Wall clock time and date at job start Tue Mar 31 2020 05:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99827 * 2 1 4 4 H 1.48494 * 109.47205 * 270.00205 * 3 2 1 5 5 H 1.48500 * 109.47017 * 149.99750 * 3 2 1 6 6 H 1.48507 * 109.47098 * 30.00122 * 3 2 1 7 7 C 1.37876 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99612 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99814 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.46846 * 180.02562 * 9 7 2 11 11 C 1.53044 * 109.45752 * 295.02386 * 10 9 7 12 12 C 1.53191 * 109.31251 * 178.59992 * 11 10 9 13 13 N 1.46935 * 108.76264 * 54.65780 * 12 11 10 14 14 C 1.34771 * 120.63088 * 126.40355 * 13 12 11 15 15 O 1.21282 * 120.00128 * 354.08310 * 14 13 12 16 16 C 1.50694 * 120.00101 * 174.07678 * 14 13 12 17 17 O 1.42903 * 110.43833 * 307.58913 * 16 14 13 18 18 C 1.54809 * 110.48948 * 185.03989 * 16 14 13 19 19 C 1.55221 * 101.99160 * 220.52180 * 18 16 14 20 20 O 1.44378 * 103.56699 * 36.87871 * 19 18 16 21 21 C 1.43740 * 106.97627 * 320.01735 * 20 19 18 22 22 C 1.46925 * 118.73651 * 306.38347 * 13 12 11 23 23 C 1.53041 * 109.45825 * 174.97100 * 10 9 7 24 24 H 0.96996 * 119.99515 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47258 * 299.99816 * 9 7 2 26 26 H 1.09000 * 109.47700 * 60.00347 * 9 7 2 27 27 H 1.08997 * 109.45998 * 54.99790 * 10 9 7 28 28 H 1.08996 * 109.50004 * 298.56806 * 11 10 9 29 29 H 1.09006 * 109.49598 * 58.66606 * 11 10 9 30 30 H 1.08994 * 109.59785 * 294.87415 * 12 11 10 31 31 H 1.08995 * 109.58613 * 174.43693 * 12 11 10 32 32 H 0.96698 * 114.00100 * 52.68118 * 17 16 14 33 33 H 1.08996 * 110.91085 * 338.64778 * 18 16 14 34 34 H 1.09009 * 110.90520 * 102.24683 * 18 16 14 35 35 H 1.09008 * 110.52117 * 278.38749 * 19 18 16 36 36 H 1.09003 * 110.78214 * 155.50325 * 19 18 16 37 37 H 1.09004 * 109.87770 * 267.08822 * 21 20 19 38 38 H 1.09005 * 110.00845 * 146.00471 * 21 20 19 39 39 H 1.09003 * 109.59022 * 293.82164 * 22 13 12 40 40 H 1.09004 * 109.58661 * 173.39801 * 22 13 12 41 41 H 1.08996 * 109.50135 * 301.33227 * 23 10 9 42 42 H 1.09005 * 109.49570 * 61.40321 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 3.5467 1.4402 0.7001 6 1 1.4465 2.6527 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4990 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 3.0417 -3.6522 -1.3084 12 6 4.0600 -4.7965 -1.2898 13 7 3.3510 -6.0559 -1.0248 14 6 3.4932 -7.1109 -1.8513 15 8 4.1243 -6.9945 -2.8804 16 6 2.8680 -8.4355 -1.4967 17 8 3.2520 -8.8315 -0.1784 18 6 3.2715 -9.5182 -2.5269 19 6 1.9427 -10.2989 -2.7114 20 8 0.9328 -9.2693 -2.6447 21 6 1.3333 -8.3551 -1.6103 22 6 2.4845 -6.1433 0.1585 23 6 1.4841 -4.9837 0.1239 24 1 -0.4849 -0.8401 -0.0004 25 1 0.6241 -2.5574 0.8880 26 1 0.6248 -2.5563 -0.8920 27 1 2.9288 -3.5553 0.8409 28 1 2.3615 -3.7839 -2.1498 29 1 3.5651 -2.7013 -1.4084 30 1 4.7951 -4.6190 -0.5049 31 1 4.5610 -4.8555 -2.2560 32 1 3.0894 -8.1592 0.4973 33 1 3.5886 -9.0634 -3.4653 34 1 4.0524 -10.1647 -2.1261 35 1 1.8085 -11.0208 -1.9057 36 1 1.9187 -10.7980 -3.6802 37 1 0.8760 -8.6433 -0.6636 38 1 1.0336 -7.3404 -1.8727 39 1 3.0912 -6.0755 1.0615 40 1 1.9460 -7.0909 0.1479 41 1 0.8987 -4.9806 1.0433 42 1 0.8183 -5.1024 -0.7310 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569343983.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:32 Heat of formation + Delta-G solvation = -136.184084 kcal Electronic energy + Delta-G solvation = -23643.714124 eV Core-core repulsion = 20202.422867 eV Total energy + Delta-G solvation = -3441.291257 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.30929 -39.04743 -37.55354 -36.66422 -34.33094 -32.29001 -31.43827 -31.13101 -29.29210 -27.88763 -24.84984 -23.68396 -23.36060 -22.47591 -21.53724 -20.43070 -19.35250 -17.94626 -17.05477 -16.90968 -16.63465 -15.88928 -15.64405 -15.10611 -14.76570 -14.25529 -13.98705 -13.82316 -13.70253 -13.59085 -13.25156 -13.15353 -12.88860 -12.57552 -12.27046 -11.85693 -11.71850 -11.64295 -11.35585 -11.29237 -11.02906 -10.86129 -10.71162 -10.35363 -10.15652 -10.07808 -9.89935 -9.66323 -9.62866 -8.73937 -8.48705 -8.36330 -6.39295 -4.08899 2.26963 2.73592 3.41104 3.43804 3.50524 3.59209 3.70526 3.85189 4.19661 4.48285 4.50192 4.59932 4.80708 4.92716 5.01580 5.11257 5.14049 5.27801 5.31515 5.36544 5.40376 5.47163 5.48963 5.57058 5.71233 5.78144 5.84754 6.08502 6.10902 6.29071 6.38299 6.43685 6.73303 6.78785 6.88445 6.97316 7.21850 7.30183 7.45924 7.90152 8.16342 8.42181 8.84751 9.63125 11.01091 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.033684 B = 0.003798 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.051207 B = 7370.693725 C = 7628.641020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 1.068 2.932 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.599 4.599 8 H 0.050 0.950 9 C 0.015 3.985 10 C -0.074 4.074 11 C -0.118 4.118 12 C 0.108 3.892 13 N -0.603 5.603 14 C 0.500 3.500 15 O -0.528 6.528 16 C 0.085 3.915 17 O -0.543 6.543 18 C -0.134 4.134 19 C 0.047 3.953 20 O -0.367 6.367 21 C 0.028 3.972 22 C 0.089 3.911 23 C -0.131 4.131 24 H 0.268 0.732 25 H 0.007 0.993 26 H 0.007 0.993 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.381 0.619 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.249 -18.795 -0.259 19.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.189 4.189 3 Si 0.897 3.103 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.637 4.637 8 H 0.068 0.932 9 C -0.022 4.022 10 C -0.092 4.092 11 C -0.156 4.156 12 C -0.013 4.013 13 N -0.337 5.337 14 C 0.286 3.714 15 O -0.404 6.404 16 C 0.040 3.960 17 O -0.353 6.353 18 C -0.171 4.171 19 C -0.029 4.029 20 O -0.285 6.285 21 C -0.050 4.050 22 C -0.033 4.033 23 C -0.169 4.169 24 H 0.079 0.921 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.234 0.766 33 H 0.128 0.872 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.118 0.882 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.381 -17.594 -1.229 18.439 hybrid contribution 0.139 -1.055 0.622 1.233 sum 5.519 -18.649 -0.606 19.458 Atomic orbital electron populations 1.70760 1.06936 1.30592 1.46718 1.25814 0.96539 1.02718 0.93853 0.83546 0.74690 0.75288 0.76768 1.21484 1.21495 1.21041 1.22040 0.94218 0.91862 1.55563 0.93168 1.19249 0.94199 0.92864 0.95928 1.21066 0.97778 0.93758 0.96626 1.21897 0.97646 0.97492 0.98552 1.21862 0.94916 0.82242 1.02301 1.48227 1.46357 1.13198 1.25884 1.20913 0.81016 0.85568 0.83918 1.90680 1.41461 1.83951 1.24354 1.22799 0.94726 0.93013 0.85435 1.86655 1.87003 1.46013 1.15656 1.23170 0.99192 0.96015 0.98753 1.23677 0.85629 0.90867 1.02756 1.88928 1.46071 1.37807 1.55742 1.23986 0.92029 0.95774 0.93217 1.22121 0.93175 0.99971 0.88065 1.22058 0.97388 0.94849 1.02620 0.92112 0.97482 0.97518 0.92003 0.92322 0.89403 0.91402 0.89355 0.76599 0.87209 0.88490 0.91546 0.88163 0.90282 0.88675 0.90336 0.90575 0.90606 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.44 13.65 55.43 0.76 -26.69 16 2 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 3 Si 1.07 24.81 29.90 -169.99 -5.08 19.72 16 4 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.60 -16.11 8.39 -34.44 -0.29 -16.40 16 8 H 0.05 1.32 7.06 -52.49 -0.37 0.95 16 9 C 0.01 0.35 3.76 -27.88 -0.10 0.24 16 10 C -0.07 -1.34 2.10 -90.57 -0.19 -1.53 16 11 C -0.12 -2.06 5.19 -26.61 -0.14 -2.20 16 12 C 0.11 1.61 6.44 -3.71 -0.02 1.58 16 13 N -0.60 -8.14 2.97 -172.77 -0.51 -8.66 16 14 C 0.50 7.23 6.55 -10.99 -0.07 7.15 16 15 O -0.53 -9.26 14.84 5.56 0.08 -9.18 16 16 C 0.08 1.00 0.98 -90.24 -0.09 0.91 16 17 O -0.54 -5.76 12.92 -35.23 -0.46 -6.22 16 18 C -0.13 -1.46 6.33 -24.60 -0.16 -1.61 16 19 C 0.05 0.45 7.72 38.33 0.30 0.75 16 20 O -0.37 -4.59 11.52 -35.23 -0.41 -5.00 16 21 C 0.03 0.31 5.54 37.73 0.21 0.52 16 22 C 0.09 0.98 4.40 -3.71 -0.02 0.96 16 23 C -0.13 -1.85 5.36 -26.61 -0.14 -1.99 16 24 H 0.27 8.01 7.22 -40.82 -0.29 7.72 16 25 H 0.01 0.17 8.01 -51.93 -0.42 -0.24 16 26 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.09 1.67 6.91 -51.93 -0.36 1.31 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.09 1.38 7.00 -51.93 -0.36 1.02 16 32 H 0.38 3.12 5.50 45.56 0.25 3.37 16 33 H 0.11 1.34 6.82 -51.93 -0.35 0.98 16 34 H 0.10 0.95 8.08 -51.92 -0.42 0.53 16 35 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.74 7.58 -51.93 -0.39 0.35 16 38 H 0.10 1.15 7.41 -51.93 -0.38 0.77 16 39 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 40 H 0.08 0.66 3.52 -51.93 -0.18 0.48 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 323.57 15.07 4.88 4.88 Total: -1.00 -32.49 323.57 -7.44 -39.92 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -5.88 Total: 2.51 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -0.81 Total: -11.30 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.24 Total: -35.34 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.78 Total: -20.40 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.08 Total: 19.72 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.49 -7.44 -39.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569343983.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.264 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds