Wall clock time and date at job start Tue Mar 31 2020 05:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 120.00108 * 2 1 4 4 H 1.48504 * 109.46989 * 270.00463 * 3 2 1 5 5 H 1.48496 * 109.46901 * 29.99799 * 3 2 1 6 6 H 1.48497 * 109.47054 * 150.00182 * 3 2 1 7 7 C 1.37876 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99655 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00377 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47490 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47328 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99727 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99802 * 180.02562 * 11 10 9 14 14 C 1.47142 * 120.98358 * 359.97438 * 13 11 10 15 15 C 1.53297 * 108.38766 * 230.55955 * 14 13 11 16 16 O 1.42968 * 109.26403 * 307.67587 * 15 14 13 17 17 C 1.43050 * 114.10897 * 62.54313 * 16 15 14 18 18 H 1.09002 * 109.54116 * 57.42085 * 17 16 15 19 19 C 1.53001 * 109.49230 * 177.52456 * 17 16 15 20 20 H 1.08997 * 110.32954 * 62.03013 * 19 17 16 21 21 C 1.54478 * 110.37354 * 299.77597 * 19 17 16 22 22 C 1.54510 * 104.05959 * 217.18947 * 21 19 17 23 23 C 1.54473 * 104.06536 * 0.02562 * 22 21 19 24 24 O 1.44420 * 104.80453 * 23.97892 * 23 22 21 25 25 C 1.47155 * 120.98030 * 180.02562 * 13 11 10 26 26 H 0.97003 * 120.00228 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47516 * 59.99279 * 9 7 2 28 28 H 1.09007 * 109.46842 * 299.99238 * 9 7 2 29 29 H 1.09004 * 109.47011 * 59.99704 * 10 9 7 30 30 H 1.08994 * 109.47039 * 299.99660 * 10 9 7 31 31 H 1.09008 * 109.68311 * 110.83867 * 14 13 11 32 32 H 1.08998 * 109.71463 * 350.30487 * 14 13 11 33 33 H 1.09002 * 109.51172 * 67.62438 * 15 14 13 34 34 H 1.08997 * 109.51619 * 187.72551 * 15 14 13 35 35 H 1.08989 * 110.51388 * 335.83340 * 21 19 17 36 36 H 1.09003 * 110.50805 * 98.54963 * 21 19 17 37 37 H 1.08996 * 110.51158 * 118.64977 * 22 21 19 38 38 H 1.09004 * 110.50831 * 241.35676 * 22 21 19 39 39 H 1.09004 * 110.37473 * 142.80908 * 23 22 21 40 40 H 1.09000 * 110.37438 * 265.03494 * 23 22 21 41 41 H 1.09001 * 109.67938 * 249.16851 * 25 13 11 42 42 H 1.09009 * 109.68227 * 9.71562 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5285 -2.6365 -0.0001 12 8 6.1349 -1.5861 0.0004 13 7 6.2024 -3.8037 -0.0008 14 6 5.4886 -5.0904 -0.0008 15 6 6.0626 -5.9619 1.1221 16 8 7.4847 -6.0258 0.9895 17 6 8.1413 -4.7618 1.1221 18 1 7.8933 -4.3217 2.0880 19 6 9.6553 -4.9602 1.0247 20 1 9.9221 -5.3648 0.0484 21 6 10.1482 -5.8984 2.1486 22 6 11.5154 -5.3068 2.5587 23 6 11.6864 -4.0809 1.6345 24 8 10.3417 -3.7111 1.2594 25 6 7.6737 -3.8290 -0.0003 26 1 -0.4850 0.8401 -0.0004 27 1 3.8745 -0.6807 0.8904 28 1 3.8751 -0.6797 -0.8896 29 1 3.6585 -3.1502 -0.8903 30 1 3.6579 -3.1505 0.8896 31 1 5.6294 -5.5883 -0.9603 32 1 4.4259 -4.9214 0.1725 33 1 5.8062 -5.5267 2.0880 34 1 5.6451 -6.9664 1.0531 35 1 9.4567 -5.8815 2.9909 36 1 10.2690 -6.9143 1.7725 37 1 11.4997 -4.9976 3.6037 38 1 12.3120 -6.0303 2.3854 39 1 12.1684 -3.2644 2.1724 40 1 12.2681 -4.3488 0.7525 41 1 8.0348 -4.1995 -0.9597 42 1 8.0581 -2.8238 0.1738 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589708366.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:22 Heat of formation + Delta-G solvation = -128.273832 kcal Electronic energy + Delta-G solvation = -22858.730325 eV Core-core repulsion = 19417.782082 eV Total energy + Delta-G solvation = -3440.948242 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.51259 -39.43107 -38.10113 -34.65917 -33.58747 -32.61516 -32.31846 -31.22378 -29.06173 -27.78790 -25.80682 -24.26267 -22.85211 -21.94294 -21.19148 -20.72495 -18.73340 -17.42607 -17.08785 -16.55109 -16.42583 -16.12138 -15.62372 -15.39158 -15.17613 -14.67557 -14.44354 -14.05726 -14.01246 -13.66808 -13.24239 -12.93144 -12.59055 -12.35773 -12.11439 -12.06765 -11.70288 -11.54891 -11.49630 -11.34399 -10.99096 -10.96803 -10.72959 -10.30593 -10.13430 -10.07190 -10.04564 -9.78266 -9.24606 -9.15165 -8.51931 -8.45719 -6.03308 -4.02153 2.90285 3.04967 3.11617 3.38564 3.45091 3.56547 4.02056 4.26289 4.33267 4.51266 4.57474 4.61715 4.73698 4.81712 4.88768 4.95467 5.01927 5.10286 5.22405 5.27108 5.32329 5.39266 5.39576 5.46578 5.50257 5.61290 5.66996 5.73548 5.78313 5.89245 6.01348 6.05885 6.47793 6.51820 6.67155 6.87502 7.35916 7.42708 7.56930 7.78664 8.47804 8.58877 8.99158 9.59869 11.09435 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.028322 B = 0.003538 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.403930 B = 7912.874480 C = 8631.816900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.120 4.120 11 C 0.514 3.486 12 O -0.535 6.535 13 N -0.628 5.628 14 C 0.072 3.928 15 C 0.050 3.950 16 O -0.375 6.375 17 C 0.086 3.914 18 H 0.072 0.928 19 C 0.085 3.915 20 H 0.079 0.921 21 C -0.141 4.141 22 C -0.158 4.158 23 C 0.045 3.955 24 O -0.364 6.364 25 C 0.088 3.912 26 H 0.263 0.737 27 H 0.024 0.976 28 H 0.019 0.981 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.058 0.942 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.512 -16.380 3.587 27.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.160 4.160 11 C 0.304 3.696 12 O -0.410 6.410 13 N -0.365 5.365 14 C -0.051 4.051 15 C -0.027 4.027 16 O -0.294 6.294 17 C 0.028 3.972 18 H 0.089 0.911 19 C 0.027 3.973 20 H 0.097 0.903 21 C -0.179 4.179 22 C -0.195 4.195 23 C -0.032 4.032 24 O -0.283 6.283 25 C -0.035 4.035 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.038 0.962 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.077 0.923 34 H 0.127 0.873 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 21.673 -15.611 3.532 26.942 hybrid contribution 0.258 0.764 0.008 0.807 sum 21.930 -14.847 3.540 26.719 Atomic orbital electron populations 1.69908 1.06287 1.26990 1.51050 1.24965 0.94708 0.99236 0.94292 0.86801 0.80637 0.83379 0.78788 1.20212 1.21414 1.18520 1.21094 0.89206 0.94561 1.51409 0.90938 1.19384 0.96450 0.90122 0.97716 1.21693 0.87820 1.03351 1.03112 1.21608 0.91612 0.82197 0.74173 1.90657 1.70655 1.30859 1.48832 1.48332 1.05986 1.06308 1.75851 1.22425 0.98456 0.84443 0.99813 1.23022 0.80532 1.01189 0.97945 1.87856 1.19279 1.28722 1.93563 1.22274 0.91081 0.84817 0.99068 0.91053 1.22727 0.90710 0.84833 0.99026 0.90294 1.22865 0.96437 0.99696 0.98859 1.22985 0.97776 0.97885 1.00895 1.23428 0.84762 0.97426 0.97542 1.89169 1.23035 1.26704 1.89358 1.22119 0.80907 1.02255 0.98267 0.92704 0.95814 0.96234 0.89571 0.89628 0.90641 0.87831 0.92323 0.87289 0.90430 0.90064 0.90590 0.90462 0.88827 0.92075 0.91296 0.87615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 22.81 27.47 -169.99 -4.67 18.14 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.26 -6.78 6.54 56.52 0.37 -6.41 16 7 C -0.52 -15.07 9.66 -34.44 -0.33 -15.40 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 10 C -0.12 -2.37 4.01 -27.88 -0.11 -2.48 16 11 C 0.51 9.90 7.71 -10.99 -0.08 9.81 16 12 O -0.53 -12.41 15.45 5.55 0.09 -12.33 16 13 N -0.63 -9.45 3.02 -172.30 -0.52 -9.97 16 14 C 0.07 0.80 6.54 -3.54 -0.02 0.78 16 15 C 0.05 0.48 6.98 37.31 0.26 0.74 16 16 O -0.38 -4.10 10.07 -35.23 -0.35 -4.45 16 17 C 0.09 1.02 2.45 -26.60 -0.07 0.95 16 18 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 19 C 0.09 0.87 3.03 -25.95 -0.08 0.79 16 20 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 21 C -0.14 -1.14 6.33 -25.16 -0.16 -1.30 16 22 C -0.16 -1.06 7.09 -25.17 -0.18 -1.24 16 23 C 0.05 0.36 7.63 37.93 0.29 0.65 16 24 O -0.36 -4.23 11.08 -35.23 -0.39 -4.62 16 25 C 0.09 1.22 5.75 -3.55 -0.02 1.20 16 26 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 27 H 0.02 0.63 7.16 -51.93 -0.37 0.26 16 28 H 0.02 0.51 7.53 -51.92 -0.39 0.12 16 29 H 0.09 1.57 8.01 -51.93 -0.42 1.15 16 30 H 0.09 1.54 7.66 -51.93 -0.40 1.14 16 31 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 32 H 0.10 1.09 6.06 -51.93 -0.31 0.78 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.67 7.87 -51.93 -0.41 0.26 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.11 1.73 7.02 -51.92 -0.36 1.36 16 LS Contribution 334.96 15.07 5.05 5.05 Total: -1.00 -34.86 334.96 -7.62 -42.49 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -6.90 Total: -3.39 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -0.70 Total: -3.61 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.25 Total: -37.28 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.66 Total: -21.40 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.67 Total: 18.14 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.86 -7.62 -42.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589708366.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.786 kcal (2) G-P(sol) polarization free energy of solvation -34.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds