Wall clock time and date at job start Tue Mar 31 2020 05:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53044 * 109.46082 * 300.02791 * 9 7 2 11 11 C 1.53191 * 109.31319 * 178.60281 * 10 9 7 12 12 N 1.46924 * 108.76866 * 54.65211 * 11 10 9 13 13 C 1.34777 * 120.63110 * 126.36161 * 12 11 10 14 14 O 1.21516 * 120.00097 * 180.02562 * 13 12 11 15 15 O 1.34637 * 119.99939 * 0.02619 * 13 12 11 16 16 C 1.45204 * 116.99938 * 180.02562 * 15 13 12 17 17 C 1.53004 * 109.46905 * 180.02562 * 16 15 13 18 18 H 1.08996 * 110.27227 * 55.63637 * 17 16 15 19 19 C 1.54951 * 110.30662 * 177.83356 * 17 16 15 20 20 C 1.55307 * 100.93877 * 155.36009 * 19 17 16 21 21 C 1.54384 * 102.25287 * 325.86633 * 20 19 17 22 22 O 1.43239 * 107.58935 * 21.35607 * 21 20 19 23 23 C 1.46925 * 118.73870 * 306.39050 * 12 11 10 24 24 C 1.53038 * 109.45909 * 179.97438 * 9 7 2 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46194 * 59.99842 * 9 7 2 27 27 H 1.09002 * 109.50000 * 298.56521 * 10 9 7 28 28 H 1.08999 * 109.49863 * 58.66245 * 10 9 7 29 29 H 1.09002 * 109.59801 * 294.86696 * 11 10 9 30 30 H 1.08995 * 109.70717 * 174.50839 * 11 10 9 31 31 H 1.08998 * 109.46875 * 300.00172 * 16 15 13 32 32 H 1.08998 * 109.47337 * 60.00126 * 16 15 13 33 33 H 1.09000 * 111.12268 * 273.27609 * 19 17 16 34 34 H 1.09000 * 111.12191 * 37.44097 * 19 17 16 35 35 H 1.08994 * 110.84455 * 207.67642 * 20 19 17 36 36 H 1.09000 * 110.84709 * 84.05801 * 20 19 17 37 37 H 1.09006 * 109.82775 * 261.84282 * 21 20 19 38 38 H 1.08994 * 109.82874 * 140.87491 * 21 20 19 39 39 H 1.09003 * 109.58574 * 293.81538 * 23 12 11 40 40 H 1.08999 * 109.70315 * 173.46190 * 23 12 11 41 41 H 1.08995 * 109.49912 * 301.33422 * 24 9 7 42 42 H 1.08999 * 109.49853 * 61.40580 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 0.3712 -2.5799 1.2491 11 6 -0.4194 -3.8919 1.2282 12 7 0.5231 -5.0094 1.0808 13 6 0.5134 -6.0356 1.9544 14 8 1.2983 -6.9538 1.8219 15 8 -0.3659 -6.0435 2.9740 16 6 -0.3189 -7.1802 3.8762 17 6 -1.3839 -7.0139 4.9620 18 1 -2.3665 -6.8792 4.5098 19 6 -1.3874 -8.2435 5.9048 20 6 -1.9890 -7.6236 7.1955 21 6 -1.4286 -6.1855 7.1603 22 8 -1.0656 -5.8955 5.8053 23 6 1.4766 -4.9866 -0.0368 24 6 2.2457 -3.6622 -0.0018 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5565 -0.8903 27 1 0.9996 -2.5478 2.1392 28 1 -0.3212 -1.7383 1.2615 29 1 -1.1142 -3.8867 0.3883 30 1 -0.9737 -4.0019 2.1602 31 1 -0.5105 -8.0960 3.3170 32 1 0.6664 -7.2365 4.3388 33 1 -2.0264 -9.0358 5.5148 34 1 -0.3749 -8.6078 6.0790 35 1 -1.6390 -8.1548 8.0805 36 1 -3.0781 -7.6168 7.1513 37 1 -0.5500 -6.1153 7.8016 38 1 -2.1910 -5.4833 7.4974 39 1 0.9364 -5.0707 -0.9798 40 1 2.1754 -5.8176 0.0594 41 1 2.8876 -3.5910 -0.8799 42 1 2.8566 -3.6194 0.8999 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495701806.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:58 Heat of formation + Delta-G solvation = -136.292909 kcal Electronic energy + Delta-G solvation = -22888.112173 eV Core-core repulsion = 19446.816197 eV Total energy + Delta-G solvation = -3441.295976 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.29236 -39.49772 -37.51835 -35.81208 -33.52187 -32.48040 -31.46763 -30.74602 -30.00953 -26.53451 -25.59832 -23.14566 -22.31531 -21.98006 -21.43846 -20.55677 -18.92487 -17.51050 -17.32201 -16.68840 -16.27006 -15.96540 -15.90298 -14.95696 -14.56448 -14.29239 -13.88758 -13.56917 -13.37085 -13.04683 -12.76009 -12.65092 -12.27931 -12.17662 -12.05282 -11.70236 -11.58982 -11.53526 -11.24171 -11.14283 -10.89806 -10.64712 -10.44087 -10.35914 -10.20890 -9.93532 -9.68974 -9.53074 -9.15425 -8.91022 -8.34485 -8.03787 -5.99201 -4.05372 2.49185 3.23686 3.32949 3.37470 3.40527 3.54877 4.09516 4.16380 4.44221 4.54002 4.65608 4.87144 4.93720 5.01904 5.25392 5.30454 5.31999 5.35224 5.46661 5.55455 5.63729 5.72236 5.82371 5.84425 5.92693 6.11998 6.19510 6.43015 6.48172 6.56130 6.69426 6.84663 6.89205 7.06624 7.20305 7.35185 7.70571 7.91652 7.96472 8.08452 8.43917 8.70932 8.97617 9.59420 11.06342 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.022167 B = 0.003760 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.847063 B = 7444.219009 C = 8321.361203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.288 1.288 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.124 4.124 11 C 0.108 3.892 12 N -0.581 5.581 13 C 0.647 3.353 14 O -0.593 6.593 15 O -0.359 6.359 16 C 0.089 3.911 17 C 0.082 3.918 18 H 0.083 0.917 19 C -0.148 4.148 20 C -0.154 4.154 21 C 0.047 3.953 22 O -0.368 6.368 23 C 0.127 3.873 24 C -0.125 4.125 25 H 0.261 0.739 26 H 0.028 0.972 27 H 0.039 0.961 28 H 0.105 0.895 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.718 -14.990 10.965 19.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.162 4.162 11 C -0.013 4.013 12 N -0.320 5.320 13 C 0.401 3.599 14 O -0.485 6.485 15 O -0.273 6.273 16 C 0.014 3.986 17 C 0.024 3.976 18 H 0.101 0.899 19 C -0.186 4.186 20 C -0.192 4.192 21 C -0.030 4.030 22 O -0.287 6.287 23 C 0.006 3.994 24 C -0.163 4.163 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.123 0.877 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.576 -14.965 10.903 19.337 hybrid contribution 0.380 0.722 0.181 0.836 sum -5.196 -14.243 11.084 18.781 Atomic orbital electron populations 1.69832 1.05840 1.26558 1.50782 1.24961 0.94872 0.99037 0.95080 0.86670 0.79617 0.83194 0.78578 1.21324 1.20342 1.20346 1.21163 0.92901 0.90583 1.50454 0.92743 1.18646 0.92642 0.91666 0.94079 1.22027 1.00071 0.94635 0.99484 1.22033 0.91197 0.86850 1.01255 1.47160 1.37775 1.19941 1.27125 1.18046 0.79586 0.82789 0.79469 1.90913 1.43271 1.37578 1.76718 1.86291 1.56393 1.46691 1.37944 1.23022 0.99867 0.87072 0.88649 1.23059 0.97973 0.86050 0.90502 0.89921 1.23239 1.02871 0.97599 0.94895 1.23119 1.01494 0.96073 0.98488 1.23159 0.99703 0.95521 0.84591 1.88586 1.84611 1.38273 1.17221 1.21759 0.91041 1.00047 0.86527 1.22050 0.98964 0.94099 1.01191 0.92925 0.95363 0.94188 0.87689 0.92010 0.90607 0.90115 0.90710 0.89293 0.89776 0.89781 0.90287 0.91231 0.91225 0.91740 0.90080 0.91782 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.81 11.31 55.43 0.63 -24.19 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -13.87 8.56 -34.44 -0.29 -14.16 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.05 1.17 2.06 -91.73 -0.19 0.98 16 10 C -0.12 -2.88 5.15 -26.61 -0.14 -3.01 16 11 C 0.11 2.14 6.45 -3.71 -0.02 2.12 16 12 N -0.58 -11.42 2.97 -178.56 -0.53 -11.95 16 13 C 0.65 12.71 8.43 54.06 0.46 13.17 16 14 O -0.59 -12.50 15.55 -19.29 -0.30 -12.80 16 15 O -0.36 -6.33 8.85 -42.14 -0.37 -6.70 16 16 C 0.09 1.21 5.18 37.16 0.19 1.40 16 17 C 0.08 0.91 3.74 -25.70 -0.10 0.82 16 18 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 19 C -0.15 -1.11 6.57 -24.48 -0.16 -1.27 16 20 C -0.15 -1.03 7.02 -24.78 -0.17 -1.20 16 21 C 0.05 0.44 7.79 37.88 0.30 0.73 16 22 O -0.37 -4.99 11.04 -36.00 -0.40 -5.39 16 23 C 0.13 2.39 6.43 -3.71 -0.02 2.37 16 24 C -0.12 -2.61 5.30 -26.61 -0.14 -2.75 16 25 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.11 2.69 6.04 -51.93 -0.31 2.37 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.08 1.43 6.92 -51.93 -0.36 1.07 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.60 8.06 -51.93 -0.42 0.19 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.08 1.49 7.01 -51.93 -0.36 1.13 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 336.62 15.07 5.07 5.07 Total: -1.00 -31.08 336.62 -8.23 -39.31 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.91 Total: -0.23 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -0.39 Total: 0.77 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.10 Total: -36.14 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -1.07 Total: -24.90 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.08 -8.23 -39.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495701806.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.981 kcal (2) G-P(sol) polarization free energy of solvation -31.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds