Wall clock time and date at job start Tue Mar 31 2020 05:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00046 * 2 1 4 4 H 1.48503 * 109.47398 * 240.00181 * 3 2 1 5 5 H 1.48504 * 109.46744 * 0.02562 * 3 2 1 6 6 H 1.48490 * 109.47241 * 119.99994 * 3 2 1 7 7 C 1.37875 * 120.00232 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00762 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99846 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47176 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47323 * 179.97438 * 10 9 7 12 12 C 1.50693 * 109.47091 * 179.97438 * 11 10 9 13 13 O 1.21281 * 120.00448 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99741 * 180.02562 * 12 11 10 15 15 C 1.46923 * 120.62934 * 353.44340 * 14 12 11 16 16 C 1.52772 * 109.00887 * 233.58399 * 15 14 12 17 17 C 1.53041 * 109.38190 * 305.59017 * 16 15 14 18 18 C 1.53045 * 109.53647 * 61.24102 * 17 16 15 19 19 C 1.46924 * 120.62985 * 173.72684 * 14 12 11 20 20 H 1.09004 * 109.58947 * 246.29563 * 19 14 12 21 21 C 1.52995 * 109.58962 * 6.58001 * 19 14 12 22 22 C 1.50707 * 109.47166 * 287.77475 * 21 19 14 23 23 O 1.20824 * 119.99714 * 0.02562 * 22 21 19 24 24 O 1.34220 * 120.00169 * 179.97438 * 22 21 19 25 25 H 0.97002 * 120.00237 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47269 * 59.99799 * 9 7 2 27 27 H 1.09002 * 109.46868 * 299.99973 * 9 7 2 28 28 H 1.08997 * 109.47458 * 59.99581 * 10 9 7 29 29 H 1.09002 * 109.46927 * 299.99603 * 10 9 7 30 30 H 1.09006 * 109.47023 * 59.99835 * 11 10 9 31 31 H 1.09002 * 109.47132 * 299.99890 * 11 10 9 32 32 H 1.08997 * 109.59150 * 353.42311 * 15 14 12 33 33 H 1.09006 * 109.58872 * 113.85031 * 15 14 12 34 34 H 1.09000 * 109.56038 * 185.55378 * 16 15 14 35 35 H 1.08996 * 109.38165 * 65.52033 * 16 15 14 36 36 H 1.08997 * 109.46179 * 301.21843 * 17 16 15 37 37 H 1.08994 * 109.44420 * 181.24997 * 17 16 15 38 38 H 1.09002 * 109.49473 * 178.68114 * 18 17 16 39 39 H 1.08992 * 109.52255 * 58.59906 * 18 17 16 40 40 H 1.09005 * 109.47012 * 47.77415 * 21 19 14 41 41 H 1.08994 * 109.47391 * 167.77630 * 21 19 14 42 42 H 0.96705 * 117.00173 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 6 1.4803 -4.9871 -0.0020 12 6 2.4596 -6.1325 -0.0024 13 8 3.6520 -5.9109 -0.0018 14 7 2.0103 -7.4032 -0.0034 15 6 0.5766 -7.6903 0.1402 16 6 0.3790 -8.6729 1.2932 17 6 1.2481 -9.9108 1.0602 18 6 2.7221 -9.5010 1.0198 19 6 2.9457 -8.5277 -0.1419 20 1 2.7663 -9.0378 -1.0884 21 6 4.3836 -8.0065 -0.1048 22 6 4.6883 -7.2809 -1.3901 23 8 3.8419 -7.1896 -2.2475 24 8 5.8995 -6.7352 -1.5818 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5563 -0.8919 27 1 0.6241 -2.5575 0.8880 28 1 2.8713 -3.6047 0.8890 29 1 2.8726 -3.6039 -0.8910 30 1 0.8540 -5.0447 -0.8923 31 1 0.8532 -5.0450 0.8877 32 1 0.0383 -6.7667 0.3527 33 1 0.1983 -8.1323 -0.7816 34 1 -0.6689 -8.9685 1.3452 35 1 0.6691 -8.1954 2.2291 36 1 0.9738 -10.3740 0.1125 37 1 1.0911 -10.6222 1.8710 38 1 3.3420 -10.3862 0.8772 39 1 2.9911 -9.0157 1.9579 40 1 4.5003 -7.3219 0.7354 41 1 5.0710 -8.8444 0.0110 42 1 6.0480 -6.2802 -2.4221 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594462206.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:41 Heat of formation + Delta-G solvation = -134.443203 kcal Electronic energy + Delta-G solvation = -23384.705751 eV Core-core repulsion = 19943.489985 eV Total energy + Delta-G solvation = -3441.215766 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.08031 -39.24154 -37.51495 -35.76305 -34.40562 -33.22592 -32.88153 -31.75792 -28.67522 -27.75621 -25.17128 -23.93306 -22.99427 -21.39984 -20.72967 -19.97368 -18.88985 -17.78881 -16.94003 -16.42285 -16.22098 -16.06121 -15.47251 -15.09437 -14.68775 -14.44216 -14.21575 -13.92696 -13.63538 -13.35149 -12.90662 -12.56794 -12.44255 -12.33720 -12.20286 -11.74745 -11.40333 -11.37380 -11.25731 -11.03663 -10.99492 -10.92249 -10.76181 -10.55328 -10.48972 -10.23458 -9.64664 -9.37780 -9.12270 -8.84500 -8.60284 -8.29781 -5.95603 -3.96987 2.40761 2.97430 3.13173 3.36557 3.37830 3.41097 3.45009 4.34277 4.50909 4.52687 4.61143 4.81672 4.87839 5.02778 5.06668 5.19458 5.34978 5.39077 5.40355 5.51256 5.57249 5.65277 5.70030 5.71317 5.73246 5.78667 5.80871 5.93162 6.10925 6.26862 6.56017 6.75062 6.87364 6.95420 7.18109 7.45502 7.72670 7.86100 8.04942 8.26643 8.37592 8.49046 9.09666 9.66729 11.15903 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.020173 B = 0.004173 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.660306 B = 6707.583174 C = 7758.481047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.092 4.092 11 C -0.138 4.138 12 C 0.531 3.469 13 O -0.544 6.544 14 N -0.608 5.608 15 C 0.107 3.893 16 C -0.137 4.137 17 C -0.118 4.118 18 C -0.131 4.131 19 C 0.157 3.843 20 H 0.080 0.920 21 C -0.110 4.110 22 C 0.513 3.487 23 O -0.540 6.540 24 O -0.519 6.519 25 H 0.260 0.740 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.135 0.865 41 H 0.085 0.915 42 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.219 -22.941 1.827 23.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.130 4.130 11 C -0.178 4.178 12 C 0.324 3.676 13 O -0.425 6.425 14 N -0.341 5.341 15 C -0.016 4.016 16 C -0.175 4.175 17 C -0.156 4.156 18 C -0.169 4.169 19 C 0.054 3.946 20 H 0.098 0.902 21 C -0.148 4.148 22 C 0.358 3.642 23 O -0.431 6.431 24 O -0.330 6.330 25 H 0.070 0.930 26 H 0.033 0.967 27 H 0.033 0.967 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.152 0.848 41 H 0.103 0.897 42 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 3.386 -22.883 1.976 23.216 hybrid contribution 0.369 1.233 -0.602 1.421 sum 3.754 -21.649 1.374 22.016 Atomic orbital electron populations 1.69953 1.06028 1.26621 1.51154 1.25011 0.94849 0.99204 0.95387 0.86655 0.79577 0.83098 0.78666 1.20245 1.21323 1.20241 1.21224 0.93110 0.91022 1.50236 0.92691 1.19120 0.93958 0.91459 0.97056 1.21428 0.98594 0.91500 1.01519 1.21895 0.98241 0.94160 1.03460 1.21176 0.90067 0.83424 0.72967 1.90478 1.17049 1.84115 1.50824 1.48083 1.07551 1.05481 1.73029 1.21685 0.80845 1.00499 0.98594 1.21872 1.00429 0.96171 0.99036 1.21496 0.94394 0.97496 1.02201 1.21987 0.97348 0.98815 0.98755 1.21039 0.87525 0.87227 0.98831 0.90212 1.21770 0.95927 1.00228 0.96866 1.22701 0.78675 0.75222 0.87555 1.90671 1.47261 1.59045 1.46127 1.84468 1.35997 1.67760 1.44782 0.93029 0.96659 0.96658 0.92766 0.92853 0.89282 0.89476 0.88889 0.91290 0.90444 0.91234 0.91645 0.91463 0.90593 0.91015 0.84757 0.89650 0.73858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -15.19 9.11 -34.44 -0.31 -15.51 16 8 H 0.05 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.09 -2.05 4.44 -26.73 -0.12 -2.17 16 11 C -0.14 -2.40 4.13 -27.88 -0.12 -2.52 16 12 C 0.53 8.83 6.63 -10.99 -0.07 8.76 16 13 O -0.54 -10.23 9.62 -19.38 -0.19 -10.42 16 14 N -0.61 -7.85 2.88 -165.48 -0.48 -8.33 16 15 C 0.11 1.06 6.29 -3.93 -0.02 1.03 16 16 C -0.14 -1.05 6.07 -26.83 -0.16 -1.21 16 17 C -0.12 -0.82 5.89 -26.69 -0.16 -0.98 16 18 C -0.13 -1.04 5.34 -26.61 -0.14 -1.18 16 19 C 0.16 1.76 2.46 -67.60 -0.17 1.59 16 20 H 0.08 0.93 7.69 -51.93 -0.40 0.53 16 21 C -0.11 -1.36 4.81 -27.88 -0.13 -1.49 16 22 C 0.51 7.94 5.47 36.01 0.20 8.13 16 23 O -0.54 -9.84 15.42 -25.56 -0.39 -10.24 16 24 O -0.52 -7.26 13.42 -42.46 -0.57 -7.83 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 29 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 30 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.09 1.35 7.42 -51.93 -0.39 0.97 16 32 H 0.09 0.92 5.97 -51.93 -0.31 0.61 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.13 1.89 6.06 -51.95 -0.31 1.57 16 41 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 42 H 0.40 4.24 9.10 45.56 0.41 4.65 16 LS Contribution 334.57 15.07 5.04 5.04 Total: -1.00 -35.44 334.57 -8.34 -43.79 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.02 Total: 0.95 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -1.45 Total: -3.57 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.26 Total: -34.95 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -1.15 Total: -28.49 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.44 -8.34 -43.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594462206.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.656 kcal (2) G-P(sol) polarization free energy of solvation -35.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds