Wall clock time and date at job start Tue Mar 31 2020 05:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 120.00167 * 2 1 4 4 H 1.48492 * 109.47376 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47151 * 300.00218 * 3 2 1 6 6 H 1.48496 * 109.47180 * 59.99839 * 3 2 1 7 7 C 1.37884 * 120.00471 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00428 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99412 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47094 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47327 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.47278 * 180.02562 * 11 10 9 13 13 O 1.21276 * 119.99603 * 0.02562 * 12 11 10 14 14 N 1.34771 * 119.99970 * 180.02562 * 12 11 10 15 15 C 1.46502 * 119.99960 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47382 * 155.00007 * 15 14 12 17 17 C 1.52997 * 109.47493 * 180.02562 * 16 15 14 18 18 C 1.52996 * 109.46880 * 300.00006 * 17 16 15 19 19 C 1.50706 * 109.47215 * 179.97438 * 18 17 16 20 20 O 1.20825 * 119.99859 * 359.97438 * 19 18 17 21 21 O 1.34224 * 120.00295 * 180.02562 * 19 18 17 22 22 C 1.52998 * 109.47228 * 60.00058 * 18 17 16 23 23 C 1.52996 * 109.46947 * 274.99987 * 15 14 12 24 24 H 0.97001 * 120.00302 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47422 * 60.00224 * 9 7 2 26 26 H 1.08996 * 109.47888 * 300.00407 * 9 7 2 27 27 H 1.08997 * 109.46917 * 60.00290 * 10 9 7 28 28 H 1.08994 * 109.47644 * 300.00389 * 10 9 7 29 29 H 1.09003 * 109.47278 * 60.00152 * 11 10 9 30 30 H 1.09004 * 109.47680 * 300.00235 * 11 10 9 31 31 H 0.97008 * 120.00392 * 359.97438 * 14 12 11 32 32 H 1.09000 * 109.47205 * 35.00343 * 15 14 12 33 33 H 1.09003 * 109.47318 * 59.99674 * 16 15 14 34 34 H 1.09008 * 109.46908 * 300.00117 * 16 15 14 35 35 H 1.08997 * 109.47186 * 180.02562 * 17 16 15 36 36 H 1.09003 * 109.47116 * 59.99536 * 17 16 15 37 37 H 1.09000 * 109.47459 * 300.00106 * 18 17 16 38 38 H 0.96700 * 117.00196 * 179.97438 * 21 19 18 39 39 H 1.09000 * 109.47766 * 59.99578 * 22 18 17 40 40 H 1.09005 * 109.47327 * 180.02562 * 22 18 17 41 41 H 1.09000 * 109.47091 * 299.99317 * 23 15 14 42 42 H 1.08997 * 109.47192 * 60.00121 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9870 0.0001 12 6 2.4596 -6.1325 0.0007 13 8 3.6520 -5.9108 0.0012 14 7 2.0104 -7.4032 0.0009 15 6 2.9624 -8.5167 0.0020 16 6 2.2997 -9.7537 0.6116 17 6 3.2941 -10.9164 0.6134 18 6 3.7227 -11.2231 -0.8229 19 6 4.7027 -12.3680 -0.8211 20 8 5.0255 -12.8853 0.2220 21 8 5.2177 -12.8124 -1.9782 22 6 4.3855 -9.9862 -1.4324 23 6 3.3905 -8.8231 -1.4345 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.8719 -3.6043 0.8895 28 1 2.8720 -3.6044 -0.8904 29 1 0.8534 -5.0451 -0.8897 30 1 0.8539 -5.0446 0.8903 31 1 1.0566 -7.5805 0.0009 32 1 3.8378 -8.2456 0.5921 33 1 1.4241 -10.0248 0.0216 34 1 1.9946 -9.5353 1.6351 35 1 2.8218 -11.7978 1.0473 36 1 4.1693 -10.6451 1.2037 37 1 2.8475 -11.4944 -1.4133 38 1 5.8426 -13.5487 -1.9266 39 1 5.2607 -9.7147 -0.8422 40 1 4.6905 -10.2045 -2.4559 41 1 2.5150 -9.0943 -2.0245 42 1 3.8627 -7.9419 -1.8687 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594457937.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:03 Heat of formation + Delta-G solvation = -172.332623 kcal Electronic energy + Delta-G solvation = -21775.718308 eV Core-core repulsion = 18332.859532 eV Total energy + Delta-G solvation = -3442.858775 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.99648 -39.79032 -38.05134 -36.51413 -34.36810 -34.07589 -32.04500 -31.21703 -30.29346 -27.73117 -24.82067 -23.53063 -23.14606 -21.52933 -20.55858 -20.27730 -19.59523 -18.41875 -17.19020 -16.93853 -16.27223 -16.18295 -15.93046 -15.33782 -14.71893 -14.45794 -14.33179 -14.02744 -13.74603 -13.33773 -13.21827 -12.76575 -12.59201 -12.26228 -12.05930 -11.97642 -11.71769 -11.68602 -11.55546 -11.33303 -10.90969 -10.82175 -10.79512 -10.62226 -10.56634 -10.50420 -9.66660 -9.65411 -9.24661 -9.00853 -8.98014 -8.31446 -5.96897 -3.98065 1.79381 2.60738 2.93805 3.26348 3.34288 3.41607 3.47550 4.14287 4.23530 4.49758 4.52948 4.62334 4.76267 4.89865 5.01250 5.06675 5.07732 5.16185 5.36593 5.39281 5.41381 5.62388 5.64953 5.72842 5.73239 5.74327 5.79603 5.96554 6.03946 6.09976 6.28842 6.53349 6.74595 6.95133 7.18084 7.48050 7.62362 7.72704 7.85135 8.04109 8.47273 8.49102 9.09379 9.65893 11.14640 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.049020 B = 0.002344 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.059810 B =11942.443613 C =12185.764704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.139 4.139 12 C 0.513 3.487 13 O -0.537 6.537 14 N -0.737 5.737 15 C 0.141 3.859 16 C -0.125 4.125 17 C -0.101 4.101 18 C -0.080 4.080 19 C 0.483 3.517 20 O -0.516 6.516 21 O -0.516 6.516 22 C -0.108 4.108 23 C -0.129 4.129 24 H 0.259 0.741 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.399 0.601 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.111 0.889 38 H 0.409 0.591 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.771 -27.183 -2.952 27.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.075 0.925 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.179 4.179 12 C 0.301 3.699 13 O -0.413 6.413 14 N -0.390 5.390 15 C 0.036 3.964 16 C -0.163 4.163 17 C -0.139 4.139 18 C -0.099 4.099 19 C 0.325 3.675 20 O -0.403 6.403 21 O -0.328 6.328 22 C -0.146 4.146 23 C -0.167 4.167 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.233 0.767 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.129 0.871 38 H 0.268 0.732 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.315 -26.692 -2.677 27.171 hybrid contribution 0.304 0.250 -0.005 0.394 sum 4.618 -26.442 -2.682 26.976 Atomic orbital electron populations 1.69968 1.06031 1.26411 1.51348 1.25027 0.94861 0.99268 0.95433 0.86541 0.80241 0.83772 0.77507 1.19688 1.21053 1.21053 1.21315 0.93225 0.91012 1.49928 0.92533 1.19139 0.93987 0.91514 0.97103 1.21435 0.98612 0.91577 1.01652 1.21850 0.98172 0.94166 1.03707 1.21271 0.90388 0.83791 0.74425 1.90673 1.17346 1.84699 1.48575 1.46195 1.09858 1.05649 1.77275 1.20947 0.93382 0.85761 0.96310 1.21813 0.98488 0.93853 1.02145 1.21399 1.00152 0.98613 0.93699 1.21164 0.96799 0.91681 1.00289 1.23599 0.79828 0.83302 0.80774 1.90729 1.58787 1.57456 1.33364 1.84548 1.59173 1.52580 1.36462 1.21514 0.98758 0.92492 1.01807 1.21949 0.99181 0.98319 0.97269 0.93139 0.96620 0.96627 0.92746 0.92741 0.89402 0.89413 0.76725 0.89375 0.91005 0.90396 0.90462 0.90497 0.87108 0.73208 0.90986 0.90168 0.91327 0.90396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 10 C -0.09 -2.04 4.44 -26.73 -0.12 -2.15 16 11 C -0.14 -2.24 5.70 -27.88 -0.16 -2.40 16 12 C 0.51 7.89 7.79 -10.99 -0.09 7.80 16 13 O -0.54 -10.42 15.64 5.56 0.09 -10.34 16 14 N -0.74 -7.90 5.08 -53.81 -0.27 -8.17 16 15 C 0.14 1.34 2.45 -67.93 -0.17 1.18 16 16 C -0.13 -0.84 5.39 -26.73 -0.14 -0.98 16 17 C -0.10 -0.71 4.49 -26.73 -0.12 -0.83 16 18 C -0.08 -0.54 2.63 -91.77 -0.24 -0.78 16 19 C 0.48 3.89 7.63 36.01 0.27 4.16 16 20 O -0.52 -5.76 16.74 -18.75 -0.31 -6.07 16 21 O -0.52 -3.09 13.32 -39.24 -0.52 -3.61 16 22 C -0.11 -0.80 5.14 -26.70 -0.14 -0.94 16 23 C -0.13 -1.13 5.50 -26.70 -0.15 -1.27 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 28 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 29 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.40 3.13 8.60 -40.82 -0.35 2.78 16 32 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 35 H 0.08 0.53 8.10 -51.93 -0.42 0.10 16 36 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 37 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.41 0.85 9.10 45.56 0.41 1.27 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.55 8.11 -51.93 -0.42 0.13 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 348.90 15.07 5.26 5.26 Total: -1.00 -35.75 348.90 -7.85 -43.60 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -6.20 Total: -1.70 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -1.59 Total: -9.64 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.46 Total: -34.55 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.75 Total: -20.01 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.75 -7.85 -43.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594457937.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.732 kcal (2) G-P(sol) polarization free energy of solvation -35.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds