Wall clock time and date at job start Tue Mar 31 2020 05:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99962 * 2 1 4 4 H 1.48500 * 109.47179 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47183 * 239.99669 * 3 2 1 6 6 H 1.48501 * 109.47590 * 119.99767 * 3 2 1 7 7 C 1.37879 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99839 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99835 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46880 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46916 * 179.97438 * 10 9 7 12 12 C 1.50695 * 109.47131 * 179.97438 * 11 10 9 13 13 O 1.21287 * 119.99731 * 0.02562 * 12 11 10 14 14 N 1.34771 * 120.00431 * 180.02562 * 12 11 10 15 15 C 1.46928 * 120.62541 * 355.09773 * 14 12 11 16 16 C 1.53197 * 108.77404 * 126.37472 * 15 14 12 17 17 C 1.53038 * 109.31349 * 54.62996 * 16 15 14 18 18 C 1.53038 * 109.54016 * 298.63814 * 17 16 15 19 19 C 1.46926 * 120.63738 * 174.82208 * 14 12 11 20 20 H 1.08997 * 109.58558 * 113.83704 * 19 14 12 21 21 C 1.53003 * 109.58278 * 353.41715 * 19 14 12 22 22 C 1.50701 * 109.46974 * 76.98877 * 21 19 14 23 23 O 1.20826 * 120.00217 * 359.97438 * 22 21 19 24 24 O 1.34238 * 119.99574 * 179.97438 * 22 21 19 25 25 H 0.96997 * 119.99710 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47005 * 300.00037 * 9 7 2 27 27 H 1.08992 * 109.47058 * 59.99888 * 9 7 2 28 28 H 1.09001 * 109.47006 * 299.99638 * 10 9 7 29 29 H 1.09005 * 109.47540 * 60.00104 * 10 9 7 30 30 H 1.08992 * 109.47035 * 299.99952 * 11 10 9 31 31 H 1.09005 * 109.46756 * 59.99839 * 11 10 9 32 32 H 1.08999 * 109.58841 * 246.15923 * 15 14 12 33 33 H 1.09003 * 109.58704 * 6.44308 * 15 14 12 34 34 H 1.08995 * 109.49624 * 174.59224 * 16 15 14 35 35 H 1.09003 * 109.49265 * 294.64669 * 16 15 14 36 36 H 1.08998 * 109.45555 * 58.66413 * 17 16 15 37 37 H 1.09000 * 109.45660 * 178.62565 * 17 16 15 38 38 H 1.09004 * 109.49443 * 181.31391 * 18 17 16 39 39 H 1.08998 * 109.49795 * 301.40980 * 18 17 16 40 40 H 1.08997 * 109.47204 * 196.98680 * 21 19 14 41 41 H 1.09006 * 109.46881 * 316.98880 * 21 19 14 42 42 H 0.96703 * 116.99576 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1030 1.6964 -1.2125 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4803 -4.9871 0.0025 12 6 2.4596 -6.1325 0.0031 13 8 3.6520 -5.9108 0.0035 14 7 2.0104 -7.4032 0.0032 15 6 0.5733 -7.6890 0.1108 16 6 0.1623 -8.5954 -1.0540 17 6 1.0519 -9.8407 -1.0646 18 6 2.5109 -9.4257 -1.2669 19 6 2.9480 -8.5287 -0.1103 20 1 2.9431 -9.1031 0.8161 21 6 4.3571 -7.9972 -0.3801 22 6 4.9458 -7.4622 0.8999 23 8 4.3040 -7.5016 1.9228 24 8 6.1833 -6.9420 0.9034 25 1 -0.4849 -0.8400 -0.0004 26 1 0.6241 -2.5567 0.8903 27 1 0.6248 -2.5570 -0.8896 28 1 2.8727 -3.6047 -0.8877 29 1 2.8714 -3.6040 0.8923 30 1 0.8533 -5.0442 0.8922 31 1 0.8540 -5.0454 -0.8878 32 1 0.3707 -8.1937 1.0555 33 1 0.0109 -6.7563 0.0668 34 1 -0.8792 -8.8932 -0.9332 35 1 0.2797 -8.0558 -1.9937 36 1 0.9521 -10.3662 -0.1149 37 1 0.7455 -10.4988 -1.8776 38 1 3.1410 -10.3146 -1.2977 39 1 2.6069 -8.8786 -2.2047 40 1 4.9838 -8.8047 -0.7585 41 1 4.3085 -7.1979 -1.1197 42 1 6.5182 -6.6118 1.7484 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594462209.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:45 Heat of formation + Delta-G solvation = -140.356204 kcal Electronic energy + Delta-G solvation = -23359.860937 eV Core-core repulsion = 19918.388764 eV Total energy + Delta-G solvation = -3441.472173 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.10054 -39.31753 -37.59241 -35.80037 -34.63473 -33.37617 -32.92835 -31.80424 -28.68100 -27.54895 -25.15886 -23.74583 -23.01674 -21.54580 -20.76138 -20.24681 -18.95942 -17.85241 -17.09168 -16.53902 -16.50062 -16.13048 -15.45858 -15.19026 -14.70430 -14.38023 -14.01706 -13.76370 -13.66862 -13.43942 -13.05340 -12.94611 -12.59186 -12.44966 -12.31974 -11.52427 -11.47292 -11.40569 -11.32025 -11.07922 -11.04422 -10.98159 -10.75152 -10.69724 -10.27644 -10.08410 -9.80786 -9.73109 -9.13574 -8.64421 -8.47872 -8.27788 -6.31725 -3.99659 2.45676 2.90281 2.97399 3.31944 3.48137 3.50324 3.68825 4.28884 4.47805 4.57006 4.59315 4.75836 4.82876 4.95400 5.02045 5.14753 5.29819 5.33567 5.45180 5.45945 5.51840 5.56683 5.59387 5.64772 5.67290 5.72835 5.76666 5.85288 6.05603 6.13481 6.49037 6.59371 6.76905 6.84275 6.99944 7.37005 7.47902 7.57791 8.24447 8.28350 8.29060 8.52668 8.94125 9.71937 11.09090 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.019552 B = 0.004170 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.727949 B = 6712.637214 C = 7823.095460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.014 3.986 3 Si 1.069 2.931 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.599 4.599 8 H 0.049 0.951 9 C 0.008 3.992 10 C -0.086 4.086 11 C -0.138 4.138 12 C 0.527 3.473 13 O -0.538 6.538 14 N -0.609 5.609 15 C 0.107 3.893 16 C -0.137 4.137 17 C -0.118 4.118 18 C -0.131 4.131 19 C 0.156 3.844 20 H 0.082 0.918 21 C -0.108 4.108 22 C 0.516 3.484 23 O -0.539 6.539 24 O -0.520 6.520 25 H 0.267 0.733 26 H 0.006 0.994 27 H 0.006 0.994 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.128 0.872 42 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.303 -23.065 -2.473 23.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.190 4.190 3 Si 0.897 3.103 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.637 4.637 8 H 0.067 0.933 9 C -0.029 4.029 10 C -0.124 4.124 11 C -0.178 4.178 12 C 0.318 3.682 13 O -0.418 6.418 14 N -0.343 5.343 15 C -0.016 4.016 16 C -0.175 4.175 17 C -0.156 4.156 18 C -0.169 4.169 19 C 0.053 3.947 20 H 0.099 0.901 21 C -0.146 4.146 22 C 0.361 3.639 23 O -0.430 6.430 24 O -0.331 6.331 25 H 0.078 0.922 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.146 0.854 42 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 3.407 -21.455 -2.579 21.877 hybrid contribution 0.290 -1.510 0.599 1.650 sum 3.697 -22.965 -1.980 23.345 Atomic orbital electron populations 1.70792 1.06860 1.30441 1.47104 1.25853 0.96561 1.02720 0.93829 0.83550 0.74878 0.75312 0.76563 1.20801 1.21446 1.21452 1.22066 0.94408 0.91991 1.55243 0.93286 1.19251 0.94599 0.93304 0.95766 1.21300 0.98311 0.90961 1.01824 1.21889 0.98258 0.94226 1.03429 1.21126 0.89954 0.83425 0.73661 1.90450 1.17115 1.83843 1.50407 1.48089 1.07259 1.05405 1.73530 1.21780 0.80424 1.00861 0.98566 1.21943 0.99795 0.96551 0.99220 1.21495 0.94341 0.97450 1.02296 1.21921 0.97148 0.99350 0.98514 1.20946 0.87222 0.87548 0.98980 0.90058 1.21696 0.94548 1.02387 0.95951 1.22605 0.78091 0.72928 0.90247 1.90653 1.60625 1.56115 1.35567 1.84475 1.33096 1.73322 1.42210 0.92247 0.97577 0.97558 0.92555 0.92625 0.89427 0.89424 0.91215 0.88968 0.90473 0.91178 0.91624 0.91397 0.90464 0.91046 0.89452 0.85418 0.73887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.54 13.65 55.43 0.76 -27.78 16 2 C 0.01 0.40 5.46 -17.82 -0.10 0.31 16 3 Si 1.07 26.08 29.90 -169.99 -5.08 21.00 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.60 -17.77 9.11 -34.44 -0.31 -18.08 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.01 0.20 4.28 -27.88 -0.12 0.08 16 10 C -0.09 -1.90 4.44 -26.73 -0.12 -2.02 16 11 C -0.14 -2.36 4.05 -27.88 -0.11 -2.47 16 12 C 0.53 8.66 7.03 -10.99 -0.08 8.58 16 13 O -0.54 -10.17 9.51 -19.27 -0.18 -10.35 16 14 N -0.61 -7.78 2.94 -165.47 -0.49 -8.26 16 15 C 0.11 1.04 6.35 -3.71 -0.02 1.02 16 16 C -0.14 -1.03 6.08 -26.61 -0.16 -1.19 16 17 C -0.12 -0.81 5.89 -26.69 -0.16 -0.97 16 18 C -0.13 -1.03 5.28 -26.84 -0.14 -1.17 16 19 C 0.16 1.74 2.46 -67.82 -0.17 1.58 16 20 H 0.08 0.96 7.50 -51.93 -0.39 0.57 16 21 C -0.11 -1.33 4.84 -27.88 -0.14 -1.47 16 22 C 0.52 7.93 5.47 36.01 0.20 8.13 16 23 O -0.54 -9.78 15.69 -25.65 -0.40 -10.19 16 24 O -0.52 -7.19 13.42 -42.28 -0.57 -7.76 16 25 H 0.27 8.24 7.22 -40.82 -0.29 7.95 16 26 H 0.01 0.16 8.01 -51.93 -0.42 -0.25 16 27 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 28 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 29 H 0.05 1.32 8.10 -51.93 -0.42 0.90 16 30 H 0.09 1.41 7.74 -51.93 -0.40 1.01 16 31 H 0.09 1.34 7.90 -51.93 -0.41 0.93 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.90 5.93 -51.93 -0.31 0.59 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.79 8.03 -51.93 -0.42 0.37 16 41 H 0.13 1.80 6.05 -51.93 -0.31 1.48 16 42 H 0.40 4.12 9.10 45.56 0.41 4.54 16 LS Contribution 333.60 15.07 5.03 5.03 Total: -1.00 -36.41 333.60 -8.32 -44.73 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.95 Total: 1.26 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -1.43 Total: -7.67 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.27 Total: -36.05 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -1.15 Total: -28.30 kcal Atomic # 14 Polarization: 26.08 SS G_CDS: -5.08 Total: 21.00 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.41 -8.32 -44.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594462209.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.625 kcal (2) G-P(sol) polarization free energy of solvation -36.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds