Wall clock time and date at job start Tue Mar 31 2020 05:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00249 * 2 1 4 4 H 1.48496 * 109.47241 * 240.00280 * 3 2 1 5 5 H 1.48511 * 109.46759 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47357 * 119.99611 * 3 2 1 7 7 C 1.37879 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99431 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00317 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47330 * 180.02562 * 9 7 2 11 11 C 1.46507 * 119.99962 * 269.99747 * 10 9 7 12 12 C 1.52991 * 109.47158 * 269.99975 * 11 10 9 13 13 C 1.52996 * 117.49996 * 243.62022 * 12 11 10 14 14 C 1.53001 * 60.00149 * 252.51183 * 13 12 11 15 15 C 1.34773 * 120.00184 * 89.99962 * 10 9 7 16 16 O 1.21516 * 120.00072 * 0.02562 * 15 10 9 17 17 O 1.34637 * 120.00436 * 180.02562 * 15 10 9 18 18 C 1.45196 * 117.00542 * 180.02562 * 17 15 10 19 19 C 1.52998 * 109.47510 * 180.02562 * 18 17 15 20 20 H 1.09002 * 109.87039 * 54.29798 * 19 18 17 21 21 C 1.54104 * 109.88136 * 175.30680 * 19 18 17 22 22 C 1.54805 * 104.18715 * 121.60340 * 21 19 18 23 23 C 1.54993 * 102.09764 * 20.87963 * 22 21 19 24 24 O 1.43741 * 110.00290 * 293.21064 * 19 18 17 25 25 H 0.97001 * 119.99750 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47212 * 60.00187 * 9 7 2 27 27 H 1.09000 * 109.47058 * 300.00438 * 9 7 2 28 28 H 1.09001 * 109.46680 * 30.00377 * 11 10 9 29 29 H 1.09002 * 109.46636 * 149.99789 * 11 10 9 30 30 H 1.09005 * 115.55058 * 29.33458 * 12 11 10 31 31 H 1.09000 * 117.50334 * 0.02562 * 13 12 11 32 32 H 1.09006 * 117.50120 * 145.02027 * 13 12 11 33 33 H 1.08998 * 117.49460 * 252.50886 * 14 13 12 34 34 H 1.08992 * 117.49503 * 107.49215 * 14 13 12 35 35 H 1.08997 * 109.47244 * 59.99427 * 18 17 15 36 36 H 1.09004 * 109.47019 * 300.00225 * 18 17 15 37 37 H 1.09004 * 110.48326 * 240.27942 * 21 19 18 38 38 H 1.09003 * 110.48376 * 2.92383 * 21 19 18 39 39 H 1.09004 * 110.90856 * 139.08289 * 22 21 19 40 40 H 1.09008 * 110.90524 * 262.68042 * 22 21 19 41 41 H 1.09000 * 110.61715 * 81.47543 * 23 22 21 42 42 H 1.08999 * 110.61939 * 204.47512 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.6790 -4.1694 -1.2693 12 6 1.7484 -5.3006 -1.7109 13 6 2.3403 -6.7086 -1.7993 14 6 2.0087 -5.9366 -3.0779 15 6 2.6410 -4.1248 1.1666 16 8 2.2458 -3.6634 2.2190 17 8 3.5163 -5.1478 1.1667 18 6 3.9442 -5.6493 2.4603 19 6 4.9309 -6.8013 2.2599 20 1 5.7516 -6.4790 1.6190 21 6 5.4811 -7.2633 3.6232 22 6 5.0955 -8.7606 3.7003 23 6 4.8725 -9.1158 2.2082 24 8 4.2601 -7.9257 1.6667 25 1 -0.4850 0.8401 -0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.6868 -3.3877 -2.0289 29 1 3.6885 -4.5594 -1.1389 30 1 0.7114 -5.2096 -1.3875 31 1 3.3927 -6.8293 -1.5424 32 1 1.6929 -7.5444 -1.5337 33 1 1.1431 -6.2644 -3.6535 34 1 2.8430 -5.5492 -3.6625 35 1 3.0773 -6.0055 3.0168 36 1 4.4298 -4.8484 3.0180 37 1 6.5643 -7.1460 3.6570 38 1 5.0105 -6.7059 4.4332 39 1 5.9088 -9.3504 4.1232 40 1 4.1787 -8.8972 4.2739 41 1 5.8236 -9.3164 1.7150 42 1 4.2020 -9.9699 2.1130 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495797266.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:05 Heat of formation + Delta-G solvation = -103.520039 kcal Electronic energy + Delta-G solvation = -23024.102880 eV Core-core repulsion = 19584.228043 eV Total energy + Delta-G solvation = -3439.874837 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.95817 -39.25948 -37.31459 -35.88137 -34.31944 -32.52736 -32.35462 -30.83550 -27.83400 -26.38234 -25.32585 -23.06817 -22.18396 -22.02466 -21.12511 -20.59876 -19.50769 -17.40439 -16.83287 -16.60207 -16.28348 -15.97740 -15.45707 -15.03735 -14.96990 -14.42872 -13.98313 -13.84675 -13.63700 -13.07852 -12.79247 -12.21621 -12.05423 -12.02654 -11.83167 -11.62575 -11.44188 -11.29644 -11.22842 -11.15080 -10.93788 -10.87495 -10.57617 -10.23099 -10.12228 -10.00061 -9.79776 -9.73469 -9.61140 -9.35832 -8.41630 -7.71509 -6.02904 -4.07641 2.91480 3.34060 3.37971 3.41451 3.67587 3.75159 4.10778 4.30467 4.39694 4.49039 4.64847 4.74203 4.97764 5.05855 5.15770 5.21685 5.27389 5.31751 5.34367 5.41316 5.43910 5.52514 5.58046 5.68886 5.76731 5.78511 5.88758 5.89818 6.08934 6.19664 6.23362 6.40744 6.62542 6.71896 6.82739 7.16576 7.47415 7.53625 7.93322 8.23099 8.42220 8.92095 9.24555 9.57696 11.05169 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017679 B = 0.004567 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.426904 B = 6128.807906 C = 7279.098857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.260 3.740 10 N -0.574 5.574 11 C 0.149 3.851 12 C -0.164 4.164 13 C -0.170 4.170 14 C -0.181 4.181 15 C 0.642 3.358 16 O -0.575 6.575 17 O -0.368 6.368 18 C 0.090 3.910 19 C 0.080 3.920 20 H 0.078 0.922 21 C -0.150 4.150 22 C -0.155 4.155 23 C 0.043 3.957 24 O -0.360 6.360 25 H 0.264 0.736 26 H 0.040 0.960 27 H 0.045 0.955 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.398 -17.822 1.436 20.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.568 4.568 8 H 0.076 0.924 9 C 0.142 3.858 10 N -0.311 5.311 11 C 0.025 3.975 12 C -0.183 4.183 13 C -0.207 4.207 14 C -0.219 4.219 15 C 0.395 3.605 16 O -0.464 6.464 17 O -0.283 6.283 18 C 0.014 3.986 19 C 0.022 3.978 20 H 0.096 0.904 21 C -0.187 4.187 22 C -0.193 4.193 23 C -0.034 4.034 24 O -0.279 6.279 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.122 0.878 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.955 -17.547 1.650 20.242 hybrid contribution 0.560 0.944 0.269 1.129 sum 10.515 -16.604 1.919 19.747 Atomic orbital electron populations 1.69923 1.05976 1.27171 1.50274 1.24916 0.94881 0.99157 0.95009 0.86540 0.79503 0.82631 0.78633 1.20195 1.21160 1.20213 1.21422 0.93441 0.90619 1.51335 0.92386 1.19354 0.86636 0.80972 0.98822 1.47211 1.46836 1.35243 1.01855 1.20977 0.95653 0.94366 0.86466 1.22843 1.01107 0.94524 0.99864 1.22932 1.01798 0.94867 1.01087 1.22901 1.03179 1.04999 0.90799 1.18135 0.78537 0.78536 0.85254 1.90946 1.61408 1.63448 1.30570 1.86243 1.59342 1.48852 1.33839 1.22974 0.97885 0.94394 0.83350 1.22795 0.94261 0.86858 0.93921 0.90402 1.22924 1.01953 0.96528 0.97327 1.23143 1.02601 0.95700 0.97855 1.23565 0.98308 0.89447 0.92062 1.89031 1.58630 1.13783 1.66476 0.92618 0.94175 0.93678 0.89630 0.90949 0.87774 0.88652 0.89563 0.89235 0.88961 0.90988 0.90352 0.89975 0.89818 0.90149 0.90308 0.92217 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.53 -15.21 9.39 -34.44 -0.32 -15.54 16 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.26 6.96 5.16 -5.20 -0.03 6.93 16 10 N -0.57 -13.12 2.46 -180.87 -0.44 -13.57 16 11 C 0.15 2.76 5.70 -4.04 -0.02 2.74 16 12 C -0.16 -2.67 6.01 -90.63 -0.54 -3.22 16 13 C -0.17 -2.39 10.18 -26.73 -0.27 -2.67 16 14 C -0.18 -2.38 10.25 -26.73 -0.27 -2.66 16 15 C 0.64 14.90 8.39 54.05 0.45 15.35 16 16 O -0.57 -15.26 15.71 -19.29 -0.30 -15.57 16 17 O -0.37 -7.08 9.04 -42.18 -0.38 -7.46 16 18 C 0.09 1.39 4.93 37.16 0.18 1.58 16 19 C 0.08 0.96 3.71 -26.16 -0.10 0.86 16 20 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 21 C -0.15 -1.29 6.64 -25.20 -0.17 -1.46 16 22 C -0.16 -1.18 7.15 -24.73 -0.18 -1.35 16 23 C 0.04 0.38 7.72 38.21 0.29 0.68 16 24 O -0.36 -4.78 11.19 -36.08 -0.40 -5.18 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.04 1.07 8.07 -51.93 -0.42 0.66 16 27 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 28 H 0.09 1.58 8.07 -51.93 -0.42 1.16 16 29 H 0.07 1.25 7.11 -51.93 -0.37 0.88 16 30 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 31 H 0.10 1.35 8.03 -51.93 -0.42 0.93 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.71 7.70 -51.93 -0.40 0.31 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.61 8.14 -51.92 -0.42 0.18 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 353.44 15.07 5.33 5.33 Total: -1.00 -33.47 353.44 -8.59 -42.06 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -7.03 Total: 0.42 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -1.07 Total: 2.95 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.29 Total: -39.50 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -1.09 Total: -28.21 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.47 -8.59 -42.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495797266.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.462 kcal (2) G-P(sol) polarization free energy of solvation -33.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds