Wall clock time and date at job start Tue Mar 31 2020 06:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47280 * 2 1 4 4 H 1.09001 * 110.01255 * 306.36487 * 3 2 1 5 5 C 1.54258 * 110.07141 * 67.78337 * 3 2 1 6 6 C 1.54892 * 104.19390 * 142.91977 * 5 3 2 7 7 C 1.54888 * 102.75046 * 322.05702 * 6 5 3 8 8 C 1.53873 * 110.03317 * 184.97926 * 3 2 1 9 9 H 1.08996 * 110.03769 * 121.38173 * 8 3 2 10 10 C 1.50702 * 110.07085 * 359.96655 * 8 3 2 11 11 O 1.21287 * 120.00294 * 280.33438 * 10 8 3 12 12 N 1.34776 * 119.99646 * 100.34190 * 10 8 3 13 13 C 1.37097 * 120.00066 * 359.97438 * 12 10 8 14 14 H 1.07998 * 120.00507 * 24.84703 * 13 12 10 15 15 C 1.38953 * 119.99694 * 204.84711 * 13 12 10 16 16 N 1.31409 * 120.00201 * 1.44608 * 15 13 12 17 17 Si 1.86804 * 119.99823 * 181.44666 * 15 13 12 18 18 H 1.48508 * 109.46721 * 60.00065 * 17 15 13 19 19 H 1.48497 * 109.47001 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47162 * 300.00188 * 17 15 13 21 21 C 1.46504 * 119.99639 * 179.97438 * 12 10 8 22 22 C 1.50700 * 109.47232 * 83.94063 * 21 12 10 23 23 O 1.20826 * 120.00000 * 359.97438 * 22 21 12 24 24 O 1.34231 * 120.00175 * 179.97438 * 22 21 12 25 25 C 1.45193 * 116.99679 * 179.97438 * 24 22 21 26 26 H 1.08996 * 109.47105 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47035 * 300.00378 * 1 2 3 28 28 H 1.09001 * 109.46695 * 60.00408 * 1 2 3 29 29 H 1.09000 * 109.47364 * 240.00053 * 2 1 3 30 30 H 1.08998 * 109.47111 * 119.99318 * 2 1 3 31 31 H 1.09008 * 110.48414 * 261.59487 * 5 3 2 32 32 H 1.08995 * 110.49222 * 24.24291 * 5 3 2 33 33 H 1.08998 * 110.75876 * 203.73789 * 6 5 3 34 34 H 1.09000 * 110.75488 * 80.36935 * 6 5 3 35 35 H 1.09004 * 110.48343 * 279.26873 * 7 6 5 36 36 H 1.08996 * 110.48787 * 156.62008 * 7 6 5 37 37 H 0.97001 * 120.00043 * 179.97438 * 16 15 13 38 38 H 1.09006 * 109.46772 * 203.93354 * 21 12 10 39 39 H 1.09000 * 109.47248 * 323.93318 * 21 12 10 40 40 H 1.09004 * 109.47034 * 180.02562 * 25 24 22 41 41 H 1.09003 * 109.47431 * 299.99749 * 25 24 22 42 42 H 1.09004 * 109.47331 * 60.00392 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5918 1.9967 -0.8247 5 6 1.7000 2.1243 1.3413 6 6 2.9282 3.0218 1.6333 7 6 4.1120 2.1509 1.1441 8 6 3.5735 1.4594 -0.1255 9 1 3.8696 2.0218 -1.0110 10 6 4.1011 0.0502 -0.2089 11 8 4.2222 -0.6127 0.7995 12 7 4.4386 -0.4732 -1.4041 13 6 4.3014 0.2760 -2.5440 14 1 4.3195 1.3544 -2.4869 15 6 4.1392 -0.3520 -3.7728 16 7 4.0887 -1.6634 -3.8389 17 14 3.9928 0.6680 -5.3309 18 1 5.2207 1.4850 -5.5048 19 1 3.8292 -0.2337 -6.4994 20 1 2.8129 1.5637 -5.2272 21 6 4.9521 -1.8429 -1.4852 22 6 3.7976 -2.8107 -1.5240 23 8 2.6623 -2.3987 -1.4873 24 8 4.0303 -4.1306 -1.5995 25 6 2.8706 -5.0035 -1.6325 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 0.7992 2.7304 1.2437 32 1 1.5764 1.3794 2.1274 33 1 3.0132 3.2248 2.7008 34 1 2.8715 3.9506 1.0657 35 1 4.3778 1.4102 1.8983 36 1 4.9714 2.7763 0.9026 37 1 3.9751 -2.1018 -4.6967 38 1 5.5497 -1.9539 -2.3900 39 1 5.5715 -2.0510 -0.6128 40 1 3.1987 -6.0413 -1.6932 41 1 2.2827 -4.8612 -0.7257 42 1 2.2599 -4.7637 -2.5029 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449962260.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:08 Heat of formation + Delta-G solvation = -126.918145 kcal Electronic energy + Delta-G solvation = -24741.914785 eV Core-core repulsion = 21301.025329 eV Total energy + Delta-G solvation = -3440.889455 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.79424 -38.85912 -36.81244 -35.24468 -34.51366 -32.43776 -31.49571 -29.43704 -27.82268 -27.00502 -26.11379 -24.58272 -22.17662 -20.99138 -19.96229 -19.68953 -18.64996 -16.66343 -16.41403 -16.26522 -15.48656 -15.26126 -14.99230 -14.56731 -14.25502 -13.86743 -13.60157 -13.44813 -12.80458 -12.62121 -12.39811 -12.34101 -11.83261 -11.51594 -11.33521 -11.25174 -11.22103 -10.92966 -10.89902 -10.68385 -10.58190 -10.49098 -10.36810 -10.09727 -10.03220 -9.79824 -9.72420 -9.60414 -9.39852 -8.88461 -8.39331 -7.84341 -6.43112 -4.04555 3.11166 3.18226 3.19165 3.56333 3.77285 4.06154 4.11294 4.71065 4.99388 5.11740 5.24364 5.35645 5.72555 5.74238 5.80689 5.92700 5.96374 5.98251 6.06327 6.09776 6.11693 6.16160 6.20664 6.28778 6.30571 6.35131 6.44752 6.54856 6.58018 6.63385 6.77364 6.83907 6.88709 6.94751 7.18638 7.33936 7.38494 7.64835 7.72357 8.28248 9.02340 9.19889 9.42824 9.82760 10.62525 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.013545 B = 0.008453 C = 0.006628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.676264 B = 3311.737904 C = 4223.484867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.134 4.134 3 C -0.066 4.066 4 H 0.067 0.933 5 C -0.117 4.117 6 C -0.122 4.122 7 C -0.113 4.113 8 C -0.098 4.098 9 H 0.090 0.910 10 C 0.492 3.508 11 O -0.599 6.599 12 N -0.436 5.436 13 C -0.326 4.326 14 H 0.101 0.899 15 C 0.040 3.960 16 N -0.884 5.884 17 Si 0.928 3.072 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.157 3.843 22 C 0.489 3.511 23 O -0.502 6.502 24 O -0.376 6.376 25 C 0.045 3.955 26 H 0.045 0.955 27 H 0.041 0.959 28 H 0.045 0.955 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.272 0.728 38 H 0.130 0.870 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.049 0.951 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.506 2.461 3.395 4.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.172 4.172 3 C -0.085 4.085 4 H 0.086 0.914 5 C -0.154 4.154 6 C -0.160 4.160 7 C -0.151 4.151 8 C -0.119 4.119 9 H 0.108 0.892 10 C 0.282 3.718 11 O -0.484 6.484 12 N -0.155 5.155 13 C -0.454 4.454 14 H 0.119 0.881 15 C -0.163 4.163 16 N -0.524 5.524 17 Si 0.755 3.245 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.198 1.198 21 C 0.032 3.968 22 C 0.330 3.670 23 O -0.387 6.387 24 O -0.293 6.293 25 C -0.050 4.050 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.122 0.878 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.148 0.852 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.067 0.933 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.826 2.082 3.709 4.628 hybrid contribution -0.469 0.271 -1.195 1.312 sum -2.295 2.354 2.514 4.138 Atomic orbital electron populations 1.21699 0.97448 1.00512 1.00143 1.21957 0.94365 0.95600 1.05230 1.21535 0.93228 0.97065 0.96652 0.91414 1.22455 0.97021 0.98166 0.97775 1.22459 0.95573 0.97949 0.99999 1.22343 0.96996 0.98337 0.97391 1.21830 0.95970 0.94856 0.99233 0.89188 1.20075 0.79370 0.89163 0.83226 1.90507 1.58752 1.63271 1.35889 1.43363 1.55813 1.10201 1.06123 1.19574 1.50303 0.91447 0.84038 0.88150 1.25252 0.95690 0.95758 0.99639 1.69620 1.48405 1.07850 1.26522 0.85972 0.78924 0.79165 0.80464 1.19881 1.20939 1.19834 1.20508 0.91939 0.80959 1.03432 1.24009 0.92112 0.80587 0.70260 1.90437 1.24560 1.77896 1.45841 1.86465 1.37618 1.19699 1.85543 1.22900 0.88213 0.92441 1.01455 0.93633 0.93996 0.93627 0.87806 0.91836 0.92485 0.91700 0.92195 0.92011 0.90281 0.92328 0.91714 0.85197 0.90949 0.89781 0.93251 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.77 37.16 0.36 -2.17 16 2 C -0.13 -2.85 4.12 -26.73 -0.11 -2.96 16 3 C -0.07 -1.24 2.93 -89.50 -0.26 -1.50 16 4 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 5 C -0.12 -1.84 5.53 -25.07 -0.14 -1.98 16 6 C -0.12 -1.78 6.91 -24.74 -0.17 -1.95 16 7 C -0.11 -1.95 6.32 -25.07 -0.16 -2.10 16 8 C -0.10 -1.96 2.85 -90.65 -0.26 -2.22 16 9 H 0.09 1.78 5.77 -51.93 -0.30 1.48 16 10 C 0.49 11.63 4.22 -10.98 -0.05 11.59 16 11 O -0.60 -15.38 14.45 5.55 0.08 -15.30 16 12 N -0.44 -10.69 1.99 -116.09 -0.23 -10.92 16 13 C -0.33 -7.96 9.06 -14.93 -0.14 -8.09 16 14 H 0.10 2.31 5.80 -52.49 -0.30 2.00 16 15 C 0.04 0.97 5.27 -17.47 -0.09 0.88 16 16 N -0.88 -22.41 8.65 55.50 0.48 -21.93 16 17 Si 0.93 19.31 29.55 -169.99 -5.02 14.29 16 18 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 C 0.16 3.77 5.13 -5.19 -0.03 3.74 16 22 C 0.49 11.96 6.03 36.01 0.22 12.18 16 23 O -0.50 -13.29 13.36 -18.75 -0.25 -13.55 16 24 O -0.38 -8.17 10.57 -39.26 -0.41 -8.58 16 25 C 0.04 0.78 10.55 101.05 1.07 1.85 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.04 0.66 7.51 -51.93 -0.39 0.27 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.10 2.61 4.49 -51.93 -0.23 2.38 16 30 H 0.06 1.48 6.82 -51.93 -0.35 1.12 16 31 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 32 H 0.06 1.07 7.76 -51.93 -0.40 0.67 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.51 7.01 -51.93 -0.36 1.15 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.27 6.72 8.31 -40.82 -0.34 6.39 16 38 H 0.13 3.13 6.33 -51.93 -0.33 2.80 16 39 H 0.07 1.65 7.61 -51.93 -0.40 1.26 16 40 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 42 H 0.05 0.98 8.13 -51.93 -0.42 0.56 16 LS Contribution 327.40 15.07 4.93 4.93 Total: -1.00 -28.82 327.40 -6.61 -35.44 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -6.43 Total: 8.37 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 0.25 Total: 7.26 kcal Atomic # 7 Polarization: -33.10 SS G_CDS: 0.25 Total: -32.86 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.59 Total: -37.43 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.82 -6.61 -35.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449962260.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.483 kcal (2) G-P(sol) polarization free energy of solvation -28.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds