Wall clock time and date at job start Tue Mar 31 2020 05:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.50697 * 109.47491 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99458 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00483 * 179.97438 * 11 10 9 14 14 C 1.47153 * 120.98176 * 0.02562 * 13 11 10 15 15 C 1.53297 * 108.38362 * 230.51024 * 14 13 11 16 16 O 1.42963 * 109.22077 * 307.69505 * 15 14 13 17 17 C 1.42958 * 114.16429 * 62.58267 * 16 15 14 18 18 H 1.09003 * 109.51778 * 57.34335 * 17 16 15 19 19 C 1.53006 * 109.50800 * 177.44300 * 17 16 15 20 20 H 1.09005 * 110.27412 * 185.63473 * 19 17 16 21 21 C 1.54943 * 110.30996 * 307.83346 * 19 17 16 22 22 C 1.55306 * 100.94143 * 155.36230 * 21 19 17 23 23 C 1.54376 * 102.25263 * 325.86473 * 22 21 19 24 24 O 1.43242 * 107.58885 * 21.35578 * 23 22 21 25 25 C 1.47151 * 120.98366 * 179.71372 * 13 11 10 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 28 28 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 29 29 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 30 30 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 31 31 H 1.09003 * 109.68239 * 350.22880 * 14 13 11 32 32 H 1.08997 * 109.68439 * 110.78411 * 14 13 11 33 33 H 1.09005 * 109.51465 * 67.62207 * 15 14 13 34 34 H 1.09005 * 109.51365 * 187.76800 * 15 14 13 35 35 H 1.09003 * 111.12127 * 273.27965 * 21 19 17 36 36 H 1.08999 * 111.12685 * 37.44095 * 21 19 17 37 37 H 1.09005 * 110.84287 * 207.67487 * 22 21 19 38 38 H 1.08994 * 111.02210 * 84.13630 * 22 21 19 39 39 H 1.09004 * 109.83328 * 261.84479 * 23 22 21 40 40 H 1.08996 * 109.90845 * 140.91279 * 23 22 21 41 41 H 1.09000 * 109.68377 * 249.21349 * 25 13 11 42 42 H 1.09001 * 109.67870 * 9.76930 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4916 -4.9672 -0.0157 12 8 0.2788 -4.9671 -0.0149 13 7 2.1653 -6.1344 -0.0212 14 6 3.6367 -6.1597 -0.0217 15 6 4.1039 -7.0879 -1.1488 16 8 3.4472 -8.3513 -1.0208 17 6 2.0252 -8.2878 -1.1532 18 1 1.7684 -7.8484 -2.1171 19 6 1.4401 -9.6986 -1.0626 20 1 0.3685 -9.6766 -1.2611 21 6 2.1550 -10.6425 -2.0620 22 6 1.9167 -12.0210 -1.3875 23 6 1.9643 -11.6639 0.1137 24 8 1.6955 -10.2620 0.2338 25 6 1.4515 -7.4212 -0.0201 26 1 -0.4850 0.8401 -0.0004 27 1 0.6242 -2.5609 0.8844 28 1 0.6244 -2.5529 -0.8956 29 1 2.8718 -3.6005 -0.9002 30 1 2.8717 -3.6084 0.8798 31 1 4.0211 -5.1540 -0.1914 32 1 3.9977 -6.5346 0.9360 33 1 3.8548 -6.6440 -2.1128 34 1 5.1825 -7.2295 -1.0803 35 1 1.6871 -10.6003 -3.0456 36 1 3.2191 -10.4147 -2.1250 37 1 2.7114 -12.7214 -1.6450 38 1 0.9420 -12.4260 -1.6592 39 1 2.9527 -11.8866 0.5157 40 1 1.2084 -12.2330 0.6547 41 1 1.5966 -7.9207 0.9377 42 1 0.3881 -7.2511 -0.1887 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589708368.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:28 Heat of formation + Delta-G solvation = -131.370774 kcal Electronic energy + Delta-G solvation = -22862.848087 eV Core-core repulsion = 19421.765551 eV Total energy + Delta-G solvation = -3441.082536 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.42903 -39.29624 -37.88558 -34.50391 -33.54020 -32.56930 -32.28364 -30.92256 -29.01105 -27.55527 -25.54892 -24.11378 -22.88392 -21.93077 -21.33500 -20.59849 -18.60902 -17.35910 -17.17038 -16.56799 -15.95953 -15.80775 -15.59769 -15.24120 -14.85631 -14.79029 -14.41149 -14.25945 -13.72756 -13.37046 -13.20912 -13.00390 -12.22056 -12.12335 -12.10417 -12.00753 -11.72059 -11.46095 -11.33255 -11.11033 -11.06912 -10.91528 -10.67305 -10.60525 -10.13678 -9.96336 -9.71827 -9.62289 -9.19137 -9.00094 -8.36235 -8.29116 -5.96026 -4.00666 3.14709 3.19588 3.34251 3.39025 3.40685 3.46502 3.58938 4.24428 4.40740 4.46724 4.60878 4.73469 4.84964 4.90434 4.98995 5.01799 5.11848 5.17874 5.30210 5.37887 5.38741 5.43678 5.45480 5.52199 5.56626 5.64113 5.75021 5.82223 5.95208 6.03124 6.17678 6.20731 6.64187 6.78406 6.88288 7.01602 7.71442 7.73862 7.85759 8.06964 8.37887 8.71509 9.07448 9.62746 11.14927 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.043541 B = 0.003108 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.919928 B = 9005.717550 C = 9330.355203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.513 3.487 12 O -0.532 6.532 13 N -0.629 5.629 14 C 0.075 3.925 15 C 0.048 3.952 16 O -0.370 6.370 17 C 0.081 3.919 18 H 0.074 0.926 19 C 0.090 3.910 20 H 0.087 0.913 21 C -0.147 4.147 22 C -0.156 4.156 23 C 0.053 3.947 24 O -0.369 6.369 25 C 0.088 3.912 26 H 0.262 0.738 27 H 0.024 0.976 28 H 0.023 0.977 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.167 -23.855 -3.855 25.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.168 4.168 11 C 0.304 3.696 12 O -0.407 6.407 13 N -0.366 5.366 14 C -0.049 4.049 15 C -0.030 4.030 16 O -0.289 6.289 17 C 0.022 3.978 18 H 0.091 0.909 19 C 0.032 3.968 20 H 0.104 0.896 21 C -0.185 4.185 22 C -0.193 4.193 23 C -0.024 4.024 24 O -0.288 6.288 25 C -0.035 4.035 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.118 0.882 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.123 0.877 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.419 -23.758 -3.621 25.152 hybrid contribution 0.435 0.988 -0.205 1.099 sum 7.854 -22.770 -3.825 24.388 Atomic orbital electron populations 1.69990 1.06068 1.26713 1.50043 1.25028 0.94830 0.99228 0.95284 0.86646 0.79542 0.83154 0.78539 1.20259 1.21274 1.20227 1.21177 0.92865 0.91001 1.51590 0.92664 1.18902 0.93159 0.89326 0.98622 1.21885 1.00763 0.91861 1.02259 1.21623 0.88440 0.85331 0.74198 1.90658 1.14359 1.87058 1.48648 1.48373 1.06379 1.05883 1.75990 1.22372 0.80759 1.01984 0.99761 1.22997 0.97727 0.84556 0.97696 1.87940 1.18149 1.29240 1.93521 1.22701 0.82084 0.94624 0.98366 0.90866 1.23002 0.98453 0.91631 0.83682 0.89555 1.23232 1.02984 0.93528 0.98747 1.23108 1.02821 0.98041 0.95365 1.23078 1.00866 0.82510 0.95938 1.88464 1.91447 1.21479 1.27460 1.22168 0.98454 0.83653 0.99271 0.92873 0.95808 0.95853 0.90306 0.90204 0.88155 0.90826 0.92600 0.87699 0.90070 0.88998 0.90096 0.90662 0.91403 0.91614 0.90215 0.88503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.59 13.29 55.43 0.74 -26.85 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.53 -15.04 9.11 -34.44 -0.31 -15.36 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.13 -2.65 4.01 -27.89 -0.11 -2.76 16 11 C 0.51 10.40 7.71 -10.99 -0.08 10.31 16 12 O -0.53 -12.95 15.45 5.55 0.09 -12.86 16 13 N -0.63 -9.98 3.01 -172.00 -0.52 -10.50 16 14 C 0.07 0.90 6.54 -3.53 -0.02 0.88 16 15 C 0.05 0.49 6.98 37.31 0.26 0.75 16 16 O -0.37 -4.38 9.20 -39.48 -0.36 -4.75 16 17 C 0.08 0.96 2.78 -26.34 -0.07 0.89 16 18 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 19 C 0.09 0.92 3.35 -25.70 -0.09 0.84 16 20 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 21 C -0.15 -1.18 6.51 -24.48 -0.16 -1.34 16 22 C -0.16 -1.05 7.02 -24.79 -0.17 -1.22 16 23 C 0.05 0.45 7.79 37.88 0.30 0.74 16 24 O -0.37 -4.34 10.12 -39.48 -0.40 -4.74 16 25 C 0.09 1.28 5.87 -3.30 -0.02 1.26 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 27 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 28 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 29 H 0.08 1.47 7.66 -51.93 -0.40 1.07 16 30 H 0.08 1.52 8.02 -51.93 -0.42 1.10 16 31 H 0.10 1.14 6.05 -51.93 -0.31 0.82 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.82 7.11 -51.93 -0.37 0.45 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.08 1.19 7.44 -51.93 -0.39 0.81 16 42 H 0.10 1.54 7.08 -51.93 -0.37 1.17 16 LS Contribution 336.35 15.07 5.07 5.07 Total: -1.00 -34.86 336.35 -7.98 -42.84 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -6.86 Total: -2.38 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -0.71 Total: -2.51 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.22 Total: -37.35 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.68 Total: -22.35 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.86 -7.98 -42.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589708368.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.531 kcal (2) G-P(sol) polarization free energy of solvation -34.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds