059 3.941 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.126 3.874 24 H 0.102 0.898 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.261 0.739 41 H 0.105 0.895 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.616 12.977 4.677 21.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.267 6.267 3 C 0.318 3.682 4 O -0.395 6.395 5 C -0.068 4.068 6 C -0.197 4.197 7 C -0.135 4.135 8 C -0.175 4.175 9 C -0.018 4.018 10 N -0.358 5.358 11 C 0.305 3.695 12 O -0.404 6.404 13 C -0.168 4.168 14 C 0.000 4.000 15 C -0.566 4.566 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C 0.002 3.998 24 H 0.121 0.879 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.123 0.877 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.019 12.427 4.609 21.571 hybrid contribution 0.650 0.293 -0.027 0.713 sum -16.369 12.720 4.582 21.231 Atomic orbital electron populations 1.23288 0.76403 1.03863 1.02400 1.86566 1.23315 1.33214 1.83646 1.23636 0.91551 0.81316 0.71715 1.90645 1.67045 1.36422 1.45379 1.20963 0.86556 0.99316 0.99923 1.21872 1.02760 1.00886 0.94165 1.21455 0.96047 0.92376 1.03632 1.22027 0.94691 1.01556 0.99273 1.21772 1.00258 0.82202 0.97591 1.48246 1.05240 1.07149 1.75156 1.21628 0.90107 0.83565 0.74230 1.90670 1.78274 1.23024 1.48404 1.21896 0.88191 1.04338 1.02332 1.18906 0.93514 0.89087 0.98529 1.21175 0.91449 0.92921 1.51074 0.92673 1.25018 0.98785 0.95213 0.95311 1.69986 1.34962 0.98173 1.49666 0.86660 0.85477 0.77301 0.78531 1.20251 1.21302 1.20257 1.21382 0.81655 1.02642 0.94119 0.87936 0.91980 0.91893 0.92244 0.90986 0.90175 0.90799 0.90885 0.90028 0.90575 0.91493 0.88526 0.90205 0.90182 0.95810 0.95829 0.92889 0.87686 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.35 -4.06 10.40 -39.25 -0.41 -4.47 16 3 C 0.48 5.79 6.56 36.01 0.24 6.03 16 4 O -0.51 -6.99 15.73 -18.75 -0.29 -7.29 16 5 C -0.07 -0.74 0.71 -155.54 -0.11 -0.85 16 6 C -0.14 -1.58 7.92 37.16 0.29 -1.28 16 7 C -0.10 -0.95 4.01 -26.69 -0.11 -1.06 16 8 C -0.14 -1.21 5.74 -26.61 -0.15 -1.37 16 9 C 0.10 1.11 6.34 -3.71 -0.02 1.09 16 10 N -0.62 -8.81 2.41 -172.76 -0.42 -9.22 16 11 C 0.51 9.70 7.70 -10.98 -0.08 9.62 16 12 O -0.53 -12.20 15.40 5.56 0.09 -12.11 16 13 C -0.13 -2.52 3.98 -27.88 -0.11 -2.63 16 14 C 0.04 0.98 4.26 -27.88 -0.12 0.87 16 15 C -0.53 -14.76 9.11 -34.44 -0.31 -15.07 16 16 H 0.06 1.44 7.74 -52.48 -0.41 1.04 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 19 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.13 1.65 5.04 -3.71 -0.02 1.63 16 24 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 25 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 26 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.88 8.11 -51.93 -0.42 0.46 16 29 H 0.08 0.96 5.97 -51.93 -0.31 0.65 16 30 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16 31 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.71 6.34 -51.93 -0.33 0.38 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 1.01 5.93 -51.93 -0.31 0.70 16 36 H 0.08 1.44 7.94 -51.93 -0.41 1.03 16 37 H 0.08 1.43 7.69 -51.93 -0.40 1.03 16 38 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.10 1.60 7.00 -51.93 -0.36 1.23 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 339.87 15.07 5.12 5.12 Total: -1.00 -34.34 339.87 -6.46 -40.80 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -6.73 Total: -2.67 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 0.46 Total: -0.11 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.32 Total: -35.71 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.62 Total: -23.87 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.34 -6.46 -40.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412928848.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.076 kcal (2) G-P(sol) polarization free energy of solvation -34.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds