Wall clock time and date at job start Tue Mar 31 2020 06:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 116.99354 * 2 1 4 4 O 1.20822 * 120.00565 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99590 * 179.97438 * 3 2 1 6 6 H 1.08996 * 112.90642 * 45.93834 * 5 3 2 7 7 C 1.53785 * 113.61611 * 177.18267 * 5 3 2 8 8 C 1.53779 * 87.08191 * 139.98330 * 7 5 3 9 9 C 1.53777 * 113.61738 * 274.68173 * 5 3 2 10 10 H 1.09011 * 113.68896 * 105.46143 * 9 5 3 11 11 C 1.50693 * 113.61751 * 334.56998 * 9 5 3 12 12 O 1.21286 * 119.99946 * 318.79190 * 11 9 5 13 13 N 1.34774 * 120.00425 * 138.78840 * 11 9 5 14 14 C 1.46499 * 120.00139 * 179.97438 * 13 11 9 15 15 C 1.53003 * 109.47207 * 179.97438 * 14 13 11 16 16 C 1.53013 * 109.46631 * 60.00537 * 15 14 13 17 17 C 1.52995 * 109.47427 * 300.00777 * 15 14 13 18 18 C 1.50697 * 109.47312 * 179.97438 * 15 14 13 19 19 H 1.08000 * 119.99895 * 5.56866 * 18 15 14 20 20 C 1.37873 * 120.00293 * 185.55447 * 18 15 14 21 21 N 1.31515 * 120.00136 * 158.09267 * 20 18 15 22 22 Si 1.86801 * 120.00145 * 338.10343 * 20 18 15 23 23 H 1.48502 * 109.46801 * 272.75891 * 22 20 18 24 24 H 1.48498 * 109.47162 * 32.75362 * 22 20 18 25 25 H 1.48493 * 109.47521 * 152.75492 * 22 20 18 26 26 H 1.08998 * 109.47375 * 299.99593 * 1 2 3 27 27 H 1.08995 * 109.47390 * 60.00055 * 1 2 3 28 28 H 1.09001 * 109.46591 * 179.97438 * 1 2 3 29 29 H 1.09004 * 113.60858 * 25.43520 * 7 5 3 30 30 H 1.09002 * 113.69180 * 254.54773 * 7 5 3 31 31 H 1.08997 * 113.61472 * 220.02186 * 8 7 5 32 32 H 1.08998 * 113.68757 * 89.13095 * 8 7 5 33 33 H 0.96994 * 119.99863 * 0.02562 * 13 11 9 34 34 H 1.09002 * 109.46819 * 60.00487 * 14 13 11 35 35 H 1.08998 * 109.47608 * 300.00784 * 14 13 11 36 36 H 1.08996 * 109.46946 * 175.08257 * 16 15 14 37 37 H 1.08996 * 109.46726 * 295.08226 * 16 15 14 38 38 H 1.08992 * 109.46865 * 55.07916 * 16 15 14 39 39 H 1.09002 * 109.46933 * 299.99658 * 17 15 14 40 40 H 1.09000 * 109.47225 * 59.99624 * 17 15 14 41 41 H 1.08995 * 109.47117 * 179.97438 * 17 15 14 42 42 H 0.97001 * 120.00329 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 1 4.0268 0.5998 -0.7206 7 6 4.1078 2.7126 -0.0688 8 6 5.1782 2.2746 0.9448 9 6 4.1870 1.1927 1.4051 10 1 4.6571 0.2331 1.6207 11 6 3.2607 1.6500 2.5022 12 8 2.5662 2.6310 2.3399 13 7 3.2038 0.9690 3.6639 14 6 2.3037 1.4140 4.7306 15 6 2.4314 0.4738 5.9310 16 6 3.8740 0.4907 6.4408 17 6 2.0568 -0.9478 5.5074 18 6 1.5060 0.9319 7.0285 19 1 0.8238 1.7506 6.8531 20 6 1.5299 0.3057 8.2566 21 7 1.0766 0.9297 9.3219 22 14 2.2065 -1.4289 8.4076 23 1 1.1220 -2.4080 8.1418 24 1 3.2998 -1.6214 7.4213 25 1 2.7354 -1.6363 9.7795 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 3.4160 3.4590 0.3219 30 1 4.5138 2.9812 -1.0440 31 1 5.3909 3.0245 1.7067 32 1 6.0800 1.8726 0.4831 33 1 3.7595 0.1846 3.7938 34 1 1.2760 1.4015 4.3676 35 1 2.5703 2.4270 5.0320 36 1 3.9460 -0.1100 7.3474 37 1 4.5338 0.0777 5.6778 38 1 4.1697 1.5166 6.6601 39 1 1.0292 -0.9599 5.1442 40 1 2.7266 -1.2789 4.7138 41 1 2.1482 -1.6176 6.3624 42 1 1.0937 0.4893 10.1860 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458047454.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:52 Heat of formation + Delta-G solvation = -87.131436 kcal Electronic energy + Delta-G solvation = -23598.547012 eV Core-core repulsion = 20159.382838 eV Total energy + Delta-G solvation = -3439.164174 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.21622 -39.50399 -37.75444 -36.38991 -36.04099 -33.31319 -31.52541 -28.68113 -27.49277 -26.36504 -26.33670 -25.40774 -24.60632 -21.81457 -20.99902 -19.44616 -18.84182 -18.02040 -16.90811 -16.52112 -16.28790 -15.98848 -15.49054 -14.96678 -14.83654 -14.56849 -14.11638 -13.52144 -13.17768 -12.99176 -12.92048 -12.82702 -12.58042 -12.25553 -12.20699 -11.97114 -11.93305 -11.51922 -11.27414 -11.10941 -10.73250 -10.68182 -10.49074 -10.30896 -10.28530 -10.20910 -10.04133 -9.42783 -9.20385 -8.66453 -8.52567 -8.35820 -6.19868 -4.11504 2.27448 2.71131 2.80677 3.22098 3.29931 3.36417 3.52173 4.18921 4.34658 4.35909 4.60626 4.66804 4.95522 5.10082 5.11227 5.13490 5.22284 5.25198 5.43328 5.55068 5.57813 5.74389 5.78389 5.84435 6.04847 6.07279 6.29153 6.36114 6.46261 6.50489 6.52527 6.62848 6.70326 6.77804 6.96109 7.23329 7.42541 7.72657 7.86731 7.90734 8.42175 8.57379 8.89663 9.47631 10.93151 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.023425 B = 0.004647 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.003300 B = 6023.810772 C = 6454.713524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.364 6.364 3 C 0.461 3.539 4 O -0.477 6.477 5 C -0.089 4.089 6 H 0.127 0.873 7 C -0.118 4.118 8 C -0.119 4.119 9 C -0.123 4.123 10 H 0.102 0.898 11 C 0.509 3.491 12 O -0.524 6.524 13 N -0.716 5.716 14 C 0.143 3.857 15 C 0.031 3.969 16 C -0.140 4.140 17 C -0.150 4.150 18 C -0.520 4.520 19 H 0.075 0.925 20 C 0.081 3.919 21 N -0.882 5.882 22 Si 0.870 3.130 23 H -0.284 1.284 24 H -0.243 1.243 25 H -0.302 1.302 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.396 0.604 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.022 0.978 38 H 0.048 0.952 39 H 0.050 0.950 40 H 0.027 0.973 41 H 0.046 0.954 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.168 -4.091 -18.792 20.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.281 6.281 3 C 0.301 3.699 4 O -0.361 6.361 5 C -0.108 4.108 6 H 0.145 0.855 7 C -0.155 4.155 8 C -0.156 4.156 9 C -0.145 4.145 10 H 0.121 0.879 11 C 0.293 3.707 12 O -0.401 6.401 13 N -0.367 5.367 14 C 0.021 3.979 15 C 0.030 3.970 16 C -0.197 4.197 17 C -0.207 4.207 18 C -0.557 4.557 19 H 0.093 0.907 20 C -0.122 4.122 21 N -0.518 5.518 22 Si 0.701 3.299 23 H -0.212 1.212 24 H -0.169 1.169 25 H -0.230 1.230 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.117 0.883 29 H 0.131 0.869 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.231 0.769 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.041 0.959 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.046 0.954 41 H 0.065 0.935 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.351 -3.050 -18.670 20.296 hybrid contribution 0.232 -1.547 0.411 1.617 sum 7.584 -4.597 -18.259 20.299 Atomic orbital electron populations 1.23228 0.76480 1.03443 1.02580 1.86479 1.23372 1.33749 1.84503 1.23402 0.91624 0.81547 0.73291 1.90684 1.66470 1.36120 1.42808 1.22431 0.87935 1.01973 0.98509 0.85492 1.23039 0.97845 0.94746 0.99904 1.22740 0.96272 0.97323 0.99312 1.22456 0.97583 1.01948 0.92490 0.87934 1.19938 0.83426 0.84126 0.83250 1.90782 1.43060 1.25918 1.80291 1.46303 1.44105 1.31011 1.15292 1.21504 0.92114 0.98593 0.85717 1.18681 0.94243 0.91189 0.92896 1.22255 0.96875 1.00953 0.99632 1.22433 1.00229 0.99007 0.99048 1.20648 1.21610 1.18938 0.94526 0.90710 1.24919 0.94508 0.97630 0.95161 1.70045 1.46585 1.36259 0.98885 0.87584 0.80170 0.86340 0.75849 1.21157 1.16857 1.22997 0.91682 0.92197 0.88294 0.86859 0.90638 0.90007 0.88764 0.76870 0.92270 0.91828 0.92826 0.95913 0.93242 0.93122 0.95438 0.93514 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 16 2 O -0.36 -4.99 10.57 -39.25 -0.41 -5.40 16 3 C 0.46 6.81 6.02 36.01 0.22 7.03 16 4 O -0.48 -8.65 14.37 -25.17 -0.36 -9.01 16 5 C -0.09 -0.98 4.20 -90.96 -0.38 -1.36 16 6 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 7 C -0.12 -1.29 6.98 -25.92 -0.18 -1.47 16 8 C -0.12 -1.11 7.65 -25.92 -0.20 -1.31 16 9 C -0.12 -1.40 4.28 -90.96 -0.39 -1.78 16 10 H 0.10 0.88 8.09 -51.92 -0.42 0.46 16 11 C 0.51 8.27 6.35 -10.99 -0.07 8.20 16 12 O -0.52 -10.60 13.36 -13.31 -0.18 -10.78 16 13 N -0.72 -11.79 4.99 -60.30 -0.30 -12.09 16 14 C 0.14 2.91 4.51 -4.04 -0.02 2.89 16 15 C 0.03 0.68 0.50 -155.66 -0.08 0.60 16 16 C -0.14 -2.83 7.62 37.16 0.28 -2.55 16 17 C -0.15 -3.02 7.61 37.15 0.28 -2.73 16 18 C -0.52 -13.97 8.59 -34.44 -0.30 -14.27 16 19 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 20 C 0.08 2.25 5.22 -17.82 -0.09 2.16 16 21 N -0.88 -26.22 13.96 55.43 0.77 -25.45 16 22 Si 0.87 20.56 23.19 -169.99 -3.94 16.62 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.24 -5.18 4.47 56.52 0.25 -4.93 16 25 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 26 H 0.06 0.87 8.13 -51.93 -0.42 0.44 16 27 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 28 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.11 1.66 6.27 -51.93 -0.33 1.34 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.40 5.60 6.16 -40.82 -0.25 5.35 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.05 1.15 4.06 -51.93 -0.21 0.94 16 37 H 0.02 0.37 7.01 -51.93 -0.36 0.01 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 41 H 0.05 0.98 2.55 -51.93 -0.13 0.85 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 325.99 15.07 4.91 4.91 Total: -1.00 -33.33 325.99 -5.78 -39.11 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.41 Total: 5.20 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 0.14 Total: -3.11 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.47 Total: -37.54 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.95 Total: -25.19 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -3.94 Total: 16.62 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.33 -5.78 -39.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458047454.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.022 kcal (2) G-P(sol) polarization free energy of solvation -33.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds