Wall clock time and date at job start Tue Mar 31 2020 05:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99966 * 2 1 4 4 H 1.48497 * 109.46934 * 270.00199 * 3 2 1 5 5 H 1.48507 * 109.47063 * 29.99686 * 3 2 1 6 6 H 1.48494 * 109.47415 * 149.99739 * 3 2 1 7 7 C 1.37877 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99579 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00123 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46955 * 180.02562 * 9 7 2 11 11 C 1.53042 * 109.45831 * 295.03078 * 10 9 7 12 12 C 1.53196 * 109.30928 * 178.60309 * 11 10 9 13 13 N 1.46925 * 108.76434 * 54.65286 * 12 11 10 14 14 C 1.34783 * 120.62924 * 126.40966 * 13 12 11 15 15 O 1.21276 * 120.00046 * 175.90603 * 14 13 12 16 16 C 1.50708 * 119.99929 * 355.89958 * 14 13 12 17 17 O 1.42896 * 110.79878 * 57.94933 * 16 14 13 18 18 C 1.54805 * 110.90453 * 181.61817 * 16 14 13 19 19 C 1.54097 * 104.18535 * 139.08199 * 18 16 14 20 20 O 1.43749 * 107.29637 * 2.02724 * 19 18 16 21 21 C 1.44382 * 106.97310 * 333.48711 * 20 19 18 22 22 C 1.46926 * 118.74372 * 306.38547 * 13 12 11 23 23 C 1.53042 * 109.45714 * 174.97874 * 10 9 7 24 24 H 0.96996 * 119.99909 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46741 * 60.00757 * 9 7 2 26 26 H 1.08994 * 109.47578 * 300.00478 * 9 7 2 27 27 H 1.08993 * 109.45663 * 55.00124 * 10 9 7 28 28 H 1.09006 * 109.49518 * 298.56300 * 11 10 9 29 29 H 1.08993 * 109.49999 * 58.66252 * 11 10 9 30 30 H 1.09001 * 109.59592 * 294.86615 * 12 11 10 31 31 H 1.09002 * 109.70381 * 174.50368 * 12 11 10 32 32 H 0.96695 * 114.00708 * 309.21086 * 17 16 14 33 33 H 1.09007 * 110.48731 * 257.75626 * 18 16 14 34 34 H 1.09000 * 110.49124 * 20.40213 * 18 16 14 35 35 H 1.09004 * 109.87905 * 242.60350 * 19 18 16 36 36 H 1.09008 * 109.88318 * 121.45243 * 19 18 16 37 37 H 1.09001 * 110.61620 * 281.56085 * 21 20 19 38 38 H 1.08995 * 110.75446 * 158.62741 * 21 20 19 39 39 H 1.09008 * 109.58514 * 293.82180 * 22 13 12 40 40 H 1.08999 * 109.59107 * 173.40058 * 22 13 12 41 41 H 1.09000 * 109.49475 * 301.33388 * 23 10 9 42 42 H 1.08997 * 109.50074 * 61.43293 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6621 0.0027 11 6 3.0408 -3.6539 -1.3047 12 6 4.0591 -4.7983 -1.2853 13 7 3.3503 -6.0572 -1.0182 14 6 3.4920 -7.1135 -1.8433 15 8 2.9613 -8.1698 -1.5727 16 6 4.3097 -6.9817 -3.1024 17 8 5.6470 -6.5796 -2.7992 18 6 4.2986 -8.3030 -3.9090 19 6 4.1601 -7.8492 -5.3752 20 8 4.1490 -6.4118 -5.3784 21 6 3.6453 -5.9912 -4.0923 22 6 2.4846 -6.1431 0.1658 23 6 1.4842 -4.9836 0.1302 24 1 -0.4850 0.8400 -0.0004 25 1 0.6242 -2.5575 -0.8881 26 1 0.6247 -2.5563 0.8918 27 1 2.9294 -3.5542 0.8445 28 1 2.3599 -3.7868 -2.1456 29 1 3.5640 -2.7032 -1.4064 30 1 4.7949 -4.6196 -0.5012 31 1 4.5616 -4.8595 -2.2507 32 1 5.7038 -5.8047 -2.2236 33 1 5.2326 -8.8461 -3.7644 34 1 3.4484 -8.9202 -3.6187 35 1 3.2277 -8.2280 -5.7939 36 1 5.0058 -8.2146 -5.9578 37 1 2.5597 -6.0830 -4.0566 38 1 3.9501 -4.9678 -3.8740 39 1 3.0920 -6.0742 1.0684 40 1 1.9461 -7.0908 0.1568 41 1 0.8995 -4.9793 1.0501 42 1 0.8182 -5.1037 -0.7242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569343982.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:29 Heat of formation + Delta-G solvation = -129.130027 kcal Electronic energy + Delta-G solvation = -23693.796921 eV Core-core repulsion = 20252.811551 eV Total energy + Delta-G solvation = -3440.985370 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.21349 -39.00196 -37.52284 -36.46084 -34.11310 -32.23444 -31.50251 -31.06762 -29.19616 -28.14386 -25.11504 -23.50411 -23.28111 -22.60293 -21.27492 -20.26395 -19.23011 -17.88494 -16.97208 -16.74216 -16.38345 -15.96257 -15.49098 -14.98035 -14.90366 -14.56523 -14.08220 -13.92115 -13.58066 -13.23613 -13.06356 -12.99883 -12.79534 -12.37616 -12.14722 -11.93935 -11.86089 -11.47624 -11.31125 -11.16926 -11.00207 -10.86134 -10.76843 -10.50460 -10.25188 -9.92380 -9.81271 -9.54641 -9.38655 -9.07236 -8.59846 -8.42270 -6.06790 -4.09562 2.28964 2.76295 3.26398 3.33927 3.35436 3.62797 3.75723 3.93162 4.36417 4.39292 4.48765 4.72110 4.86308 4.93784 5.16627 5.22064 5.23936 5.29678 5.35108 5.36952 5.47344 5.50655 5.56927 5.68796 5.73861 5.82097 5.88053 6.17173 6.22190 6.35581 6.46168 6.51868 6.79428 6.83830 6.97426 7.11143 7.25772 7.58089 7.71145 7.91539 7.91849 8.33297 8.96826 9.55009 11.04350 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.023481 B = 0.004281 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.142839 B = 6538.354864 C = 7121.232887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.119 4.119 12 C 0.081 3.919 13 N -0.599 5.599 14 C 0.500 3.500 15 O -0.534 6.534 16 C 0.086 3.914 17 O -0.538 6.538 18 C -0.134 4.134 19 C 0.048 3.952 20 O -0.365 6.365 21 C 0.029 3.971 22 C 0.111 3.889 23 C -0.130 4.130 24 H 0.261 0.739 25 H 0.016 0.984 26 H 0.017 0.983 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.382 0.618 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.371 -13.522 -5.673 16.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.099 4.099 11 C -0.157 4.157 12 C -0.041 4.041 13 N -0.333 5.333 14 C 0.286 3.714 15 O -0.411 6.411 16 C 0.041 3.959 17 O -0.349 6.349 18 C -0.172 4.172 19 C -0.029 4.029 20 O -0.283 6.283 21 C -0.049 4.049 22 C -0.011 4.011 23 C -0.168 4.168 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.035 0.965 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.235 0.765 33 H 0.112 0.888 34 H 0.125 0.875 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.127 0.873 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.146 -14.323 -6.057 17.556 hybrid contribution 0.204 1.484 0.615 1.619 sum 8.350 -12.839 -5.442 16.254 Atomic orbital electron populations 1.69957 1.06084 1.26650 1.50648 1.25017 0.94788 0.99219 0.95326 0.86648 0.79868 0.83694 0.78111 1.20675 1.21276 1.19888 1.21209 0.92894 0.90908 1.50736 0.92580 1.19121 0.93557 0.90935 0.97309 1.21200 0.98071 0.94757 0.95895 1.21926 0.97391 0.96868 0.99517 1.22380 0.96191 0.84448 1.01102 1.48242 1.46382 1.12441 1.26214 1.20895 0.81751 0.83893 0.84877 1.90670 1.49083 1.27193 1.74112 1.22897 0.83232 0.97216 0.92507 1.86666 1.23926 1.52235 1.72074 1.22925 1.05626 0.95250 0.93411 1.23227 1.02099 0.81548 0.96038 1.88919 1.85960 1.20169 1.33263 1.24316 0.98857 0.99019 0.82676 1.21757 0.92552 1.00529 0.86228 1.22046 0.97579 0.94660 1.02525 0.92971 0.96589 0.96506 0.92132 0.91966 0.89173 0.90335 0.90289 0.76488 0.88786 0.87540 0.91825 0.89290 0.90579 0.87278 0.91418 0.89507 0.90817 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 13.29 55.43 0.74 -25.12 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.52 -13.45 8.39 -34.44 -0.29 -13.74 16 8 H 0.06 1.39 7.06 -52.49 -0.37 1.02 16 9 C 0.03 0.65 4.45 -27.88 -0.12 0.53 16 10 C -0.08 -1.42 2.10 -90.57 -0.19 -1.61 16 11 C -0.12 -1.81 5.19 -26.61 -0.14 -1.95 16 12 C 0.08 0.94 4.74 -3.71 -0.02 0.93 16 13 N -0.60 -7.91 2.97 -172.76 -0.51 -8.43 16 14 C 0.50 7.05 6.79 -10.98 -0.07 6.97 16 15 O -0.53 -8.93 14.89 5.56 0.08 -8.85 16 16 C 0.09 1.06 0.94 -89.76 -0.08 0.97 16 17 O -0.54 -6.43 13.05 -35.23 -0.46 -6.89 16 18 C -0.13 -1.50 6.19 -25.21 -0.16 -1.66 16 19 C 0.05 0.49 7.70 37.73 0.29 0.78 16 20 O -0.36 -4.71 11.52 -35.23 -0.41 -5.12 16 21 C 0.03 0.34 6.24 38.21 0.24 0.58 16 22 C 0.11 1.51 6.42 -3.71 -0.02 1.49 16 23 C -0.13 -2.00 5.36 -26.61 -0.14 -2.14 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.09 1.46 6.91 -51.93 -0.36 1.10 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.78 2.78 -51.93 -0.14 0.63 16 32 H 0.38 3.60 5.45 45.56 0.25 3.85 16 33 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 34 H 0.11 1.23 6.88 -51.93 -0.36 0.87 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 37 H 0.08 0.91 8.04 -51.93 -0.42 0.50 16 38 H 0.11 1.20 6.36 -51.93 -0.33 0.87 16 39 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 40 H 0.09 1.23 7.03 -51.93 -0.37 0.86 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 324.87 15.07 4.90 4.90 Total: -1.00 -31.15 324.87 -7.37 -38.52 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.88 Total: 2.73 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -0.81 Total: -7.38 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.22 Total: -33.55 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.78 Total: -20.85 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.15 -7.37 -38.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569343982.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.611 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds