Wall clock time and date at job start Tue Mar 31 2020 05:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99789 * 2 1 4 4 H 1.48498 * 109.46744 * 269.99631 * 3 2 1 5 5 H 1.48502 * 109.47356 * 29.99681 * 3 2 1 6 6 H 1.48502 * 109.46955 * 149.99826 * 3 2 1 7 7 C 1.37875 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00178 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99960 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47236 * 179.97438 * 9 7 2 11 11 C 1.46495 * 120.00131 * 269.99964 * 10 9 7 12 12 C 1.53007 * 109.47222 * 270.00026 * 11 10 9 13 13 C 1.53002 * 117.49584 * 243.74627 * 12 11 10 14 14 C 1.53006 * 117.49767 * 175.08519 * 12 11 10 15 15 C 1.34776 * 120.00199 * 90.00093 * 10 9 7 16 16 O 1.21509 * 119.99565 * 359.97438 * 15 10 9 17 17 O 1.34637 * 120.00270 * 180.02562 * 15 10 9 18 18 C 1.45199 * 116.99709 * 179.97438 * 17 15 10 19 19 C 1.53002 * 109.46706 * 180.02562 * 18 17 15 20 20 H 1.09004 * 109.87004 * 306.00427 * 19 18 17 21 21 C 1.54106 * 109.87837 * 185.00177 * 19 18 17 22 22 C 1.54807 * 104.18688 * 238.54392 * 21 19 18 23 23 C 1.54994 * 102.09494 * 339.12124 * 22 21 19 24 24 O 1.43739 * 109.88223 * 67.16924 * 19 18 17 25 25 H 0.97006 * 120.00105 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47170 * 59.99441 * 9 7 2 27 27 H 1.09004 * 109.47475 * 299.99713 * 9 7 2 28 28 H 1.09003 * 109.47291 * 29.99652 * 11 10 9 29 29 H 1.09003 * 109.47706 * 149.99955 * 11 10 9 30 30 H 1.09001 * 115.54856 * 29.41760 * 12 11 10 31 31 H 1.09002 * 117.50235 * 359.97438 * 13 12 11 32 32 H 1.09000 * 117.49654 * 145.02161 * 13 12 11 33 33 H 1.08995 * 117.49710 * 214.97722 * 14 12 11 34 34 H 1.08996 * 117.49843 * 359.97438 * 14 12 11 35 35 H 1.08997 * 109.47080 * 60.00382 * 18 17 15 36 36 H 1.08997 * 109.47711 * 299.99902 * 18 17 15 37 37 H 1.08997 * 110.48714 * 357.22053 * 21 19 18 38 38 H 1.09000 * 110.48945 * 119.86925 * 21 19 18 39 39 H 1.09005 * 110.90346 * 97.31858 * 22 21 19 40 40 H 1.09000 * 110.90998 * 220.91594 * 22 21 19 41 41 H 1.08998 * 110.61564 * 278.52047 * 23 22 21 42 42 H 1.08994 * 110.75808 * 155.58946 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6791 -4.1694 -1.2681 12 6 1.7484 -5.3006 -1.7098 13 6 2.3397 -6.7092 -1.7953 14 6 2.0101 -5.9380 -3.0760 15 6 2.6410 -4.1248 1.1677 16 8 2.2465 -3.6627 2.2200 17 8 3.5163 -5.1479 1.1677 18 6 3.9450 -5.6485 2.4615 19 6 4.9316 -6.8006 2.2610 20 1 4.4892 -7.5590 1.6150 21 6 5.2966 -7.4211 3.6236 22 6 6.8347 -7.2685 3.7102 23 6 7.2282 -7.0952 2.2211 24 8 6.1484 -6.3062 1.6770 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5570 -0.8897 27 1 0.6241 -2.5568 0.8903 28 1 2.6868 -3.3878 -2.0278 29 1 3.6886 -4.5594 -1.1379 30 1 0.7111 -5.2089 -1.3876 31 1 3.3918 -6.8299 -1.5373 32 1 1.6913 -7.5441 -1.5297 33 1 1.1450 -6.2660 -3.6523 34 1 2.8450 -5.5511 -3.6602 35 1 3.0785 -6.0045 3.0186 36 1 4.4310 -4.8473 3.0184 37 1 4.8128 -6.8749 4.4334 38 1 5.0155 -8.4739 3.6510 39 1 7.1060 -6.3859 4.2895 40 1 7.2913 -8.1640 4.1316 41 1 7.2844 -8.0635 1.7239 42 1 8.1754 -6.5634 2.1312 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495797267.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:08 Heat of formation + Delta-G solvation = -103.624680 kcal Electronic energy + Delta-G solvation = -22979.317339 eV Core-core repulsion = 19539.437964 eV Total energy + Delta-G solvation = -3439.879375 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.95845 -39.25978 -37.34827 -35.88951 -34.32753 -32.52316 -32.35190 -30.83108 -27.83426 -26.38941 -25.32535 -23.06455 -22.18507 -22.10571 -21.12317 -20.62928 -19.51875 -17.39777 -16.85117 -16.55351 -16.37459 -15.90387 -15.50597 -15.01462 -14.97602 -14.44166 -14.03339 -13.84155 -13.64198 -13.08609 -12.79159 -12.21822 -12.08471 -11.99930 -11.82245 -11.62766 -11.45377 -11.31346 -11.28703 -11.16534 -10.94477 -10.84602 -10.58640 -10.24819 -10.12305 -10.01410 -9.80402 -9.76267 -9.59624 -9.37688 -8.41190 -7.71689 -6.02395 -4.06783 2.91319 3.33300 3.39401 3.45227 3.68494 3.74871 4.05021 4.30747 4.39542 4.49455 4.65037 4.74071 4.97934 5.03940 5.12033 5.21247 5.22531 5.32365 5.34285 5.37649 5.44295 5.53355 5.56967 5.68764 5.74291 5.79219 5.83062 5.90187 6.05747 6.11553 6.22097 6.33542 6.60205 6.71498 6.82900 7.16207 7.46989 7.53884 7.94238 8.23768 8.42023 8.93458 9.24674 9.58672 11.05694 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014710 B = 0.004785 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.055029 B = 5850.059137 C = 7011.586030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.260 3.740 10 N -0.573 5.573 11 C 0.148 3.852 12 C -0.163 4.163 13 C -0.177 4.177 14 C -0.179 4.179 15 C 0.642 3.358 16 O -0.574 6.574 17 O -0.368 6.368 18 C 0.089 3.911 19 C 0.080 3.920 20 H 0.079 0.921 21 C -0.149 4.149 22 C -0.155 4.155 23 C 0.043 3.957 24 O -0.362 6.362 25 H 0.263 0.737 26 H 0.040 0.960 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.504 -17.725 1.433 20.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.567 4.567 8 H 0.077 0.923 9 C 0.142 3.858 10 N -0.311 5.311 11 C 0.024 3.976 12 C -0.182 4.182 13 C -0.214 4.214 14 C -0.217 4.217 15 C 0.395 3.605 16 O -0.464 6.464 17 O -0.283 6.283 18 C 0.014 3.986 19 C 0.022 3.978 20 H 0.097 0.903 21 C -0.187 4.187 22 C -0.193 4.193 23 C -0.034 4.034 24 O -0.281 6.281 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.252 -17.294 1.652 20.172 hybrid contribution 0.336 0.763 0.247 0.870 sum 10.588 -16.531 1.899 19.723 Atomic orbital electron populations 1.69935 1.05972 1.27048 1.50469 1.24913 0.94879 0.99174 0.95017 0.86479 0.79867 0.82961 0.78029 1.20584 1.21094 1.19878 1.21467 0.93531 0.90597 1.51084 0.92293 1.19364 0.86626 0.81033 0.98789 1.47206 1.46857 1.35225 1.01848 1.20995 0.95739 0.94375 0.86515 1.22874 1.01123 0.94323 0.99922 1.22980 1.01681 0.95016 1.01706 1.22905 1.03236 1.04766 0.90747 1.18135 0.78409 0.78657 0.85252 1.90943 1.61497 1.63338 1.30577 1.86244 1.59231 1.48957 1.33836 1.22979 0.96466 0.95845 0.83353 1.22798 0.86136 0.94868 0.94022 0.90350 1.22923 0.96551 1.01918 0.97323 1.23141 0.95267 1.03028 0.97866 1.23567 0.91799 0.95971 0.92055 1.89036 1.14725 1.57428 1.66875 0.92697 0.94197 0.93662 0.89579 0.90715 0.87698 0.88706 0.89566 0.89164 0.88842 0.90421 0.90904 0.89815 0.89985 0.90262 0.90125 0.92220 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.53 -15.28 9.39 -34.44 -0.32 -15.60 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.26 6.94 5.16 -5.20 -0.03 6.92 16 10 N -0.57 -13.11 2.46 -180.86 -0.44 -13.56 16 11 C 0.15 2.73 5.69 -4.04 -0.02 2.70 16 12 C -0.16 -2.57 6.01 -90.61 -0.54 -3.12 16 13 C -0.18 -2.34 10.18 -26.69 -0.27 -2.61 16 14 C -0.18 -2.28 10.26 -26.69 -0.27 -2.55 16 15 C 0.64 14.90 8.39 54.05 0.45 15.36 16 16 O -0.57 -15.26 15.71 -19.28 -0.30 -15.56 16 17 O -0.37 -7.09 9.04 -42.13 -0.38 -7.47 16 18 C 0.09 1.39 4.92 37.16 0.18 1.58 16 19 C 0.08 0.97 3.72 -26.15 -0.10 0.87 16 20 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 21 C -0.15 -1.29 6.64 -25.20 -0.17 -1.46 16 22 C -0.16 -1.21 7.15 -24.73 -0.18 -1.39 16 23 C 0.04 0.40 7.72 38.21 0.29 0.69 16 24 O -0.36 -5.00 11.18 -35.99 -0.40 -5.40 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.04 1.06 8.07 -51.93 -0.42 0.64 16 27 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 28 H 0.09 1.60 8.07 -51.93 -0.42 1.18 16 29 H 0.07 1.32 7.11 -51.93 -0.37 0.95 16 30 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 31 H 0.09 1.25 8.03 -51.93 -0.42 0.83 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.08 0.71 7.70 -51.93 -0.40 0.31 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 353.44 15.07 5.33 5.33 Total: -1.00 -33.76 353.44 -8.59 -42.34 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -7.03 Total: 0.07 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -1.07 Total: 3.08 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.29 Total: -39.55 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -1.09 Total: -28.43 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.76 -8.59 -42.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495797267.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.281 kcal (2) G-P(sol) polarization free energy of solvation -33.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds