Wall clock time and date at job start Tue Mar 31 2020 06:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46812 * 2 1 4 4 H 1.08997 * 110.01926 * 54.94133 * 3 2 1 5 5 C 1.53874 * 110.03633 * 293.54447 * 3 2 1 6 6 C 1.54258 * 106.60050 * 240.72146 * 5 3 2 7 7 C 1.54890 * 104.19612 * 336.38760 * 6 5 3 8 8 C 1.54266 * 110.02978 * 176.37931 * 3 2 1 9 9 H 1.09005 * 110.48829 * 24.21860 * 8 3 2 10 10 C 1.50703 * 110.48802 * 261.57699 * 8 3 2 11 11 O 1.21285 * 119.99873 * 359.97438 * 10 8 3 12 12 N 1.34777 * 119.99692 * 180.02562 * 10 8 3 13 13 C 1.37091 * 120.00491 * 359.97438 * 12 10 8 14 14 H 1.08001 * 120.00315 * 354.62756 * 13 12 10 15 15 C 1.38954 * 120.00149 * 174.62917 * 13 12 10 16 16 N 1.31411 * 119.99934 * 33.40781 * 15 13 12 17 17 Si 1.86796 * 119.99974 * 213.41015 * 15 13 12 18 18 H 1.48495 * 109.47453 * 84.99678 * 17 15 13 19 19 H 1.48500 * 109.47061 * 204.99873 * 17 15 13 20 20 H 1.48506 * 109.47474 * 324.99627 * 17 15 13 21 21 C 1.46504 * 119.99453 * 179.97438 * 12 10 8 22 22 C 1.50697 * 109.47414 * 93.61208 * 21 12 10 23 23 O 1.20824 * 119.99907 * 0.02562 * 22 21 12 24 24 O 1.34230 * 120.00249 * 179.97438 * 22 21 12 25 25 C 1.45198 * 117.00215 * 180.02562 * 24 22 21 26 26 H 1.08995 * 109.46777 * 299.99703 * 1 2 3 27 27 H 1.08994 * 109.46871 * 59.99777 * 1 2 3 28 28 H 1.09000 * 109.47160 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47171 * 240.00071 * 2 1 3 30 30 H 1.08996 * 109.47385 * 120.00176 * 2 1 3 31 31 H 1.09004 * 110.02971 * 0.02562 * 5 3 2 32 32 H 1.08997 * 110.02949 * 121.43015 * 5 3 2 33 33 H 1.09000 * 110.49033 * 95.06749 * 6 5 3 34 34 H 1.09005 * 110.48773 * 217.71269 * 6 5 3 35 35 H 1.09005 * 110.75731 * 279.63293 * 7 6 5 36 36 H 1.09001 * 110.91802 * 156.33740 * 7 6 5 37 37 H 0.96994 * 119.99716 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.46860 * 213.61300 * 21 12 10 39 39 H 1.08997 * 109.47422 * 333.60771 * 21 12 10 40 40 H 1.09000 * 109.46897 * 300.00521 * 25 24 22 41 41 H 1.08999 * 109.46922 * 59.99658 * 25 24 22 42 42 H 1.08991 * 109.47323 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6097 1.9904 0.8383 5 6 1.6712 2.1320 -1.3253 6 6 2.9998 2.5430 -1.9928 7 6 4.0020 2.6407 -0.8159 8 6 3.5798 1.4586 0.0915 9 1 3.9941 0.5228 -0.2837 10 6 4.0213 1.7002 1.5120 11 8 3.1947 1.8492 2.3870 12 7 5.3347 1.7519 1.8099 13 6 6.2691 1.5841 0.8209 14 1 5.9559 1.3246 -0.1796 15 6 7.6193 1.7477 1.1056 16 7 8.0863 1.4157 2.2882 17 14 8.7704 2.4397 -0.1926 18 1 8.7279 3.9235 -0.1517 19 1 10.1555 1.9766 0.0765 20 1 8.3431 1.9691 -1.5347 21 6 5.7638 1.9873 3.1908 22 6 5.9975 0.6659 3.8765 23 8 5.8239 -0.3666 3.2735 24 8 6.3995 0.6359 5.1569 25 6 6.6054 -0.6720 5.7527 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.1286 1.4391 -1.9683 32 1 1.0626 3.0149 -1.1300 33 1 3.3204 1.7823 -2.7047 34 1 2.8958 3.5092 -2.4865 35 1 3.8902 3.5895 -0.2911 36 1 5.0264 2.5127 -1.1655 37 1 9.0287 1.5303 2.4871 38 1 6.6882 2.5650 3.1905 39 1 4.9898 2.5407 3.7225 40 1 5.6723 -1.2347 5.7254 41 1 7.3705 -1.2099 5.1929 42 1 6.9276 -0.5534 6.7871 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449962257.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:57 Heat of formation + Delta-G solvation = -128.102711 kcal Electronic energy + Delta-G solvation = -24016.827572 eV Core-core repulsion = 20575.886750 eV Total energy + Delta-G solvation = -3440.940822 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.69271 -38.93488 -37.04438 -35.37132 -34.62462 -32.74991 -31.60580 -29.48919 -27.88141 -27.08775 -26.10596 -24.73624 -22.53308 -21.01777 -20.09864 -19.23757 -18.77244 -17.18977 -16.57729 -16.40477 -15.39090 -15.33492 -14.87528 -14.67649 -14.32068 -14.14489 -13.62350 -13.31148 -12.85187 -12.76622 -12.61179 -12.43125 -12.17038 -11.84237 -11.49257 -11.39102 -11.29904 -11.18869 -10.86613 -10.85365 -10.74258 -10.46400 -10.25444 -10.09238 -10.02306 -9.96116 -9.85813 -9.83960 -9.48978 -8.88463 -8.47103 -8.07353 -6.60289 -3.86780 3.07284 3.19958 3.21001 3.46609 3.65336 3.97227 4.08937 4.64244 4.91271 5.03565 5.15163 5.27990 5.51852 5.57217 5.68243 5.68789 5.76388 5.92799 5.96053 6.01823 6.06638 6.07729 6.11691 6.14960 6.21329 6.28462 6.33822 6.38458 6.42219 6.53629 6.62552 6.69884 6.76852 6.81068 6.84566 7.06185 7.41506 7.42666 7.57120 8.23749 8.96642 9.06167 9.39746 9.80735 10.48070 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014076 B = 0.007335 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.663854 B = 3816.577257 C = 5378.806419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.080 4.080 4 H 0.088 0.912 5 C -0.118 4.118 6 C -0.125 4.125 7 C -0.108 4.108 8 C -0.085 4.085 9 H 0.088 0.912 10 C 0.472 3.528 11 O -0.605 6.605 12 N -0.427 5.427 13 C -0.336 4.336 14 H 0.113 0.887 15 C 0.042 3.958 16 N -0.857 5.857 17 Si 0.910 3.090 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.269 1.269 21 C 0.141 3.859 22 C 0.482 3.518 23 O -0.506 6.506 24 O -0.373 6.373 25 C 0.042 3.958 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.273 0.727 38 H 0.133 0.867 39 H 0.085 0.915 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.085 1.069 -2.857 5.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.099 4.099 4 H 0.106 0.894 5 C -0.156 4.156 6 C -0.163 4.163 7 C -0.146 4.146 8 C -0.106 4.106 9 H 0.106 0.894 10 C 0.262 3.738 11 O -0.491 6.491 12 N -0.145 5.145 13 C -0.462 4.462 14 H 0.130 0.870 15 C -0.163 4.163 16 N -0.495 5.495 17 Si 0.736 3.264 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.193 1.193 21 C 0.015 3.985 22 C 0.324 3.676 23 O -0.391 6.391 24 O -0.291 6.291 25 C -0.052 4.052 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.150 0.850 39 H 0.103 0.897 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.331 0.777 -2.489 5.935 hybrid contribution 1.033 -0.224 -0.480 1.161 sum -4.298 0.553 -2.969 5.253 Atomic orbital electron populations 1.21779 0.96465 1.00781 1.01531 1.21562 0.95206 0.96763 1.01637 1.21697 0.94352 0.95960 0.97848 0.89367 1.22240 0.97246 0.99638 0.96466 1.22385 0.95576 1.00511 0.97826 1.22481 0.99457 0.97721 0.94950 1.21808 0.95161 1.00009 0.93626 0.89363 1.19984 0.81883 0.81484 0.90425 1.90503 1.52230 1.56694 1.49714 1.43577 1.04759 1.60880 1.05276 1.19733 0.86527 1.48914 0.91044 0.86973 1.25139 0.97509 0.96402 0.97264 1.70073 1.15596 1.40316 1.23481 0.86208 0.78988 0.79907 0.81313 1.20002 1.21204 1.19317 1.20996 1.02738 0.91520 0.83244 1.24234 0.71435 0.93389 0.78527 1.90518 1.48195 1.35729 1.64647 1.86481 1.79975 1.33292 1.29331 1.22945 1.01021 0.83963 0.97290 0.92812 0.93006 0.93459 0.92586 0.91936 0.92174 0.92411 0.91977 0.92227 0.91624 0.89970 0.91643 0.84969 0.89667 0.93180 0.92613 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.73 37.16 0.36 -1.62 16 2 C -0.11 -1.83 5.08 -26.73 -0.14 -1.96 16 3 C -0.08 -1.38 2.33 -89.50 -0.21 -1.59 16 4 H 0.09 1.72 6.85 -51.93 -0.36 1.37 16 5 C -0.12 -1.67 5.95 -25.62 -0.15 -1.82 16 6 C -0.13 -1.76 6.83 -25.08 -0.17 -1.93 16 7 C -0.11 -1.87 5.54 -24.74 -0.14 -2.01 16 8 C -0.08 -1.68 1.82 -90.11 -0.16 -1.84 16 9 H 0.09 1.80 7.44 -51.93 -0.39 1.41 16 10 C 0.47 11.33 7.02 -10.98 -0.08 11.26 16 11 O -0.60 -15.74 14.95 5.55 0.08 -15.66 16 12 N -0.43 -10.62 2.13 -116.10 -0.25 -10.87 16 13 C -0.34 -8.27 8.35 -14.93 -0.12 -8.39 16 14 H 0.11 2.63 5.00 -52.49 -0.26 2.37 16 15 C 0.04 1.03 4.91 -17.47 -0.09 0.94 16 16 N -0.86 -21.71 9.45 55.50 0.52 -21.19 16 17 Si 0.91 18.80 29.66 -169.99 -5.04 13.76 16 18 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 19 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 21 C 0.14 3.41 5.32 -5.19 -0.03 3.38 16 22 C 0.48 12.08 6.44 36.00 0.23 12.31 16 23 O -0.51 -14.08 16.13 -18.75 -0.30 -14.38 16 24 O -0.37 -8.17 10.57 -39.26 -0.41 -8.59 16 25 C 0.04 0.75 10.56 101.05 1.07 1.81 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.62 6.90 -51.93 -0.36 0.26 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.06 0.76 6.78 -51.93 -0.35 0.41 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 36 H 0.08 1.46 6.29 -51.93 -0.33 1.13 16 37 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 38 H 0.13 3.20 5.88 -51.93 -0.31 2.90 16 39 H 0.09 1.97 7.32 -51.93 -0.38 1.59 16 40 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 41 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 42 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 334.30 15.07 5.04 5.04 Total: -1.00 -29.88 334.30 -6.49 -36.37 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -6.51 Total: 6.98 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 0.38 Total: 8.54 kcal Atomic # 7 Polarization: -32.34 SS G_CDS: 0.28 Total: -32.06 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -0.63 Total: -38.63 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.04 Total: 13.76 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.88 -6.49 -36.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449962257.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.732 kcal (2) G-P(sol) polarization free energy of solvation -29.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds