Wall clock time and date at job start Tue Mar 31 2020 06:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34224 * 117.00026 * 2 1 4 4 O 1.20823 * 120.00241 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99989 * 180.27633 * 3 2 1 6 6 H 1.08998 * 112.85497 * 309.39477 * 5 3 2 7 7 C 1.53782 * 113.61379 * 80.59316 * 5 3 2 8 8 C 1.53781 * 87.08260 * 139.98076 * 7 5 3 9 9 C 1.53787 * 113.61424 * 178.19836 * 5 3 2 10 10 H 1.08997 * 113.61535 * 334.56716 * 9 5 3 11 11 C 1.50702 * 113.61260 * 105.47164 * 9 5 3 12 12 O 1.21277 * 120.00290 * 0.02562 * 11 9 5 13 13 N 1.34780 * 119.99622 * 179.97438 * 11 9 5 14 14 C 1.46494 * 119.99793 * 180.02562 * 13 11 9 15 15 C 1.53004 * 109.47236 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.46912 * 299.99843 * 15 14 13 17 17 C 1.53000 * 109.46937 * 59.99819 * 15 14 13 18 18 C 1.50702 * 109.47064 * 179.97438 * 15 14 13 19 19 H 1.08000 * 119.99994 * 357.00306 * 18 15 14 20 20 C 1.37882 * 119.99730 * 177.00768 * 18 15 14 21 21 N 1.31517 * 119.99658 * 5.53837 * 20 18 15 22 22 Si 1.86797 * 119.99912 * 185.54350 * 20 18 15 23 23 H 1.48493 * 109.47200 * 84.99622 * 22 20 18 24 24 H 1.48505 * 109.47074 * 204.99966 * 22 20 18 25 25 H 1.48510 * 109.47048 * 324.99591 * 22 20 18 26 26 H 1.09004 * 109.46632 * 299.99467 * 1 2 3 27 27 H 1.08992 * 109.47329 * 59.99592 * 1 2 3 28 28 H 1.09007 * 109.46905 * 179.97438 * 1 2 3 29 29 H 1.09002 * 113.61232 * 254.52951 * 7 5 3 30 30 H 1.08996 * 113.61584 * 25.42618 * 7 5 3 31 31 H 1.08999 * 113.61470 * 89.11602 * 8 7 5 32 32 H 1.09004 * 113.61377 * 219.93291 * 8 7 5 33 33 H 0.97002 * 119.99833 * 359.97438 * 13 11 9 34 34 H 1.09004 * 109.47064 * 299.99883 * 14 13 11 35 35 H 1.08998 * 109.47405 * 59.99945 * 14 13 11 36 36 H 1.08998 * 109.46992 * 53.92982 * 16 15 14 37 37 H 1.09002 * 109.46838 * 173.93287 * 16 15 14 38 38 H 1.09000 * 109.46864 * 293.93137 * 16 15 14 39 39 H 1.09004 * 109.47351 * 60.00319 * 17 15 14 40 40 H 1.08997 * 109.46873 * 180.02562 * 17 15 14 41 41 H 1.09003 * 109.47459 * 299.99858 * 17 15 14 42 42 H 0.97002 * 119.99507 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0063 6 1 4.0257 0.6587 0.7666 7 6 4.1875 1.0801 -1.3995 8 6 5.1784 2.1956 -1.0272 9 6 4.1076 2.7136 -0.0498 10 1 3.4159 3.4270 -0.4979 11 6 4.6684 3.1876 1.2663 12 8 4.6618 2.4502 2.2291 13 7 5.1781 4.4307 1.3729 14 6 5.7237 4.8913 2.6521 15 6 6.2329 6.3264 2.5023 16 6 7.3285 6.3700 1.4352 17 6 5.0766 7.2366 2.0836 18 6 6.7936 6.8004 3.8183 19 1 6.7437 6.1619 4.6879 20 6 7.3703 8.0493 3.9122 21 7 7.3343 8.8691 2.8844 22 14 8.2028 8.5768 5.4990 23 1 9.6040 8.0854 5.5099 24 1 8.1972 10.0589 5.5920 25 1 7.4688 8.0054 6.6567 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 4.6576 0.1061 -1.5357 30 1 3.5177 1.3460 -2.2173 31 1 6.0795 1.8323 -0.5331 32 1 5.3925 2.8811 -1.8472 33 1 5.1843 5.0201 0.6025 34 1 4.9431 4.8607 3.4122 35 1 6.5472 4.2426 2.9506 36 1 6.9544 5.9272 0.5121 37 1 7.6156 7.4053 1.2513 38 1 8.1960 5.8085 1.7820 39 1 4.2960 7.2056 2.8439 40 1 5.4394 8.2589 1.9765 41 1 4.6706 6.8940 1.1318 42 1 7.7404 9.7475 2.9503 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458047259.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:44 Heat of formation + Delta-G solvation = -132.723446 kcal Electronic energy + Delta-G solvation = -22791.663968 eV Core-core repulsion = 19350.522775 eV Total energy + Delta-G solvation = -3441.141192 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.12550 -40.82293 -38.92558 -37.85800 -37.32904 -34.99779 -32.75807 -29.67753 -28.51269 -27.57139 -27.34222 -27.23360 -25.98502 -22.75113 -21.95008 -20.66346 -20.31115 -19.24660 -18.29680 -17.91999 -17.70681 -17.33029 -16.70893 -16.55714 -16.17910 -15.30855 -15.19164 -14.80789 -14.56994 -14.39458 -14.06051 -13.95467 -13.81885 -13.27245 -13.16450 -13.06946 -12.85114 -12.69359 -12.63749 -12.58201 -12.26173 -12.16250 -12.13229 -11.84312 -11.53875 -11.48802 -11.36139 -11.25321 -10.78246 -10.63737 -10.39868 -9.95261 -8.03766 -6.18432 1.07851 1.42332 1.44654 1.52338 1.61721 1.70501 2.33596 2.50364 3.17139 3.20082 3.44026 3.67723 3.74550 3.93637 4.19593 4.29033 4.30104 4.43972 4.49528 4.59992 4.64794 4.68659 4.71427 4.81741 4.95311 4.99199 5.04477 5.05370 5.10783 5.18460 5.30140 5.33535 5.37556 5.58912 5.66081 5.67920 6.13520 6.20258 6.42231 6.64005 6.66944 6.85444 7.29254 7.48935 8.95776 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.033002 B = 0.003380 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.232711 B = 8283.173404 C = 8515.611151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.473 3.527 4 O -0.539 6.539 5 C -0.097 4.097 6 H 0.130 0.870 7 C -0.099 4.099 8 C -0.111 4.111 9 C -0.122 4.122 10 H 0.130 0.870 11 C 0.513 3.487 12 O -0.592 6.592 13 N -0.706 5.706 14 C 0.147 3.853 15 C 0.052 3.948 16 C -0.118 4.118 17 C -0.121 4.121 18 C -0.533 4.533 19 H 0.043 0.957 20 C 0.030 3.970 21 N -0.898 5.898 22 Si 0.945 3.055 23 H -0.276 1.276 24 H -0.283 1.283 25 H -0.277 1.277 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.134 0.866 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.410 0.590 34 H 0.032 0.968 35 H 0.042 0.958 36 H 0.041 0.959 37 H 0.059 0.941 38 H 0.020 0.980 39 H 0.013 0.987 40 H 0.064 0.936 41 H 0.036 0.964 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.755 -15.521 -13.174 21.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.276 6.276 3 C 0.317 3.683 4 O -0.428 6.428 5 C -0.116 4.116 6 H 0.148 0.852 7 C -0.136 4.136 8 C -0.149 4.149 9 C -0.143 4.143 10 H 0.148 0.852 11 C 0.300 3.700 12 O -0.474 6.474 13 N -0.357 5.357 14 C 0.023 3.977 15 C 0.051 3.949 16 C -0.175 4.175 17 C -0.179 4.179 18 C -0.571 4.571 19 H 0.061 0.939 20 C -0.170 4.170 21 N -0.537 5.537 22 Si 0.771 3.229 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.203 1.203 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.153 0.847 29 H 0.129 0.871 30 H 0.121 0.879 31 H 0.109 0.891 32 H 0.129 0.871 33 H 0.247 0.753 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.039 0.961 39 H 0.033 0.967 40 H 0.082 0.918 41 H 0.054 0.946 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.929 -15.544 -12.540 21.488 hybrid contribution 0.055 1.035 1.261 1.632 sum -7.874 -14.509 -11.279 19.993 Atomic orbital electron populations 1.23569 0.74948 1.05805 1.02396 1.86509 1.24902 1.32615 1.83531 1.23947 0.92324 0.81219 0.70788 1.90650 1.67792 1.37480 1.46914 1.22610 0.86483 0.98436 1.04110 0.85237 1.22846 0.97202 1.01477 0.92104 1.22883 0.95900 0.98339 0.97729 1.22938 1.00933 0.96711 0.93729 0.85245 1.21002 0.77089 0.81347 0.90531 1.90634 1.59269 1.56135 1.41357 1.46126 1.60555 1.14737 1.14287 1.21266 0.95802 0.96536 0.84109 1.18349 0.92972 0.88667 0.94885 1.21636 0.97746 1.01679 0.96481 1.21700 0.96706 1.02519 0.96958 1.21274 1.38897 1.01146 0.95823 0.93853 1.25449 0.96347 0.96313 0.98926 1.69929 1.44662 1.08000 1.31064 0.85784 0.79146 0.77141 0.80799 1.20218 1.20848 1.20259 0.92822 0.91446 0.84749 0.87104 0.87862 0.89056 0.87093 0.75315 0.94996 0.93960 0.94028 0.92163 0.96100 0.96737 0.91766 0.94551 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.60 16 2 O -0.36 -7.82 10.56 -51.36 -0.54 -8.36 16 3 C 0.47 12.12 7.48 71.23 0.53 12.65 16 4 O -0.54 -16.97 15.66 21.97 0.34 -16.63 16 5 C -0.10 -2.15 3.58 -11.01 -0.04 -2.19 16 6 H 0.13 3.15 7.43 -2.39 -0.02 3.13 16 7 C -0.10 -1.32 7.63 31.12 0.24 -1.08 16 8 C -0.11 -1.75 7.64 31.18 0.24 -1.51 16 9 C -0.12 -2.93 3.47 -10.95 -0.04 -2.97 16 10 H 0.13 3.03 7.45 -2.39 -0.02 3.01 16 11 C 0.51 17.51 7.36 87.66 0.65 18.15 16 12 O -0.59 -24.93 15.90 -3.02 -0.05 -24.98 16 13 N -0.71 -24.78 4.90 -463.06 -2.27 -27.05 16 14 C 0.15 6.38 4.50 86.38 0.39 6.77 16 15 C 0.05 2.43 0.50 -52.92 -0.03 2.40 16 16 C -0.12 -5.16 8.03 71.98 0.58 -4.59 16 17 C -0.12 -5.52 8.10 71.98 0.58 -4.93 16 18 C -0.53 -28.59 8.01 25.60 0.20 -28.38 16 19 H 0.04 2.38 7.75 -2.91 -0.02 2.36 16 20 C 0.03 1.58 5.13 84.66 0.43 2.01 16 21 N -0.90 -48.18 9.45 21.45 0.20 -47.98 16 22 Si 0.94 42.93 29.54 68.60 2.03 44.96 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 26 H 0.05 0.95 8.13 -2.38 -0.02 0.93 16 27 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16 28 H 0.13 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.10 1.14 8.09 -2.39 -0.02 1.12 16 31 H 0.09 1.54 8.09 -2.39 -0.02 1.52 16 32 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.41 12.45 6.16 -92.71 -0.57 11.88 16 34 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.04 1.50 6.71 -2.39 -0.02 1.48 16 37 H 0.06 2.92 6.25 -2.39 -0.01 2.91 16 38 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.06 3.23 6.10 -2.39 -0.01 3.21 16 41 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 42 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 Total: -1.00 -67.79 341.82 5.09 -62.69 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.45 Total: 19.42 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 4.94 Total: -2.07 kcal Atomic # 7 Polarization: -72.96 SS G_CDS: -2.07 Total: -75.03 kcal Atomic # 8 Polarization: -49.73 SS G_CDS: -0.25 Total: -49.97 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -67.79 5.09 -62.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458047259.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.032 kcal (2) G-P(sol) polarization free energy of solvation -67.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds