Wall clock time and date at job start Tue Mar 31 2020 06:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34225 * 117.00453 * 2 1 4 4 O 1.20824 * 119.99882 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00160 * 180.02562 * 3 2 1 6 6 H 1.09002 * 112.85178 * 50.33035 * 5 3 2 7 7 C 1.53781 * 113.61206 * 279.13729 * 5 3 2 8 8 C 1.53787 * 87.07987 * 219.93687 * 7 5 3 9 9 C 1.53779 * 87.08223 * 25.43200 * 8 7 5 10 10 H 1.08996 * 113.61960 * 89.11479 * 9 8 7 11 11 C 1.50705 * 113.61501 * 220.02362 * 9 8 7 12 12 O 1.21276 * 120.00067 * 97.49383 * 11 9 8 13 13 N 1.34768 * 119.99667 * 277.49605 * 11 9 8 14 14 C 1.46507 * 120.00050 * 180.02562 * 13 11 9 15 15 C 1.52999 * 109.47257 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47215 * 300.00168 * 15 14 13 17 17 C 1.53002 * 109.46982 * 60.00139 * 15 14 13 18 18 C 1.50700 * 109.46898 * 179.97438 * 15 14 13 19 19 H 1.07997 * 119.99911 * 0.02562 * 18 15 14 20 20 C 1.37878 * 119.99800 * 179.97438 * 18 15 14 21 21 N 1.31513 * 120.00043 * 0.02562 * 20 18 15 22 22 Si 1.86801 * 119.99972 * 180.02562 * 20 18 15 23 23 H 1.48494 * 109.47169 * 59.99942 * 22 20 18 24 24 H 1.48498 * 109.47316 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46810 * 300.00124 * 22 20 18 26 26 H 1.08999 * 109.47168 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46776 * 300.00181 * 1 2 3 28 28 H 1.08999 * 109.47104 * 59.99620 * 1 2 3 29 29 H 1.09005 * 113.61302 * 334.48043 * 7 5 3 30 30 H 1.08993 * 113.62030 * 105.38889 * 7 5 3 31 31 H 1.08994 * 113.61650 * 139.98003 * 8 7 5 32 32 H 1.09005 * 113.60968 * 270.79886 * 8 7 5 33 33 H 0.97000 * 120.00844 * 359.97438 * 13 11 9 34 34 H 1.09004 * 109.46711 * 300.00026 * 14 13 11 35 35 H 1.09003 * 109.46940 * 59.99509 * 14 13 11 36 36 H 1.08992 * 109.47453 * 60.00030 * 16 15 14 37 37 H 1.09001 * 109.46936 * 180.02562 * 16 15 14 38 38 H 1.09000 * 109.46789 * 299.99657 * 16 15 14 39 39 H 1.09004 * 109.47329 * 59.99568 * 17 15 14 40 40 H 1.09001 * 109.47065 * 179.97438 * 17 15 14 41 41 H 1.08998 * 109.46752 * 299.99854 * 17 15 14 42 42 H 0.97001 * 120.00276 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 4.0223 0.6567 -0.7741 7 6 4.1938 1.0832 1.3903 8 6 5.1844 2.1963 1.0101 9 6 4.1098 2.7128 0.0389 10 1 3.4212 3.4275 0.4894 11 6 4.6651 3.1846 -1.2803 12 8 4.6526 2.4464 -2.2424 13 7 5.1755 4.4270 -1.3909 14 6 5.7147 4.8860 -2.6734 15 6 6.2262 6.3206 -2.5276 16 6 5.0732 7.2325 -2.1035 17 6 7.3276 6.3640 -1.4664 18 6 6.7814 6.7924 -3.8467 19 1 6.7702 6.1350 -4.7035 20 6 7.3028 8.0638 -3.9601 21 7 7.3159 8.8645 -2.9169 22 14 7.9904 8.6490 -5.5954 23 1 6.9216 8.6063 -6.6254 24 1 8.4869 10.0413 -5.4538 25 1 9.1098 7.7641 -6.0066 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 3.5281 1.3525 2.2104 30 1 4.6631 0.1091 1.5273 31 1 5.4021 2.8847 1.8266 32 1 6.0834 1.8300 0.5142 33 1 5.1852 5.0177 -0.6215 34 1 6.5359 4.2360 -2.9757 35 1 4.9300 4.8554 -3.4293 36 1 4.6720 6.8911 -1.1493 37 1 5.4375 8.2546 -2.0000 38 1 4.2886 7.2016 -2.8595 39 1 8.1490 5.7142 -1.7685 40 1 7.6922 7.3859 -1.3628 41 1 6.9263 6.0225 -0.5122 42 1 7.6830 9.7588 -2.9965 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458047256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:42 Heat of formation + Delta-G solvation = -114.154903 kcal Electronic energy + Delta-G solvation = -22791.549842 eV Core-core repulsion = 19351.213843 eV Total energy + Delta-G solvation = -3440.336000 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.10839 -39.59796 -37.70603 -36.41866 -36.11503 -33.26229 -30.89444 -28.82689 -27.29794 -26.45006 -25.71505 -25.43187 -24.41793 -21.85836 -20.65363 -19.38572 -18.75637 -18.14565 -17.13814 -16.88233 -16.39337 -15.81752 -15.20250 -14.80055 -14.71564 -14.29808 -13.88688 -13.52126 -13.16776 -13.02979 -12.91822 -12.65733 -12.30489 -12.19111 -12.00887 -11.72876 -11.39646 -11.21110 -11.13858 -10.96894 -10.83342 -10.77644 -10.72003 -10.38355 -10.37281 -10.19622 -9.62395 -9.52162 -9.18908 -8.78408 -8.44612 -8.30215 -6.01366 -4.11583 2.07679 2.55623 2.98854 3.30631 3.34848 3.38292 3.74070 4.11063 4.28414 4.40647 4.48829 4.62667 4.90541 4.92692 4.98411 5.25247 5.27006 5.32018 5.41690 5.48194 5.53649 5.66684 5.71945 6.11506 6.22766 6.25228 6.33788 6.52058 6.78672 6.84007 6.94713 7.03027 7.04453 7.36440 7.56687 7.62891 7.69971 8.02021 8.06165 8.16256 8.39281 8.69580 8.89000 9.54174 10.99995 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.032622 B = 0.003389 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.108912 B = 8259.310880 C = 8518.464891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.473 3.527 4 O -0.504 6.504 5 C -0.088 4.088 6 H 0.139 0.861 7 C -0.120 4.120 8 C -0.122 4.122 9 C -0.119 4.119 10 H 0.124 0.876 11 C 0.515 3.485 12 O -0.554 6.554 13 N -0.711 5.711 14 C 0.131 3.869 15 C 0.056 3.944 16 C -0.131 4.131 17 C -0.130 4.130 18 C -0.507 4.507 19 H 0.057 0.943 20 C 0.067 3.933 21 N -0.886 5.886 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.100 0.900 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.399 0.601 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.007 0.993 37 H 0.086 0.914 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.085 0.915 41 H 0.007 0.993 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.699 -14.336 11.250 19.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.316 3.684 4 O -0.391 6.391 5 C -0.108 4.108 6 H 0.157 0.843 7 C -0.157 4.157 8 C -0.159 4.159 9 C -0.140 4.140 10 H 0.142 0.858 11 C 0.300 3.700 12 O -0.433 6.433 13 N -0.361 5.361 14 C 0.008 3.992 15 C 0.056 3.944 16 C -0.189 4.189 17 C -0.188 4.188 18 C -0.546 4.546 19 H 0.075 0.925 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.118 0.882 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.234 0.766 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.026 0.974 37 H 0.104 0.896 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.104 0.896 41 H 0.026 0.974 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.870 -14.344 10.588 19.488 hybrid contribution 0.020 0.765 -0.661 1.011 sum -7.850 -13.579 9.927 18.562 Atomic orbital electron populations 1.23263 0.76578 1.03564 1.02585 1.86515 1.23253 1.33563 1.84102 1.23637 0.91749 0.81261 0.71754 1.90669 1.66981 1.36407 1.45078 1.22473 0.87198 0.99277 1.01823 0.84325 1.22842 0.98026 1.00596 0.94253 1.22810 0.96803 0.97891 0.98428 1.22790 0.99321 0.96139 0.95772 0.85774 1.20170 0.78210 0.82300 0.89289 1.90654 1.57863 1.55144 1.39630 1.46273 1.60564 1.14048 1.15195 1.21738 0.97032 0.97666 0.82732 1.18345 0.92517 0.87832 0.95731 1.21833 0.97277 1.03907 0.95889 1.21829 0.98523 1.03405 0.95065 1.20959 1.39590 0.98879 0.95156 0.92506 1.24875 0.95558 0.96540 0.96497 1.69793 1.45883 1.07904 1.28894 0.86631 0.79432 0.77646 0.84142 1.20280 1.21324 1.20279 0.88159 0.91982 0.91845 0.89330 0.89456 0.89533 0.88765 0.76599 0.92690 0.92767 0.97444 0.89583 0.95464 0.95455 0.89598 0.97450 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -4.16 10.56 -39.24 -0.41 -4.57 16 3 C 0.47 6.32 7.48 36.01 0.27 6.59 16 4 O -0.50 -8.09 15.67 -18.75 -0.29 -8.38 16 5 C -0.09 -1.05 3.58 -90.96 -0.33 -1.38 16 6 H 0.14 1.74 7.43 -51.93 -0.39 1.35 16 7 C -0.12 -1.01 7.63 -25.92 -0.20 -1.21 16 8 C -0.12 -1.16 7.63 -25.92 -0.20 -1.36 16 9 C -0.12 -1.54 3.47 -90.96 -0.32 -1.85 16 10 H 0.12 1.58 7.46 -51.93 -0.39 1.19 16 11 C 0.52 8.95 7.36 -10.99 -0.08 8.87 16 12 O -0.55 -11.53 15.90 5.56 0.09 -11.44 16 13 N -0.71 -12.78 4.96 -60.29 -0.30 -13.08 16 14 C 0.13 2.81 4.50 -4.04 -0.02 2.79 16 15 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 16 C -0.13 -3.01 8.08 37.16 0.30 -2.71 16 17 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 18 C -0.51 -13.39 8.01 -34.44 -0.28 -13.66 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 20 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 21 N -0.89 -23.70 9.35 55.43 0.52 -23.18 16 22 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 28 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 29 H 0.09 0.67 8.09 -51.93 -0.42 0.25 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 33 H 0.40 6.48 6.16 -40.82 -0.25 6.23 16 34 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 37 H 0.09 2.17 6.07 -51.93 -0.32 1.85 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 41 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 42 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 341.75 15.07 5.15 5.15 Total: -1.00 -30.81 341.75 -6.47 -37.28 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.55 Total: 4.69 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 0.35 Total: -2.27 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.22 Total: -36.26 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.62 Total: -24.39 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.81 -6.47 -37.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458047256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.873 kcal (2) G-P(sol) polarization free energy of solvation -30.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds