Wall clock time and date at job start Tue Mar 31 2020 06:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34226 * 117.00164 * 2 1 4 4 O 1.20827 * 119.99911 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00249 * 180.02562 * 3 2 1 6 6 H 1.09001 * 112.85428 * 71.33497 * 5 3 2 7 7 C 1.53784 * 113.69140 * 300.07278 * 5 3 2 8 8 C 1.54056 * 87.07841 * 220.00721 * 7 5 3 9 9 C 1.53779 * 86.98267 * 25.43378 * 8 7 5 10 10 H 1.09007 * 113.61367 * 219.98435 * 9 8 7 11 11 C 1.50691 * 113.61923 * 89.16187 * 9 8 7 12 12 O 1.21287 * 120.00135 * 327.50817 * 11 9 8 13 13 N 1.34772 * 120.00373 * 147.50927 * 11 9 8 14 14 C 1.46500 * 120.00311 * 180.02562 * 13 11 9 15 15 C 1.53001 * 109.47341 * 179.72258 * 14 13 11 16 16 C 1.52997 * 109.47248 * 299.99739 * 15 14 13 17 17 C 1.53003 * 109.46915 * 60.00137 * 15 14 13 18 18 C 1.50703 * 109.47120 * 179.97438 * 15 14 13 19 19 H 1.07997 * 120.00107 * 359.97438 * 18 15 14 20 20 C 1.37880 * 119.99800 * 180.02562 * 18 15 14 21 21 N 1.31515 * 120.00298 * 359.97438 * 20 18 15 22 22 Si 1.86796 * 119.99857 * 179.97438 * 20 18 15 23 23 H 1.48504 * 109.47032 * 89.99726 * 22 20 18 24 24 H 1.48501 * 109.47464 * 209.99986 * 22 20 18 25 25 H 1.48504 * 109.47469 * 330.00326 * 22 20 18 26 26 H 1.09008 * 109.46938 * 299.99152 * 1 2 3 27 27 H 1.08998 * 109.47767 * 59.99479 * 1 2 3 28 28 H 1.09001 * 109.47436 * 179.97438 * 1 2 3 29 29 H 1.08998 * 113.61300 * 334.55541 * 7 5 3 30 30 H 1.08997 * 113.61572 * 105.37570 * 7 5 3 31 31 H 1.08996 * 113.61458 * 270.92779 * 8 7 5 32 32 H 1.09001 * 113.69086 * 139.94531 * 8 7 5 33 33 H 0.96999 * 119.99861 * 359.72592 * 13 11 9 34 34 H 1.09002 * 109.47183 * 299.72099 * 14 13 11 35 35 H 1.09002 * 109.47299 * 59.72419 * 14 13 11 36 36 H 1.09009 * 109.46781 * 59.99931 * 16 15 14 37 37 H 1.08997 * 109.47204 * 180.02562 * 16 15 14 38 38 H 1.09000 * 109.47478 * 300.00308 * 16 15 14 39 39 H 1.08993 * 109.47138 * 60.00273 * 17 15 14 40 40 H 1.09005 * 109.47049 * 180.02562 * 17 15 14 41 41 H 1.09000 * 109.46629 * 299.99612 * 17 15 14 42 42 H 0.96998 * 119.99979 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2748 -0.0006 6 1 4.0054 0.9762 -0.9524 7 6 4.2207 0.6022 1.2177 8 6 5.2078 1.7848 1.2412 9 6 4.1136 2.6066 0.5396 10 1 4.4955 3.2689 -0.2374 11 6 3.1764 3.3022 1.4927 12 8 2.9084 2.7924 2.5601 13 7 2.6359 4.4909 1.1592 14 6 1.7252 5.1675 2.0861 15 6 1.2633 6.4908 1.4725 16 6 2.4783 7.3826 1.2094 17 6 0.5373 6.2156 0.1540 18 6 0.3259 7.1864 2.4257 19 1 0.0836 6.7301 3.3741 20 6 -0.2230 8.4049 2.0866 21 7 0.0717 8.9603 0.9315 22 14 -1.3854 9.2668 3.2678 23 1 -0.6064 10.1496 4.1729 24 1 -2.3587 10.0823 2.4979 25 1 -2.1150 8.2537 4.0720 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 3.5721 0.5574 2.0925 30 1 4.6893 -0.3549 0.9887 31 1 6.0948 1.6254 0.6282 32 1 5.4436 2.1386 2.2448 33 1 2.8532 4.9006 0.3072 34 1 0.8595 4.5322 2.2735 35 1 2.2423 5.3635 3.0254 36 1 3.1559 6.8792 0.5197 37 1 2.1491 8.3255 0.7727 38 1 2.9954 7.5785 2.1487 39 1 -0.3282 5.5804 0.3415 40 1 0.2086 7.1584 -0.2834 41 1 1.2150 5.7123 -0.5356 42 1 -0.3142 9.8177 0.6931 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458047453.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:48 Heat of formation + Delta-G solvation = -106.394275 kcal Electronic energy + Delta-G solvation = -23636.256359 eV Core-core repulsion = 20196.256885 eV Total energy + Delta-G solvation = -3439.999474 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.14672 -39.39148 -37.44187 -36.25661 -35.91123 -33.14430 -30.80699 -28.66430 -27.05461 -26.34014 -25.62785 -25.35399 -24.36589 -21.69239 -21.01478 -19.14304 -18.60658 -17.89047 -16.94825 -16.49016 -16.14152 -15.67879 -15.24649 -14.69395 -14.48099 -14.43796 -13.92588 -13.32611 -12.98407 -12.89155 -12.75260 -12.68336 -12.24009 -12.07939 -11.83857 -11.58083 -11.26211 -11.13256 -11.00070 -10.79542 -10.73805 -10.67179 -10.58034 -10.29317 -10.16562 -10.14010 -9.53511 -9.40350 -9.10044 -8.70456 -8.36070 -8.15113 -5.96171 -4.05820 2.28759 2.67760 3.07113 3.31414 3.38042 3.42316 3.77828 4.24852 4.43914 4.44520 4.63924 4.76630 4.98992 5.11318 5.21187 5.30275 5.31356 5.35760 5.51928 5.53522 5.64606 5.83151 5.88557 6.22681 6.36305 6.43192 6.44891 6.61353 6.88579 6.94496 7.05122 7.13800 7.18550 7.46069 7.64913 7.75467 7.81920 8.09567 8.17988 8.27295 8.46155 8.84183 8.95304 9.59310 11.05183 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.023467 B = 0.004516 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.857840 B = 6198.404305 C = 6736.452394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.360 6.360 3 C 0.461 3.539 4 O -0.480 6.480 5 C -0.091 4.091 6 H 0.133 0.867 7 C -0.119 4.119 8 C -0.119 4.119 9 C -0.120 4.120 10 H 0.100 0.900 11 C 0.531 3.469 12 O -0.558 6.558 13 N -0.697 5.697 14 C 0.137 3.863 15 C 0.056 3.944 16 C -0.130 4.130 17 C -0.126 4.126 18 C -0.503 4.503 19 H 0.056 0.944 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.396 0.604 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.006 0.994 37 H 0.085 0.915 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.082 0.918 41 H 0.007 0.993 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.234 -15.809 -5.292 18.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.277 6.277 3 C 0.302 3.698 4 O -0.365 6.365 5 C -0.110 4.110 6 H 0.151 0.849 7 C -0.156 4.156 8 C -0.157 4.157 9 C -0.142 4.142 10 H 0.118 0.882 11 C 0.315 3.685 12 O -0.439 6.439 13 N -0.345 5.345 14 C 0.014 3.986 15 C 0.055 3.945 16 C -0.187 4.187 17 C -0.184 4.184 18 C -0.542 4.542 19 H 0.074 0.926 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.200 1.200 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.231 0.769 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.025 0.975 37 H 0.103 0.897 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.101 0.899 41 H 0.026 0.974 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.717 -15.659 -4.632 18.061 hybrid contribution -0.864 0.816 0.030 1.189 sum 6.852 -14.843 -4.602 16.984 Atomic orbital electron populations 1.23242 0.76433 1.03292 1.02842 1.86457 1.23324 1.33552 1.84386 1.23557 0.91667 0.81701 0.72867 1.90805 1.66502 1.35803 1.43410 1.22455 0.87752 0.98459 1.02358 0.84909 1.22981 0.97933 0.97812 0.96868 1.22777 0.95689 0.95315 1.01904 1.22491 0.97159 0.95472 0.99097 0.88153 1.19557 0.80777 0.81598 0.86527 1.90629 1.62850 1.65747 1.24627 1.46074 1.46447 1.20144 1.21861 1.21635 0.91036 0.94529 0.91354 1.18350 0.93405 0.88847 0.93883 1.21821 0.96136 1.02667 0.98112 1.21768 0.97946 1.01369 0.97299 1.20996 1.26494 1.03964 1.02747 0.92579 1.24877 0.96381 0.97076 0.95206 1.69814 1.44253 1.17462 1.20973 0.86586 0.80798 0.79576 0.80977 1.20740 1.21297 1.19967 0.91721 0.91958 0.88363 0.88123 0.90304 0.88982 0.89762 0.76866 0.92968 0.93074 0.97537 0.89660 0.95544 0.95557 0.89894 0.97403 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.47 16 2 O -0.36 -4.79 10.56 -39.25 -0.41 -5.20 16 3 C 0.46 6.86 6.94 36.00 0.25 7.11 16 4 O -0.48 -8.92 14.16 -18.75 -0.27 -9.19 16 5 C -0.09 -1.03 4.21 -90.96 -0.38 -1.42 16 6 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 7 C -0.12 -1.27 7.21 -25.77 -0.19 -1.46 16 8 C -0.12 -1.22 7.48 -25.77 -0.19 -1.41 16 9 C -0.12 -1.54 4.15 -90.96 -0.38 -1.92 16 10 H 0.10 1.06 8.13 -51.92 -0.42 0.64 16 11 C 0.53 9.63 4.65 -10.99 -0.05 9.58 16 12 O -0.56 -11.87 15.22 5.55 0.08 -11.79 16 13 N -0.70 -13.52 4.61 -60.30 -0.28 -13.79 16 14 C 0.14 3.13 4.50 -4.04 -0.02 3.11 16 15 C 0.06 1.36 0.50 -155.66 -0.08 1.28 16 16 C -0.13 -3.03 8.08 37.16 0.30 -2.73 16 17 C -0.13 -3.06 8.08 37.16 0.30 -2.76 16 18 C -0.50 -13.70 8.01 -34.44 -0.28 -13.98 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 20 C 0.07 1.78 5.15 -17.82 -0.09 1.68 16 21 N -0.89 -24.27 9.35 55.43 0.52 -23.75 16 22 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 26 H 0.06 0.82 8.13 -51.92 -0.42 0.40 16 27 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 28 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.10 1.37 7.08 -51.93 -0.37 1.01 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.98 8.02 -51.93 -0.42 0.57 16 33 H 0.40 7.13 6.16 -40.82 -0.25 6.88 16 34 H 0.05 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.01 0.12 6.86 -51.92 -0.36 -0.24 16 37 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 41 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 42 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 337.00 15.07 5.08 5.08 Total: -1.00 -31.90 337.00 -6.60 -38.50 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -6.57 Total: 5.34 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 0.26 Total: -1.43 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.24 Total: -37.55 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.60 Total: -26.18 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.90 -6.60 -38.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458047453.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.890 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds