Wall clock time and date at job start Tue Mar 31 2020 05:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47303 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99697 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00137 * 179.97438 * 11 10 9 14 14 C 1.47151 * 120.98263 * 0.02562 * 13 11 10 15 15 C 1.53297 * 108.38440 * 129.43816 * 14 13 11 16 16 O 1.42964 * 109.22117 * 52.30580 * 15 14 13 17 17 C 1.42963 * 114.16436 * 297.41246 * 16 15 14 18 18 H 1.08995 * 109.51519 * 302.66590 * 17 16 15 19 19 C 1.53000 * 109.51486 * 182.55503 * 17 16 15 20 20 H 1.08996 * 109.87132 * 299.00231 * 19 17 16 21 21 C 1.54102 * 109.87239 * 60.00122 * 19 17 16 22 22 C 1.54815 * 104.18483 * 121.45481 * 21 19 17 23 23 C 1.54996 * 102.09273 * 20.87933 * 22 21 19 24 24 O 1.43740 * 109.88052 * 177.83111 * 19 17 16 25 25 C 1.47148 * 120.98079 * 179.71675 * 13 11 10 26 26 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 28 28 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 29 29 H 1.09004 * 109.46733 * 299.99896 * 10 9 7 30 30 H 1.09004 * 109.47253 * 59.99496 * 10 9 7 31 31 H 1.08997 * 109.68049 * 249.16656 * 14 13 11 32 32 H 1.09001 * 109.67868 * 9.68099 * 14 13 11 33 33 H 1.09002 * 109.50753 * 172.22472 * 15 14 13 34 34 H 1.09002 * 109.51327 * 292.37466 * 15 14 13 35 35 H 1.08994 * 110.49205 * 240.12801 * 21 19 17 36 36 H 1.08998 * 110.48860 * 2.65178 * 21 19 17 37 37 H 1.09004 * 110.90759 * 139.07796 * 22 21 19 38 38 H 1.09001 * 110.91110 * 262.68229 * 22 21 19 39 39 H 1.09005 * 110.61524 * 81.47443 * 23 22 21 40 40 H 1.09000 * 110.62192 * 204.31583 * 23 22 21 41 41 H 1.09002 * 109.68434 * 350.28417 * 25 13 11 42 42 H 1.09000 * 109.67902 * 110.84031 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0014 11 6 5.5284 -2.6368 -0.0014 12 8 6.1348 -1.5865 -0.0009 13 7 6.2022 -3.8040 -0.0020 14 6 5.4883 -5.0908 -0.0033 15 6 6.0623 -5.9610 -1.1272 16 8 7.4843 -6.0241 -0.9942 17 6 8.1410 -4.7611 -1.1262 18 1 7.8921 -4.3204 -2.0915 19 6 9.6550 -4.9597 -1.0301 20 1 9.9124 -5.3822 -0.0589 21 6 10.1323 -5.9002 -2.1536 22 6 11.1672 -5.0584 -2.9391 23 6 11.5646 -3.9798 -1.8993 24 8 10.3256 -3.7015 -1.2124 25 6 7.6734 -3.8293 -0.0083 26 1 -0.4850 0.8401 0.0004 27 1 3.8751 -0.6798 -0.8895 28 1 3.8745 -0.6809 0.8904 29 1 3.6577 -3.1515 0.8880 30 1 3.6583 -3.1496 -0.8920 31 1 5.6291 -5.5896 0.9556 32 1 4.4256 -4.9208 -0.1761 33 1 5.6453 -6.9658 -1.0586 34 1 5.8058 -5.5247 -2.0926 35 1 10.6034 -6.7886 -1.7332 36 1 9.2981 -6.1801 -2.7970 37 1 12.0288 -5.6642 -3.2198 38 1 10.7113 -4.6023 -3.8178 39 1 12.3086 -4.3712 -1.2055 40 1 11.9392 -3.0857 -2.3978 41 1 8.0572 -2.8245 -0.1852 42 1 8.0383 -4.1988 0.9500 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589708365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:19 Heat of formation + Delta-G solvation = -128.306815 kcal Electronic energy + Delta-G solvation = -22905.505981 eV Core-core repulsion = 19464.556308 eV Total energy + Delta-G solvation = -3440.949673 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.54831 -39.43500 -38.09281 -34.65548 -33.58490 -32.62943 -32.31884 -31.22025 -29.06103 -27.78782 -25.78810 -24.21477 -22.79767 -22.09382 -21.15813 -20.72886 -18.72456 -17.43144 -17.00902 -16.57770 -16.54715 -16.13675 -15.58673 -15.37631 -15.11199 -14.63103 -14.47870 -14.05673 -13.92529 -13.65443 -13.28949 -12.95013 -12.59215 -12.35263 -12.11094 -12.07044 -11.65229 -11.57678 -11.47426 -11.34206 -11.08208 -10.96736 -10.74067 -10.28134 -10.13308 -10.04464 -9.98125 -9.78041 -9.24147 -9.14730 -8.51726 -8.44932 -6.03289 -4.02059 2.91172 3.05823 3.13687 3.38611 3.45091 3.56531 3.96776 4.23781 4.37448 4.51329 4.56903 4.62463 4.71964 4.84621 4.91449 4.96136 5.00628 5.08964 5.25862 5.28884 5.32390 5.38625 5.43765 5.46221 5.48433 5.62002 5.66783 5.75028 5.80801 5.91779 6.01648 6.06213 6.51610 6.55355 6.67599 6.89427 7.36149 7.42829 7.57829 7.78768 8.48069 8.59431 8.99239 9.59919 11.09478 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.027478 B = 0.003589 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.760363 B = 7798.843999 C = 8502.761963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.261 1.261 6 H -0.288 1.288 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.120 4.120 11 C 0.514 3.486 12 O -0.535 6.535 13 N -0.628 5.628 14 C 0.072 3.928 15 C 0.051 3.949 16 O -0.376 6.376 17 C 0.082 3.918 18 H 0.069 0.931 19 C 0.088 3.912 20 H 0.079 0.921 21 C -0.143 4.143 22 C -0.158 4.158 23 C 0.047 3.953 24 O -0.365 6.365 25 C 0.088 3.912 26 H 0.263 0.737 27 H 0.023 0.977 28 H 0.019 0.981 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.393 -16.193 -4.227 27.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.185 1.185 6 H -0.214 1.214 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.160 4.160 11 C 0.304 3.696 12 O -0.410 6.410 13 N -0.365 5.365 14 C -0.051 4.051 15 C -0.027 4.027 16 O -0.295 6.295 17 C 0.023 3.977 18 H 0.087 0.913 19 C 0.030 3.970 20 H 0.096 0.904 21 C -0.181 4.181 22 C -0.196 4.196 23 C -0.030 4.030 24 O -0.285 6.285 25 C -0.035 4.035 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.038 0.962 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.113 0.887 41 H 0.124 0.876 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 21.564 -15.437 -4.117 26.837 hybrid contribution 0.217 0.759 -0.046 0.791 sum 21.780 -14.678 -4.162 26.592 Atomic orbital electron populations 1.69913 1.06289 1.26985 1.51056 1.24967 0.94710 0.99239 0.94296 0.86798 0.80633 0.83371 0.78792 1.20209 1.18523 1.21413 1.21098 0.89204 0.94557 1.51400 0.90938 1.19384 0.96449 0.90126 0.97712 1.21693 0.87841 1.03342 1.03102 1.21600 0.91602 0.82202 0.74191 1.90654 1.70652 1.30868 1.48839 1.48333 1.06011 1.06288 1.75833 1.22424 0.98434 0.84474 0.99810 1.23020 0.80578 1.01174 0.97910 1.87834 1.19253 1.28857 1.93558 1.22314 0.91629 0.84771 0.98978 0.91286 1.22472 0.90491 0.84754 0.99329 0.90362 1.22894 0.99483 0.98500 0.97228 1.23184 0.99418 0.97767 0.99189 1.23584 0.87061 0.99056 0.93294 1.88912 1.33210 1.27648 1.78685 1.22023 0.80838 1.02294 0.98355 0.92708 0.95820 0.96232 0.89572 0.89648 0.90643 0.87861 0.87312 0.92361 0.90364 0.89858 0.90117 0.90408 0.91985 0.88698 0.87620 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.10 13.96 55.43 0.77 -27.33 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 22.82 27.47 -169.99 -4.67 18.15 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 5 H -0.26 -6.79 6.54 56.52 0.37 -6.42 16 6 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 7 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 10 C -0.12 -2.38 4.01 -27.88 -0.11 -2.49 16 11 C 0.51 9.94 7.71 -10.99 -0.08 9.85 16 12 O -0.53 -12.45 15.45 5.56 0.09 -12.37 16 13 N -0.63 -9.51 3.03 -172.55 -0.52 -10.03 16 14 C 0.07 0.81 6.54 -3.53 -0.02 0.78 16 15 C 0.05 0.48 6.98 37.31 0.26 0.74 16 16 O -0.38 -4.13 9.87 -35.23 -0.35 -4.47 16 17 C 0.08 0.96 2.36 -26.81 -0.06 0.90 16 18 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 19 C 0.09 0.89 3.20 -26.16 -0.08 0.81 16 20 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 21 C -0.14 -1.14 6.39 -25.20 -0.16 -1.30 16 22 C -0.16 -1.08 7.15 -24.72 -0.18 -1.26 16 23 C 0.05 0.37 7.72 38.21 0.29 0.66 16 24 O -0.37 -4.23 10.80 -35.23 -0.38 -4.61 16 25 C 0.09 1.24 5.68 -3.77 -0.02 1.22 16 26 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 27 H 0.02 0.63 7.15 -51.93 -0.37 0.25 16 28 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 29 H 0.09 1.57 8.01 -51.93 -0.42 1.16 16 30 H 0.09 1.54 7.66 -51.93 -0.40 1.14 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 1.10 6.05 -51.93 -0.31 0.79 16 33 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.70 7.50 -51.93 -0.39 0.31 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.11 1.74 6.95 -51.93 -0.36 1.38 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 334.25 15.07 5.04 5.04 Total: -1.00 -34.88 334.25 -7.59 -42.48 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -6.88 Total: -3.26 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -0.69 Total: -3.59 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.25 Total: -37.36 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.64 Total: -21.45 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.67 Total: 18.15 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.88 -7.59 -42.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589708365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.829 kcal (2) G-P(sol) polarization free energy of solvation -34.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds