Wall clock time and date at job start Tue Mar 31 2020 06:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47205 * 2 1 4 4 H 1.09004 * 110.01790 * 306.39199 * 3 2 1 5 5 C 1.54264 * 110.07378 * 67.80881 * 3 2 1 6 6 C 1.54897 * 104.19306 * 142.91894 * 5 3 2 7 7 C 1.55010 * 102.75506 * 322.04288 * 6 5 3 8 8 C 1.53876 * 110.03277 * 185.00009 * 3 2 1 9 9 H 1.09001 * 110.03481 * 0.02562 * 8 3 2 10 10 C 1.50706 * 110.03074 * 121.37911 * 8 3 2 11 11 O 1.21290 * 119.99862 * 14.89055 * 10 8 3 12 12 N 1.34776 * 120.00118 * 194.88864 * 10 8 3 13 13 C 1.37094 * 120.00081 * 185.75927 * 12 10 8 14 14 H 1.08000 * 119.99891 * 219.15803 * 13 12 10 15 15 C 1.38947 * 119.99821 * 39.16496 * 13 12 10 16 16 N 1.31412 * 120.00258 * 1.90662 * 15 13 12 17 17 Si 1.86804 * 119.99792 * 181.90085 * 15 13 12 18 18 H 1.48503 * 109.47036 * 60.00274 * 17 15 13 19 19 H 1.48500 * 109.47121 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47332 * 299.99966 * 17 15 13 21 21 C 1.46503 * 119.99916 * 5.76340 * 12 10 8 22 22 C 1.50694 * 109.47714 * 90.96129 * 21 12 10 23 23 O 1.20832 * 119.99486 * 359.97438 * 22 21 12 24 24 O 1.34222 * 120.00603 * 180.02562 * 22 21 12 25 25 C 1.45198 * 117.00426 * 180.02562 * 24 22 21 26 26 H 1.09000 * 109.47131 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47130 * 300.00081 * 1 2 3 28 28 H 1.09000 * 109.47205 * 59.99976 * 1 2 3 29 29 H 1.09000 * 109.47130 * 239.99919 * 2 1 3 30 30 H 1.09002 * 109.47497 * 119.99572 * 2 1 3 31 31 H 1.09001 * 110.48433 * 261.59682 * 5 3 2 32 32 H 1.08995 * 110.48515 * 24.10829 * 5 3 2 33 33 H 1.08997 * 110.75728 * 80.37342 * 6 5 3 34 34 H 1.09000 * 110.74847 * 203.56205 * 6 5 3 35 35 H 1.08998 * 110.50934 * 279.29967 * 7 6 5 36 36 H 1.09003 * 110.52323 * 156.61732 * 7 6 5 37 37 H 0.96997 * 119.99598 * 181.91191 * 16 15 13 38 38 H 1.09007 * 109.46803 * 330.95588 * 21 12 10 39 39 H 1.08997 * 109.47212 * 210.96558 * 21 12 10 40 40 H 1.09003 * 109.46747 * 300.00079 * 25 24 22 41 41 H 1.09000 * 109.46858 * 59.99369 * 25 24 22 42 42 H 1.09003 * 109.47706 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9969 -0.8244 5 6 1.7005 2.1242 1.3416 6 6 2.9289 3.0216 1.6331 7 6 4.1135 2.1500 1.1433 8 6 3.5735 1.4594 -0.1260 9 1 3.9543 0.4400 -0.1876 10 6 3.9823 2.2371 -1.3505 11 8 3.1799 2.9554 -1.9085 12 7 5.2394 2.1345 -1.8254 13 6 5.6461 2.9292 -2.8658 14 1 6.2845 2.5242 -3.6371 15 6 5.2372 4.2556 -2.9279 16 7 4.4914 4.7588 -1.9700 17 14 5.7477 5.3238 -4.3729 18 1 5.2331 4.7304 -5.6332 19 1 5.1868 6.6882 -4.2024 20 1 7.2294 5.4021 -4.4315 21 6 6.1712 1.1735 -1.2299 22 6 6.0778 -0.1386 -1.9650 23 8 5.3111 -0.2590 -2.8911 24 8 6.8455 -1.1740 -1.5904 25 6 6.7031 -2.4069 -2.3440 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.7997 2.7302 1.2444 32 1 1.5749 1.3790 2.1270 33 1 2.8720 3.9505 1.0657 34 1 3.0125 3.2270 2.7004 35 1 4.3795 1.4089 1.8970 36 1 4.9732 2.7749 0.9013 37 1 4.1829 5.6767 -2.0271 38 1 5.9155 1.0216 -0.1812 39 1 7.1878 1.5597 -1.3036 40 1 5.6753 -2.7620 -2.2687 41 1 6.9485 -2.2236 -3.3901 42 1 7.3788 -3.1604 -1.9392 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449962259.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:04 Heat of formation + Delta-G solvation = -114.822750 kcal Electronic energy + Delta-G solvation = -24252.927199 eV Core-core repulsion = 20812.562239 eV Total energy + Delta-G solvation = -3440.364960 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.03512 -39.03864 -36.82772 -35.82245 -33.85509 -32.73476 -31.82003 -28.61435 -28.45545 -27.07651 -26.29148 -24.49198 -22.46932 -21.07772 -20.37980 -19.72744 -18.29582 -17.13140 -16.66955 -16.28818 -15.90623 -15.33362 -14.95779 -14.69717 -14.25404 -14.10503 -13.60813 -13.31871 -13.05788 -12.91243 -12.45491 -12.33925 -12.05524 -11.69820 -11.60603 -11.47922 -11.15377 -11.04060 -10.93869 -10.63104 -10.50362 -10.46401 -10.41718 -10.20755 -10.14448 -9.99555 -9.94523 -9.92750 -9.77581 -8.85390 -7.85129 -7.09478 -5.89967 -3.82242 2.80359 3.10385 3.34730 3.39349 3.41687 4.29751 4.54166 4.88647 5.09966 5.22343 5.26200 5.29895 5.36112 5.36797 5.46784 5.53843 5.61455 5.69079 5.72087 5.80119 5.92291 6.05480 6.07108 6.11835 6.13904 6.15868 6.24507 6.30358 6.33650 6.48407 6.49752 6.62129 6.65566 6.81694 6.85041 6.94369 7.14756 7.65647 8.25376 8.38026 9.10883 9.22201 9.69851 10.42690 11.06334 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.011152 B = 0.008646 C = 0.005748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.210849 B = 3237.743224 C = 4869.810561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.081 4.081 4 H 0.095 0.905 5 C -0.112 4.112 6 C -0.119 4.119 7 C -0.110 4.110 8 C -0.106 4.106 9 H 0.065 0.935 10 C 0.482 3.518 11 O -0.491 6.491 12 N -0.448 5.448 13 C -0.332 4.332 14 H 0.075 0.925 15 C 0.047 3.953 16 N -0.815 5.815 17 Si 0.916 3.084 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.278 1.278 21 C 0.118 3.882 22 C 0.430 3.570 23 O -0.488 6.488 24 O -0.371 6.371 25 C 0.036 3.964 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.260 0.740 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.744 -9.647 7.702 12.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.100 4.100 4 H 0.113 0.887 5 C -0.149 4.149 6 C -0.156 4.156 7 C -0.147 4.147 8 C -0.128 4.128 9 H 0.083 0.917 10 C 0.269 3.731 11 O -0.364 6.364 12 N -0.171 5.171 13 C -0.459 4.459 14 H 0.093 0.907 15 C -0.162 4.162 16 N -0.450 5.450 17 Si 0.744 3.256 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.203 1.203 21 C -0.010 4.010 22 C 0.270 3.730 23 O -0.373 6.373 24 O -0.288 6.288 25 C -0.059 4.059 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.118 0.882 39 H 0.128 0.872 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.045 -9.128 7.164 11.604 hybrid contribution 0.301 0.192 -0.928 0.994 sum 0.256 -8.936 6.237 10.900 Atomic orbital electron populations 1.21756 0.96299 1.00695 1.01831 1.21630 0.95532 0.96962 1.01154 1.21762 0.94059 0.95253 0.98929 0.88724 1.22361 0.97949 0.98045 0.96564 1.22437 0.94390 0.99297 0.99486 1.22289 0.98823 0.98319 0.95313 1.21940 0.96360 0.98690 0.95799 0.91686 1.19596 0.82010 0.85068 0.86449 1.90491 1.48932 1.37310 1.59679 1.43030 1.08029 1.33081 1.32952 1.18989 1.34118 0.90630 1.02205 0.90676 1.25212 0.96661 0.96799 0.97557 1.70063 1.29488 1.14061 1.31418 0.86205 0.78260 0.79129 0.82054 1.20384 1.21205 1.20343 1.21053 0.98736 0.84805 0.96375 1.25575 0.77391 0.86393 0.83675 1.90669 1.36075 1.82726 1.27829 1.86540 1.62085 1.21708 1.58443 1.23114 1.02277 0.84014 0.96481 0.93502 0.92867 0.92717 0.92408 0.92666 0.92383 0.92532 0.90513 0.92660 0.92404 0.90873 0.92997 0.88232 0.87245 0.92443 0.92378 0.88802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.77 37.15 0.36 -1.65 16 2 C -0.12 -1.79 5.06 -26.73 -0.14 -1.93 16 3 C -0.08 -1.50 2.49 -89.50 -0.22 -1.72 16 4 H 0.09 2.10 6.51 -51.93 -0.34 1.76 16 5 C -0.11 -1.77 5.54 -25.07 -0.14 -1.91 16 6 C -0.12 -2.01 6.91 -24.67 -0.17 -2.18 16 7 C -0.11 -1.91 5.37 -25.01 -0.13 -2.04 16 8 C -0.11 -2.10 2.01 -90.65 -0.18 -2.28 16 9 H 0.06 1.22 6.58 -51.93 -0.34 0.88 16 10 C 0.48 12.25 5.88 -10.98 -0.06 12.18 16 11 O -0.49 -14.59 12.26 5.55 0.07 -14.52 16 12 N -0.45 -11.23 2.07 -116.09 -0.24 -11.47 16 13 C -0.33 -9.23 9.34 -14.94 -0.14 -9.37 16 14 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 15 C 0.05 1.33 4.91 -17.47 -0.09 1.24 16 16 N -0.81 -23.75 10.24 55.50 0.57 -23.18 16 17 Si 0.92 22.00 29.55 -169.99 -5.02 16.98 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.12 2.30 5.62 -5.20 -0.03 2.27 16 22 C 0.43 8.37 7.86 36.00 0.28 8.65 16 23 O -0.49 -11.37 16.18 -18.76 -0.30 -11.67 16 24 O -0.37 -5.91 10.56 -39.24 -0.41 -6.33 16 25 C 0.04 0.45 10.56 101.05 1.07 1.51 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.66 7.51 -51.93 -0.39 0.27 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.77 8.01 -51.93 -0.42 0.35 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.78 7.76 -51.93 -0.40 0.38 16 33 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 1.41 7.69 -51.93 -0.40 1.01 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.10 1.67 5.53 -51.92 -0.29 1.38 16 39 H 0.11 1.94 8.05 -51.93 -0.42 1.53 16 40 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 41 H 0.06 0.75 8.13 -51.93 -0.42 0.32 16 42 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 338.67 15.07 5.10 5.10 Total: -1.00 -33.85 338.67 -6.60 -40.45 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.77 Total: 1.86 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 0.41 Total: 2.78 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.33 Total: -34.65 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.65 Total: -32.52 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.85 -6.60 -40.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449962259.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.375 kcal (2) G-P(sol) polarization free energy of solvation -33.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds