Wall clock time and date at job start Tue Mar 31 2020 05:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 117.00066 * 2 1 4 4 O 1.20824 * 119.99613 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00281 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.49185 * 60.06922 * 5 3 2 7 7 C 1.53036 * 109.49554 * 180.16140 * 5 3 2 8 8 C 1.53042 * 109.53740 * 181.32004 * 7 5 3 9 9 C 1.53625 * 109.24315 * 298.51425 * 8 7 5 10 10 N 1.46933 * 108.54354 * 54.85108 * 9 8 7 11 11 C 1.34777 * 120.62902 * 126.36782 * 10 9 8 12 12 O 1.21279 * 120.00166 * 179.72411 * 11 10 9 13 13 C 1.50706 * 119.99762 * 359.72617 * 11 10 9 14 14 C 1.53002 * 109.46925 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47300 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99822 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00339 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99769 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00300 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46692 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47025 * 120.00050 * 19 17 15 22 22 H 1.48500 * 109.46740 * 240.00408 * 19 17 15 23 23 C 1.46923 * 118.73771 * 306.10195 * 10 9 8 24 24 H 1.08994 * 109.47313 * 299.99791 * 1 2 3 25 25 H 1.09001 * 109.46777 * 60.00519 * 1 2 3 26 26 H 1.09003 * 109.46764 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47282 * 299.93050 * 6 5 3 28 28 H 1.08998 * 109.47737 * 59.93593 * 6 5 3 29 29 H 1.09008 * 109.46839 * 179.97438 * 6 5 3 30 30 H 1.08996 * 109.46562 * 301.33856 * 7 5 3 31 31 H 1.08999 * 109.46267 * 61.31753 * 7 5 3 32 32 H 1.09003 * 109.49658 * 58.58587 * 8 7 5 33 33 H 1.08996 * 109.50080 * 178.68934 * 8 7 5 34 34 H 1.09005 * 109.73975 * 295.11860 * 9 8 7 35 35 H 1.08997 * 109.67134 * 174.54731 * 9 8 7 36 36 H 1.09000 * 109.47318 * 299.99141 * 13 11 10 37 37 H 1.09000 * 109.47161 * 59.99772 * 13 11 10 38 38 H 1.09004 * 109.46930 * 299.99901 * 14 13 11 39 39 H 1.09004 * 109.47059 * 59.99503 * 14 13 11 40 40 H 0.97000 * 120.00540 * 179.97438 * 18 17 15 41 41 H 1.09007 * 109.58345 * 173.64477 * 23 10 9 42 42 H 1.09004 * 109.58281 * 293.92276 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.1143 0.5828 -1.2490 7 6 4.0008 2.7423 0.0045 8 6 5.5287 2.8238 -0.0281 9 6 6.0987 2.1477 1.2281 10 7 5.5691 0.7792 1.3033 11 6 6.4019 -0.2737 1.4231 12 8 5.9522 -1.3981 1.4893 13 6 7.8919 -0.0538 1.4750 14 6 8.6019 -1.4021 1.6126 15 6 10.0918 -1.1823 1.6650 16 1 10.4923 -0.1810 1.6065 17 6 10.9437 -2.2593 1.7888 18 7 10.4560 -3.4786 1.8605 19 14 12.7905 -1.9868 1.8545 20 1 13.0801 -0.5336 1.7559 21 1 13.3229 -2.5112 3.1378 22 1 13.4365 -2.6987 0.7226 23 6 4.1143 0.5809 1.2514 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 3.8065 -0.4629 -1.2497 28 1 3.7242 1.0769 -2.1388 29 1 5.2029 0.6405 -1.2484 30 1 3.5916 3.2446 -0.8720 31 1 3.6307 3.2283 0.9073 32 1 5.9011 2.3164 -0.9181 33 1 5.8370 3.8691 -0.0488 34 1 5.7976 2.7052 2.1150 35 1 7.1864 2.1157 1.1660 36 1 8.2188 0.4373 0.5584 37 1 8.1369 0.5745 2.3313 38 1 8.2749 -1.8930 2.5293 39 1 8.3568 -2.0309 0.7565 40 1 11.0552 -4.2364 1.9472 41 1 3.8923 -0.4853 1.2046 42 1 3.6549 1.0110 2.1414 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412928850.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:10 Heat of formation + Delta-G solvation = -135.941109 kcal Electronic energy + Delta-G solvation = -23125.479304 eV Core-core repulsion = 19684.198583 eV Total energy + Delta-G solvation = -3441.280721 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.21247 -39.73168 -37.62603 -36.55480 -33.82411 -33.40965 -31.90910 -30.91652 -28.03012 -27.48764 -26.16619 -24.91691 -23.98769 -22.06781 -21.35139 -19.48434 -18.35216 -17.62358 -17.27495 -16.69572 -16.51898 -15.80133 -15.35294 -15.17157 -14.76959 -14.41754 -14.24829 -14.00343 -13.55740 -13.33021 -13.11670 -12.81623 -12.63944 -12.23916 -12.21165 -12.10180 -11.84799 -11.50230 -11.29513 -11.11507 -11.02686 -10.98688 -10.94642 -10.70014 -10.56538 -10.48127 -9.97295 -9.61796 -9.18208 -9.00277 -8.48894 -8.32082 -5.96445 -4.00841 1.94372 2.44787 3.17853 3.23311 3.32314 3.39725 3.42719 4.27443 4.41710 4.47210 4.53574 4.76724 4.85620 4.89426 4.93720 4.94685 5.16441 5.27360 5.30239 5.38677 5.41973 5.57457 5.58660 5.64219 5.69960 5.70722 5.80064 5.94489 5.98437 6.14030 6.19159 6.19593 6.21978 6.64123 6.88110 7.50801 7.69799 7.74386 7.85646 8.06698 8.37727 8.70603 9.07776 9.62833 11.14493 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.031933 B = 0.003536 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.615260 B = 7916.625004 C = 8470.985046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.352 6.352 3 C 0.475 3.525 4 O -0.508 6.508 5 C -0.065 4.065 6 C -0.140 4.140 7 C -0.098 4.098 8 C -0.137 4.137 9 C 0.105 3.895 10 N -0.622 5.622 11 C 0.514 3.486 12 O -0.529 6.529 13 C -0.128 4.128 14 C 0.036 3.964 15 C -0.526 4.526 16 H 0.056 0.944 17 C 0.058 3.942 18 N -0.889 5.889 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.126 3.874 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.102 0.898 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.023 0.977 39 H 0.024 0.976 40 H 0.260 0.740 41 H 0.105 0.895 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.624 13.021 -4.669 21.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.267 6.267 3 C 0.318 3.682 4 O -0.395 6.395 5 C -0.067 4.067 6 C -0.197 4.197 7 C -0.135 4.135 8 C -0.175 4.175 9 C -0.018 4.018 10 N -0.358 5.358 11 C 0.305 3.695 12 O -0.404 6.404 13 C -0.168 4.168 14 C -0.001 4.001 15 C -0.564 4.564 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C 0.002 3.998 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.121 0.879 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.123 0.877 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.027 12.480 -4.605 21.608 hybrid contribution 0.647 0.264 0.036 0.700 sum -16.380 12.744 -4.569 21.251 Atomic orbital electron populations 1.23288 0.76406 1.03862 1.02398 1.86568 1.23314 1.33216 1.83650 1.23639 0.91556 0.81315 0.71714 1.90644 1.67048 1.36421 1.45376 1.20956 0.86548 0.99313 0.99907 1.21874 1.02761 1.00901 0.94149 1.21455 0.96062 0.92374 1.03626 1.22100 0.94675 1.01530 0.99214 1.21866 1.00276 0.82147 0.97546 1.48251 1.05267 1.07115 1.75186 1.21627 0.90107 0.83572 0.74228 1.90669 1.78267 1.23032 1.48409 1.21893 0.88193 1.04331 1.02336 1.18918 0.93564 0.89092 0.98541 1.21245 0.91443 0.92958 1.50795 0.92570 1.25024 0.98803 0.95220 0.95337 1.70006 1.34742 0.98150 1.49879 0.86546 0.85686 0.78199 0.77596 1.19745 1.21041 1.21028 1.21386 0.81667 1.02631 0.94129 0.91894 0.91981 0.87938 0.90995 0.92234 0.90166 0.90799 0.90893 0.90549 0.90063 0.91462 0.88524 0.90177 0.90209 0.95826 0.95797 0.93007 0.87688 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.35 -4.06 10.40 -39.27 -0.41 -4.47 16 3 C 0.48 5.79 6.56 36.01 0.24 6.02 16 4 O -0.51 -6.99 15.73 -18.75 -0.29 -7.29 16 5 C -0.07 -0.74 0.71 -155.55 -0.11 -0.85 16 6 C -0.14 -1.57 7.92 37.16 0.29 -1.28 16 7 C -0.10 -0.95 4.00 -26.69 -0.11 -1.06 16 8 C -0.14 -1.21 5.75 -26.39 -0.15 -1.36 16 9 C 0.10 1.11 6.37 -3.48 -0.02 1.09 16 10 N -0.62 -8.80 2.41 -172.50 -0.41 -9.22 16 11 C 0.51 9.69 7.70 -10.98 -0.08 9.61 16 12 O -0.53 -12.19 15.39 5.56 0.09 -12.11 16 13 C -0.13 -2.52 3.98 -27.88 -0.11 -2.63 16 14 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 15 C -0.53 -14.70 9.11 -34.44 -0.31 -15.01 16 16 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 19 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.13 1.65 5.04 -3.72 -0.02 1.63 16 24 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 25 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 26 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.88 8.12 -51.93 -0.42 0.45 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.96 5.97 -51.92 -0.31 0.65 16 30 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16 31 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 32 H 0.08 0.71 6.34 -51.93 -0.33 0.38 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.10 1.01 5.93 -51.93 -0.31 0.70 16 36 H 0.08 1.43 7.70 -51.93 -0.40 1.03 16 37 H 0.08 1.44 7.93 -51.93 -0.41 1.03 16 38 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 39 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.10 1.59 7.01 -51.92 -0.36 1.23 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 339.92 15.07 5.12 5.12 Total: -1.00 -34.37 339.92 -6.46 -40.83 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -6.73 Total: -2.75 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 0.46 Total: -0.09 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.32 Total: -35.68 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.62 Total: -23.86 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.37 -6.46 -40.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412928850.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.111 kcal (2) G-P(sol) polarization free energy of solvation -34.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds