Wall clock time and date at job start Tue Mar 31 2020 06:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46861 * 2 1 4 4 H 1.08997 * 110.05708 * 55.45243 * 3 2 1 5 5 C 1.54268 * 110.02956 * 294.03640 * 3 2 1 6 6 C 1.54891 * 104.19591 * 217.10683 * 5 3 2 7 7 C 1.54887 * 102.74639 * 37.94675 * 6 5 3 8 8 C 1.53880 * 110.03064 * 176.87443 * 3 2 1 9 9 H 1.08995 * 110.02865 * 238.56370 * 8 3 2 10 10 C 1.50696 * 110.07294 * 359.97317 * 8 3 2 11 11 O 1.21293 * 120.00026 * 85.42928 * 10 8 3 12 12 N 1.34772 * 120.00137 * 265.42832 * 10 8 3 13 13 C 1.37101 * 119.99902 * 0.02562 * 12 10 8 14 14 H 1.07997 * 119.99997 * 323.02202 * 13 12 10 15 15 C 1.38951 * 119.99759 * 143.01836 * 13 12 10 16 16 N 1.31412 * 119.99876 * 157.95636 * 15 13 12 17 17 Si 1.86796 * 120.00391 * 337.95784 * 15 13 12 18 18 H 1.48503 * 109.47461 * 93.52822 * 17 15 13 19 19 H 1.48503 * 109.47190 * 213.52900 * 17 15 13 20 20 H 1.48502 * 109.47148 * 333.52783 * 17 15 13 21 21 C 1.46504 * 120.00235 * 180.02562 * 12 10 8 22 22 C 1.50699 * 109.47136 * 85.11893 * 21 12 10 23 23 O 1.20831 * 119.99811 * 0.02562 * 22 21 12 24 24 O 1.34221 * 120.00035 * 180.02562 * 22 21 12 25 25 C 1.45208 * 117.00093 * 180.02562 * 24 22 21 26 26 H 1.09003 * 109.46752 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47494 * 300.00185 * 1 2 3 28 28 H 1.09004 * 109.46715 * 60.00753 * 1 2 3 29 29 H 1.08993 * 109.47672 * 239.99313 * 2 1 3 30 30 H 1.09000 * 109.47189 * 119.99389 * 2 1 3 31 31 H 1.08999 * 110.48605 * 98.42612 * 5 3 2 32 32 H 1.08999 * 110.48995 * 335.78561 * 5 3 2 33 33 H 1.09000 * 110.75734 * 279.62798 * 6 5 3 34 34 H 1.08998 * 110.75195 * 156.25801 * 6 5 3 35 35 H 1.08998 * 110.49019 * 80.73668 * 7 6 5 36 36 H 1.09002 * 110.48427 * 203.38094 * 7 6 5 37 37 H 0.96993 * 120.00279 * 180.02562 * 16 15 13 38 38 H 1.08996 * 109.47001 * 205.12226 * 21 12 10 39 39 H 1.08998 * 109.47100 * 325.12550 * 21 12 10 40 40 H 1.08999 * 109.47170 * 179.97438 * 25 24 22 41 41 H 1.09001 * 109.46992 * 300.00550 * 25 24 22 42 42 H 1.09003 * 109.46559 * 60.00027 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6171 1.9885 0.8433 5 6 1.6595 2.1375 -1.3237 6 6 2.8783 3.0379 -1.6440 7 6 4.0762 2.1624 -1.1997 8 6 3.5767 1.4584 0.0788 9 1 3.8995 2.0120 0.9604 10 6 4.1063 0.0486 0.1324 11 8 4.2951 -0.5678 -0.8950 12 7 4.3703 -0.5273 1.3219 13 6 4.1565 0.1692 2.4833 14 1 4.3625 1.2286 2.5233 15 6 3.6748 -0.4879 3.6088 16 7 3.8687 0.0257 4.8028 17 14 2.7515 -2.1013 3.4249 18 1 3.7010 -3.2342 3.5677 19 1 1.7063 -2.1961 4.4755 20 1 2.1131 -2.1564 2.0852 21 6 4.8858 -1.8977 1.3740 22 6 6.3845 -1.8770 1.2174 23 8 6.9628 -0.8253 1.0772 24 8 7.0770 -3.0267 1.2337 25 6 8.5175 -2.9309 1.0780 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.8934 -0.5139 -0.8898 30 1 1.8934 -0.5137 0.8900 31 1 0.7622 2.7423 -1.1928 32 1 1.5119 1.4003 -2.1129 33 1 2.8392 3.9612 -1.0659 34 1 2.9309 3.2514 -2.7116 35 1 4.3190 1.4292 -1.9689 36 1 4.9427 2.7854 -0.9782 37 1 3.5327 -0.4332 5.5885 38 1 4.6268 -2.3471 2.3327 39 1 4.4444 -2.4829 0.5673 40 1 8.9535 -3.9294 1.1096 41 1 8.7492 -2.4629 0.1212 42 1 8.9310 -2.3284 1.8867 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449962258.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:01 Heat of formation + Delta-G solvation = -122.367992 kcal Electronic energy + Delta-G solvation = -24366.201507 eV Core-core repulsion = 20925.509361 eV Total energy + Delta-G solvation = -3440.692146 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.18592 -39.38803 -37.05637 -35.77660 -34.83537 -32.64548 -32.03462 -29.73804 -28.14578 -27.11938 -26.38744 -24.85766 -22.42277 -21.32247 -20.23514 -19.94854 -18.49786 -17.39633 -16.93997 -16.40584 -15.83512 -15.63461 -15.33157 -15.00319 -14.52772 -14.13154 -13.74837 -13.48300 -13.18263 -12.96285 -12.82650 -12.61637 -12.31679 -11.93316 -11.82539 -11.64715 -11.39410 -11.21941 -11.02970 -10.74674 -10.62667 -10.51795 -10.34244 -10.26205 -10.17721 -10.10492 -9.94604 -9.79692 -9.66388 -9.27928 -8.61482 -7.95859 -6.55513 -4.15643 2.86540 2.94268 3.02296 3.16031 3.18630 3.76506 4.00518 4.26964 4.84203 5.03844 5.12799 5.23697 5.37144 5.44882 5.46135 5.60489 5.68570 5.69801 5.76109 5.78990 5.84449 6.02304 6.03885 6.06413 6.09303 6.13890 6.21462 6.30315 6.37202 6.44274 6.52229 6.63186 6.71413 6.84416 6.86273 6.94753 7.01813 7.16068 7.97389 8.16118 8.40334 8.86499 9.22768 9.55087 10.55052 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014459 B = 0.008111 C = 0.006262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.024871 B = 3451.408701 C = 4470.489600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C -0.065 4.065 4 H 0.076 0.924 5 C -0.117 4.117 6 C -0.122 4.122 7 C -0.114 4.114 8 C -0.093 4.093 9 H 0.098 0.902 10 C 0.513 3.487 11 O -0.591 6.591 12 N -0.452 5.452 13 C -0.338 4.338 14 H 0.108 0.892 15 C 0.067 3.933 16 N -0.853 5.853 17 Si 0.855 3.145 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.250 1.250 21 C 0.106 3.894 22 C 0.449 3.551 23 O -0.490 6.490 24 O -0.370 6.370 25 C 0.037 3.963 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.276 0.724 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.058 0.942 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.799 -1.202 -6.673 7.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C -0.084 4.084 4 H 0.094 0.906 5 C -0.154 4.154 6 C -0.160 4.160 7 C -0.152 4.152 8 C -0.114 4.114 9 H 0.116 0.884 10 C 0.304 3.696 11 O -0.475 6.475 12 N -0.173 5.173 13 C -0.465 4.465 14 H 0.126 0.874 15 C -0.141 4.141 16 N -0.487 5.487 17 Si 0.681 3.319 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.174 1.174 21 C -0.019 4.019 22 C 0.290 3.710 23 O -0.374 6.374 24 O -0.287 6.287 25 C -0.058 4.058 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.112 0.888 41 H 0.076 0.924 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.520 -1.182 -6.987 7.248 hybrid contribution -0.088 -0.807 0.443 0.925 sum -1.608 -1.989 -6.544 7.027 Atomic orbital electron populations 1.21752 0.96656 1.00802 1.01147 1.21910 0.95123 0.96638 1.03526 1.21526 0.93137 0.96278 0.97432 0.90571 1.22455 0.97275 0.98205 0.97499 1.22460 0.95322 0.98029 1.00150 1.22359 0.97160 0.98365 0.97280 1.21782 0.95816 0.94003 0.99844 0.88387 1.20262 0.77933 0.88930 0.82511 1.90519 1.57373 1.65469 1.34104 1.43468 1.55525 1.11489 1.06806 1.19048 1.44871 0.95777 0.86784 0.87415 1.25322 0.95946 0.98040 0.94781 1.69762 1.40948 1.40276 0.97763 0.87343 0.81034 0.83675 0.79810 1.19823 1.20781 1.17378 1.21412 0.86289 0.89660 1.04552 1.24794 0.92062 0.81681 0.72490 1.90608 1.70970 1.32135 1.43735 1.86525 1.21608 1.36405 1.84189 1.23132 0.77859 1.02834 1.01945 0.93531 0.92990 0.93187 0.91439 0.90358 0.92212 0.91677 0.91814 0.92103 0.90210 0.92167 0.91346 0.87481 0.87416 0.88754 0.92355 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.75 37.16 0.36 -1.85 16 2 C -0.13 -2.47 4.11 -26.73 -0.11 -2.58 16 3 C -0.06 -1.13 2.95 -89.50 -0.26 -1.39 16 4 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 5 C -0.12 -1.70 5.44 -25.07 -0.14 -1.84 16 6 C -0.12 -1.73 6.91 -24.74 -0.17 -1.90 16 7 C -0.11 -1.99 6.31 -25.07 -0.16 -2.15 16 8 C -0.09 -1.85 2.75 -90.65 -0.25 -2.10 16 9 H 0.10 2.04 6.12 -51.93 -0.32 1.72 16 10 C 0.51 11.77 4.34 -10.99 -0.05 11.72 16 11 O -0.59 -14.42 14.59 5.55 0.08 -14.34 16 12 N -0.45 -10.79 1.29 -116.10 -0.15 -10.94 16 13 C -0.34 -8.60 8.93 -14.93 -0.13 -8.73 16 14 H 0.11 2.92 6.51 -52.49 -0.34 2.58 16 15 C 0.07 1.70 5.28 -17.47 -0.09 1.61 16 16 N -0.85 -22.93 13.96 55.50 0.77 -22.15 16 17 Si 0.85 18.93 24.61 -169.99 -4.18 14.75 16 18 H -0.27 -5.78 6.59 56.52 0.37 -5.40 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.25 -5.38 5.93 56.52 0.34 -5.04 16 21 C 0.11 2.38 4.59 -5.19 -0.02 2.36 16 22 C 0.45 10.07 7.99 36.01 0.29 10.35 16 23 O -0.49 -12.22 16.07 -18.75 -0.30 -12.52 16 24 O -0.37 -7.03 10.57 -39.23 -0.41 -7.45 16 25 C 0.04 0.54 10.56 101.05 1.07 1.60 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.66 7.44 -51.93 -0.39 0.28 16 29 H 0.07 1.32 6.99 -51.93 -0.36 0.96 16 30 H 0.08 1.65 5.15 -51.93 -0.27 1.39 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.96 7.79 -51.93 -0.40 0.56 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.53 6.90 -51.93 -0.36 1.17 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.11 2.38 3.37 -51.93 -0.18 2.20 16 39 H 0.11 2.24 7.57 -51.93 -0.39 1.85 16 40 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 42 H 0.06 0.88 8.13 -51.93 -0.42 0.45 16 LS Contribution 328.19 15.07 4.95 4.95 Total: -1.00 -29.64 328.19 -5.38 -35.02 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -6.46 Total: 7.60 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 0.33 Total: 5.09 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.62 Total: -33.09 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.64 Total: -34.32 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -4.18 Total: 14.75 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.64 -5.38 -35.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449962258.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.349 kcal (2) G-P(sol) polarization free energy of solvation -29.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds