Wall clock time and date at job start Tue Mar 31 2020 05:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99489 * 2 1 4 4 H 1.48490 * 109.47094 * 270.00084 * 3 2 1 5 5 H 1.48500 * 109.47264 * 30.00448 * 3 2 1 6 6 H 1.48506 * 109.46778 * 149.99957 * 3 2 1 7 7 C 1.37874 * 120.00078 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00201 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99488 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47059 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47336 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47105 * 179.97438 * 11 10 9 13 13 O 1.21288 * 120.00190 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00192 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00235 * 180.02562 * 14 12 11 16 16 C 1.52994 * 109.47175 * 180.02562 * 15 14 12 17 17 H 1.09005 * 109.46999 * 304.99868 * 16 15 14 18 18 C 1.50699 * 109.47229 * 65.00148 * 16 15 14 19 19 O 1.20821 * 120.00058 * 120.00068 * 18 16 15 20 20 O 1.34234 * 119.99673 * 299.99548 * 18 16 15 21 21 C 1.52998 * 109.47346 * 185.00052 * 16 15 14 22 22 C 1.53782 * 113.61779 * 179.97438 * 21 16 15 23 23 C 1.53781 * 87.08260 * 219.93457 * 22 21 16 24 24 C 1.53786 * 87.17350 * 25.39213 * 23 22 21 25 25 H 0.97002 * 120.00249 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47462 * 60.00632 * 9 7 2 27 27 H 1.08999 * 109.47861 * 299.99924 * 9 7 2 28 28 H 1.09011 * 109.46712 * 60.00327 * 10 9 7 29 29 H 1.08995 * 109.47502 * 300.00603 * 10 9 7 30 30 H 1.08999 * 109.46967 * 60.00254 * 11 10 9 31 31 H 1.08993 * 109.47255 * 300.00103 * 11 10 9 32 32 H 0.97001 * 119.99341 * 359.97438 * 14 12 11 33 33 H 1.09007 * 109.46940 * 59.99756 * 15 14 12 34 34 H 1.09004 * 109.47190 * 300.00554 * 15 14 12 35 35 H 0.96698 * 116.99766 * 179.97438 * 20 18 16 36 36 H 1.08997 * 112.84789 * 311.19983 * 21 16 15 37 37 H 1.09001 * 113.61250 * 105.38275 * 22 21 16 38 38 H 1.08997 * 113.61225 * 334.48116 * 22 21 16 39 39 H 1.09002 * 113.61445 * 139.98212 * 23 22 21 40 40 H 1.09002 * 113.61408 * 270.79943 * 23 22 21 41 41 H 1.08993 * 113.61491 * 89.15923 * 24 23 22 42 42 H 1.09000 * 113.61138 * 220.06261 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 6 4.0216 -2.6363 -0.0010 11 6 5.5516 -2.6363 -0.0022 12 6 6.0540 -4.0570 -0.0015 13 8 5.2660 -4.9790 -0.0005 14 7 7.3792 -4.3033 -0.0018 15 6 7.8676 -5.6845 -0.0016 16 6 9.3975 -5.6844 -0.0015 17 1 9.7609 -5.0950 -0.8434 18 6 9.8997 -5.0838 1.2862 19 8 10.5943 -5.7380 2.0274 20 8 9.5753 -3.8221 1.6096 21 6 9.9076 -7.1213 -0.1270 22 6 11.4415 -7.2319 -0.1372 23 6 11.2780 -8.3107 -1.2208 24 6 9.9382 -7.6440 -1.5749 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6803 0.8888 27 1 3.8746 -0.6798 -0.8911 28 1 3.6580 -3.1504 -0.8909 29 1 3.6587 -3.1501 0.8891 30 1 5.9156 -2.1221 0.8873 31 1 5.9142 -2.1228 -0.8926 32 1 8.0094 -3.5659 -0.0029 33 1 7.5039 -6.1985 -0.8915 34 1 7.5044 -6.1982 0.8885 35 1 9.9207 -3.4806 2.4458 36 1 9.4249 -7.8044 0.5719 37 1 11.8581 -7.6103 0.7963 38 1 11.9418 -6.3304 -0.4905 39 1 12.0210 -8.2470 -2.0159 40 1 11.1718 -9.3190 -0.8207 41 1 10.0269 -6.8554 -2.3220 42 1 9.1431 -8.3546 -1.8004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596003342.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:25 Heat of formation + Delta-G solvation = -134.825306 kcal Electronic energy + Delta-G solvation = -21988.540960 eV Core-core repulsion = 18547.308624 eV Total energy + Delta-G solvation = -3441.232336 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.14577 -39.41579 -38.95219 -36.42731 -35.35627 -34.23830 -32.18365 -31.59222 -28.48537 -26.20853 -25.52159 -24.61601 -23.30151 -21.09171 -20.60477 -19.91511 -19.67897 -18.39735 -17.28726 -17.01234 -16.47235 -16.28810 -15.83989 -15.46877 -15.35775 -14.83665 -14.27034 -14.18807 -13.53252 -13.40773 -12.96362 -12.85792 -12.69655 -12.61167 -12.16552 -12.08788 -11.95764 -11.80372 -11.56143 -11.13922 -11.00004 -10.95155 -10.76623 -10.69908 -10.50596 -9.99014 -9.82593 -9.67960 -9.40547 -9.11206 -9.08771 -8.49498 -5.99122 -3.96785 1.81703 2.57833 2.88075 3.15535 3.32616 3.39697 3.42669 4.04502 4.15847 4.20239 4.41558 4.48464 4.52755 4.67301 4.74832 4.99244 5.10849 5.30414 5.31681 5.34219 5.35492 5.43841 5.53855 5.54465 5.61988 5.63774 5.69996 5.80324 6.05252 6.13114 6.14653 6.39537 6.59055 6.71854 6.94844 7.40024 7.47493 7.48223 7.60573 7.84616 8.41007 8.61148 9.07822 9.62961 11.14598 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.033308 B = 0.002758 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.447045 B =10150.760458 C =10615.166017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.882 3.118 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.088 4.088 11 C -0.140 4.140 12 C 0.513 3.487 13 O -0.536 6.536 14 N -0.738 5.738 15 C 0.129 3.871 16 C -0.082 4.082 17 H 0.116 0.884 18 C 0.483 3.517 19 O -0.507 6.507 20 O -0.515 6.515 21 C -0.095 4.095 22 C -0.126 4.126 23 C -0.144 4.144 24 C -0.134 4.134 25 H 0.262 0.738 26 H 0.015 0.985 27 H 0.011 0.989 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.405 0.595 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.412 0.588 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.276 -11.888 -1.224 29.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.091 0.909 9 C -0.052 4.052 10 C -0.126 4.126 11 C -0.180 4.180 12 C 0.301 3.699 13 O -0.412 6.412 14 N -0.394 5.394 15 C 0.005 3.995 16 C -0.102 4.102 17 H 0.133 0.867 18 C 0.324 3.676 19 O -0.394 6.394 20 O -0.327 6.327 21 C -0.114 4.114 22 C -0.163 4.163 23 C -0.182 4.182 24 C -0.172 4.172 25 H 0.072 0.928 26 H 0.033 0.967 27 H 0.029 0.971 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.241 0.759 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.272 0.728 36 H 0.120 0.880 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 26.573 -12.778 -1.379 29.518 hybrid contribution 0.939 1.568 0.617 1.929 sum 27.512 -11.210 -0.762 29.718 Atomic orbital electron populations 1.69926 1.06310 1.26769 1.51410 1.25059 0.94748 0.99163 0.94735 0.86754 0.80316 0.83632 0.78393 1.20366 1.21489 1.19032 1.21171 0.89567 0.94534 1.50354 0.90942 1.19607 0.97283 0.92214 0.96089 1.21269 0.89282 0.99496 1.02519 1.21854 1.00589 0.91843 1.03744 1.21173 0.81277 0.92690 0.74749 1.90700 1.55256 1.46746 1.48505 1.46168 1.07910 1.07836 1.77438 1.21180 0.89501 0.85138 1.03690 1.21465 0.96951 0.97997 0.93738 0.86655 1.23368 0.76859 0.79356 0.87969 1.90721 1.35609 1.61518 1.51562 1.84478 1.72255 1.30450 1.45547 1.22476 0.97425 0.92746 0.98707 1.22858 0.94830 0.99087 0.99569 1.22835 0.97580 0.98704 0.99050 1.23032 0.98288 1.00546 0.95312 0.92815 0.96679 0.97091 0.92111 0.92113 0.89326 0.89362 0.75929 0.89736 0.91131 0.72804 0.88035 0.90644 0.90512 0.91291 0.90020 0.89697 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.45 13.96 55.43 0.77 -27.68 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.52 -15.18 9.66 -34.44 -0.33 -15.51 16 8 H 0.07 2.31 7.99 -52.49 -0.42 1.89 16 9 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 10 C -0.09 -1.81 4.44 -26.73 -0.12 -1.93 16 11 C -0.14 -2.14 5.70 -27.88 -0.16 -2.30 16 12 C 0.51 7.76 7.83 -10.98 -0.09 7.67 16 13 O -0.54 -10.38 15.98 5.55 0.09 -10.29 16 14 N -0.74 -7.88 5.06 -60.29 -0.31 -8.19 16 15 C 0.13 1.21 5.05 -4.05 -0.02 1.19 16 16 C -0.08 -0.57 2.12 -91.78 -0.19 -0.77 16 17 H 0.12 0.62 7.96 -51.93 -0.41 0.20 16 18 C 0.48 4.02 7.43 36.00 0.27 4.29 16 19 O -0.51 -5.54 15.61 -18.75 -0.29 -5.84 16 20 O -0.51 -3.35 11.42 -39.27 -0.45 -3.79 16 21 C -0.09 -0.64 2.72 -89.71 -0.24 -0.89 16 22 C -0.13 -0.85 6.20 -25.92 -0.16 -1.01 16 23 C -0.14 -0.81 8.08 -25.92 -0.21 -1.02 16 24 C -0.13 -0.76 7.65 -25.82 -0.20 -0.96 16 25 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 26 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 27 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 28 H 0.06 1.33 8.10 -51.92 -0.42 0.91 16 29 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.40 3.42 6.95 -40.82 -0.28 3.13 16 33 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.41 1.29 9.10 45.56 0.41 1.70 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.60 7.97 -51.93 -0.41 0.19 16 38 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.43 7.98 -51.93 -0.41 0.01 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 347.09 15.07 5.23 5.23 Total: -1.00 -36.06 347.09 -7.39 -43.46 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -6.11 Total: -0.09 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -1.67 Total: -9.91 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.47 Total: -35.86 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.65 Total: -19.92 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.06 -7.39 -43.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596003342.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.367 kcal (2) G-P(sol) polarization free energy of solvation -36.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds