Wall clock time and date at job start Tue Mar 31 2020 05:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99858 * 2 1 4 4 H 1.48502 * 109.47081 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47252 * 300.00122 * 3 2 1 6 6 H 1.48498 * 109.47230 * 60.00036 * 3 2 1 7 7 C 1.37870 * 120.00375 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00642 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.53037 * 109.46290 * 180.02562 * 9 7 2 11 11 C 1.53196 * 109.31207 * 178.63070 * 10 9 7 12 12 N 1.46923 * 108.77510 * 54.63849 * 11 10 9 13 13 C 1.34777 * 120.63273 * 126.37051 * 12 11 10 14 14 O 1.21507 * 120.00243 * 359.97438 * 13 12 11 15 15 O 1.34644 * 119.99827 * 179.97438 * 13 12 11 16 16 C 1.45196 * 116.99750 * 179.97438 * 15 13 12 17 17 C 1.53176 * 109.54641 * 269.82503 * 16 15 13 18 18 C 1.53103 * 109.16016 * 183.24183 * 17 16 15 19 19 O 1.42912 * 109.48603 * 57.47145 * 18 17 16 20 20 C 1.42899 * 114.09773 * 298.89080 * 19 18 17 21 21 C 1.53094 * 109.41637 * 61.15796 * 20 19 18 22 22 C 1.46933 * 118.73771 * 306.63640 * 12 11 10 23 23 C 1.52764 * 109.00223 * 53.31664 * 22 12 11 24 24 H 0.97005 * 119.99861 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46407 * 299.97786 * 9 7 2 26 26 H 1.08996 * 109.49891 * 58.68149 * 10 9 7 27 27 H 1.08999 * 109.52642 * 298.59663 * 10 9 7 28 28 H 1.08994 * 109.58890 * 294.84679 * 11 10 9 29 29 H 1.09008 * 109.70026 * 174.49159 * 11 10 9 30 30 H 1.09000 * 109.54709 * 30.00062 * 16 15 13 31 31 H 1.09003 * 109.52078 * 303.05599 * 17 16 15 32 32 H 1.09002 * 109.52189 * 63.24682 * 17 16 15 33 33 H 1.08995 * 109.40771 * 297.49339 * 18 17 16 34 34 H 1.09001 * 109.49140 * 177.50648 * 18 17 16 35 35 H 1.09003 * 109.47746 * 301.17589 * 20 19 18 36 36 H 1.08997 * 109.48804 * 181.14676 * 20 19 18 37 37 H 1.08998 * 109.52259 * 182.48965 * 21 20 19 38 38 H 1.08995 * 109.57468 * 62.32763 * 21 20 19 39 39 H 1.08995 * 109.58414 * 173.14825 * 22 12 11 40 40 H 1.08998 * 109.58818 * 293.57668 * 22 12 11 41 41 H 1.09006 * 109.56079 * 185.55200 * 23 22 12 42 42 H 1.09000 * 109.36254 * 65.49925 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2459 -3.6621 -0.0005 11 6 1.4768 -4.9866 0.0340 12 7 0.5227 -5.0086 -1.0831 13 6 0.5125 -6.0343 -1.9573 14 8 1.2977 -6.9523 -1.8261 15 8 -0.3677 -6.0418 -2.9762 16 6 -0.3212 -7.1778 -3.8791 17 6 0.6455 -6.8792 -5.0292 18 6 0.6267 -8.0480 -6.0178 19 8 -0.7070 -8.2525 -6.4889 20 6 -1.6443 -8.5827 -5.4621 21 6 -1.7184 -7.4344 -4.4523 22 6 -0.4163 -3.8884 -1.2324 23 6 0.3704 -2.5790 -1.2496 24 1 -0.4850 0.8401 -0.0004 25 1 0.6252 -2.5571 0.8899 26 1 2.8882 -3.5914 0.8772 27 1 2.8563 -3.6194 -0.9025 28 1 0.9372 -5.0713 0.9772 29 1 2.1738 -5.8189 -0.0643 30 1 0.0184 -8.0606 -3.3374 31 1 0.3343 -5.9674 -5.5391 32 1 1.6532 -6.7508 -4.6339 33 1 0.9780 -8.9507 -5.5181 34 1 1.2794 -7.8218 -6.8610 35 1 -1.3225 -9.4924 -4.9551 36 1 -2.6276 -8.7416 -5.9047 37 1 -2.3996 -7.7028 -3.6448 38 1 -2.0792 -6.5339 -4.9491 39 1 -0.9664 -3.9949 -2.1673 40 1 -1.1134 -3.8817 -0.3945 41 1 -0.3222 -1.7373 -1.2608 42 1 0.9980 -2.5461 -2.1401 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496919874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:42 Heat of formation + Delta-G solvation = -141.163977 kcal Electronic energy + Delta-G solvation = -23192.145865 eV Core-core repulsion = 19750.638664 eV Total energy + Delta-G solvation = -3441.507201 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.54160 -39.25003 -37.56467 -35.95910 -33.64074 -32.78565 -31.40149 -31.13260 -30.12079 -26.43554 -24.99271 -23.84829 -23.09609 -22.36370 -20.84233 -20.40978 -19.03972 -17.56953 -17.14999 -16.37956 -16.32722 -16.04565 -15.74352 -15.01595 -14.58603 -14.44672 -14.08622 -13.82773 -13.33802 -13.20679 -12.98161 -12.68428 -12.65103 -12.43666 -11.78804 -11.69372 -11.57023 -11.32590 -11.25015 -10.97902 -10.69428 -10.64044 -10.43650 -10.34268 -10.22087 -10.02882 -9.91530 -9.60520 -9.21301 -8.96530 -8.40623 -8.11885 -6.04803 -4.11003 2.41349 3.14463 3.26439 3.35074 3.38932 3.58820 4.12756 4.39692 4.48593 4.53205 4.68045 4.88741 4.95155 5.15033 5.20065 5.25253 5.38887 5.40505 5.57455 5.64138 5.73265 5.75817 5.83276 5.88090 5.96602 6.06400 6.10980 6.35655 6.41147 6.55157 6.63311 6.82114 6.88808 6.99797 7.11822 7.27215 7.64804 7.83964 7.89555 8.02134 8.37956 8.62750 8.92566 9.54364 11.00822 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.028465 B = 0.003643 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.436443 B = 7684.273837 C = 7975.987602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.056 0.944 9 C 0.047 3.953 10 C -0.125 4.125 11 C 0.127 3.873 12 N -0.581 5.581 13 C 0.646 3.354 14 O -0.590 6.590 15 O -0.360 6.360 16 C 0.107 3.893 17 C -0.175 4.175 18 C 0.067 3.933 19 O -0.382 6.382 20 C 0.067 3.933 21 C -0.154 4.154 22 C 0.109 3.891 23 C -0.125 4.125 24 H 0.260 0.740 25 H 0.029 0.971 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.100 0.900 35 H 0.054 0.946 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.106 0.894 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.517 -14.535 -8.235 17.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.074 0.926 9 C 0.029 3.971 10 C -0.163 4.163 11 C 0.006 3.994 12 N -0.320 5.320 13 C 0.400 3.600 14 O -0.482 6.482 15 O -0.275 6.275 16 C 0.051 3.949 17 C -0.212 4.212 18 C -0.010 4.010 19 O -0.301 6.301 20 C -0.010 4.010 21 C -0.192 4.192 22 C -0.013 4.013 23 C -0.163 4.163 24 H 0.070 0.930 25 H 0.047 0.953 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.118 0.882 35 H 0.072 0.928 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.124 0.876 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.508 -14.693 -8.430 17.300 hybrid contribution 0.567 1.039 0.359 1.237 sum -2.941 -13.654 -8.071 16.132 Atomic orbital electron populations 1.69846 1.05855 1.26388 1.50938 1.24960 0.94871 0.99086 0.95053 0.86558 0.80177 0.83827 0.77567 1.19833 1.21056 1.21040 1.21232 0.92986 0.90528 1.50249 0.92616 1.18657 0.92652 0.91740 0.94063 1.22047 0.98951 0.94050 1.01221 1.21777 0.91026 1.00064 0.86562 1.47184 1.37873 1.19837 1.27112 1.18066 0.79723 0.82793 0.79435 1.90903 1.43056 1.37486 1.76731 1.86334 1.56353 1.46898 1.37882 1.22538 0.96081 0.87912 0.88346 1.22661 1.01102 1.00685 0.96801 1.22561 0.84045 0.96517 0.97883 1.87940 1.18357 1.90452 1.33357 1.22568 0.93982 0.95476 0.89013 1.22341 0.95972 1.01045 0.99842 1.21942 0.91319 0.86842 1.01196 1.21963 1.00148 0.94679 0.99514 0.93005 0.95322 0.91730 0.92835 0.91706 0.90058 0.89595 0.89904 0.89845 0.92762 0.88165 0.92801 0.87968 0.89855 0.89609 0.90794 0.91936 0.87601 0.94285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.37 11.31 55.43 0.63 -23.74 16 2 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 3 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -13.56 8.56 -34.44 -0.29 -13.85 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.05 1.12 2.07 -91.73 -0.19 0.93 16 10 C -0.12 -2.52 5.30 -26.61 -0.14 -2.66 16 11 C 0.13 2.30 6.44 -3.71 -0.02 2.28 16 12 N -0.58 -10.93 2.98 -178.82 -0.53 -11.46 16 13 C 0.65 12.05 8.41 54.06 0.45 12.50 16 14 O -0.59 -11.89 15.01 -19.28 -0.29 -12.18 16 15 O -0.36 -5.93 8.53 -40.34 -0.34 -6.27 16 16 C 0.11 1.41 2.54 -26.55 -0.07 1.34 16 17 C -0.17 -2.11 5.79 -26.59 -0.15 -2.26 16 18 C 0.07 0.66 6.84 37.21 0.25 0.91 16 19 O -0.38 -4.12 10.77 -35.23 -0.38 -4.50 16 20 C 0.07 0.58 6.84 37.21 0.25 0.83 16 21 C -0.15 -1.57 5.80 -26.59 -0.15 -1.73 16 22 C 0.11 2.05 6.42 -3.93 -0.03 2.03 16 23 C -0.12 -2.79 5.14 -26.83 -0.14 -2.93 16 24 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.08 1.45 7.00 -51.92 -0.36 1.08 16 30 H 0.09 1.18 7.16 -51.93 -0.37 0.81 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 1.31 6.93 -51.93 -0.36 0.95 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.11 2.63 6.03 -51.93 -0.31 2.32 16 42 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 332.06 15.07 5.00 5.00 Total: -1.00 -29.46 332.06 -8.12 -37.59 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -6.87 Total: 0.87 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -0.32 Total: -1.06 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.09 Total: -35.20 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -1.01 Total: -22.96 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.46 -8.12 -37.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496919874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.576 kcal (2) G-P(sol) polarization free energy of solvation -29.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds