Wall clock time and date at job start Tue Mar 31 2020 05:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00191 * 2 1 4 4 H 1.48498 * 109.47279 * 239.99706 * 3 2 1 5 5 H 1.48496 * 109.46989 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46883 * 120.00179 * 3 2 1 7 7 C 1.37877 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00048 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00256 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47391 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.46931 * 180.02562 * 10 9 7 12 12 C 1.50708 * 109.47069 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99583 * 359.97438 * 12 11 10 14 14 N 1.34769 * 120.00035 * 180.02562 * 12 11 10 15 15 C 1.46504 * 119.99870 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.47151 * 179.97438 * 15 14 12 17 17 H 1.08996 * 109.46660 * 54.99744 * 16 15 14 18 18 C 1.50705 * 109.46896 * 294.99981 * 16 15 14 19 19 O 1.20822 * 119.99469 * 239.99913 * 18 16 15 20 20 O 1.34220 * 119.99988 * 60.00056 * 18 16 15 21 21 C 1.52994 * 109.46785 * 174.99912 * 16 15 14 22 22 C 1.53782 * 113.61734 * 299.99807 * 21 16 15 23 23 C 1.53781 * 87.08260 * 220.02231 * 22 21 16 24 24 C 1.53786 * 87.17350 * 25.39213 * 23 22 21 25 25 H 0.96998 * 119.99414 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46849 * 60.00284 * 9 7 2 27 27 H 1.08999 * 109.46860 * 300.00325 * 9 7 2 28 28 H 1.08997 * 109.47238 * 59.99581 * 10 9 7 29 29 H 1.09004 * 109.46593 * 300.00204 * 10 9 7 30 30 H 1.09004 * 109.47228 * 60.00160 * 11 10 9 31 31 H 1.08997 * 109.47139 * 299.99423 * 11 10 9 32 32 H 0.96998 * 120.00352 * 359.97438 * 14 12 11 33 33 H 1.09004 * 109.47003 * 59.99813 * 15 14 12 34 34 H 1.08997 * 109.46796 * 299.99423 * 15 14 12 35 35 H 0.96697 * 117.00377 * 179.97438 * 20 18 16 36 36 H 1.09002 * 112.84929 * 71.19883 * 21 16 15 37 37 H 1.09001 * 113.61250 * 105.47049 * 22 21 16 38 38 H 1.08997 * 113.61225 * 334.56890 * 22 21 16 39 39 H 1.09002 * 113.61445 * 139.98212 * 23 22 21 40 40 H 1.09002 * 113.61408 * 270.79943 * 23 22 21 41 41 H 1.08993 * 113.61491 * 89.15923 * 24 23 22 42 42 H 1.09000 * 113.61138 * 220.06261 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6622 -0.0015 11 6 1.4801 -4.9871 -0.0033 12 6 2.4594 -6.1326 -0.0037 13 8 3.6518 -5.9110 -0.0031 14 7 2.0101 -7.4032 -0.0057 15 6 2.9621 -8.5168 -0.0056 16 6 2.1970 -9.8418 -0.0075 17 1 1.5059 -9.8610 -0.8501 18 6 1.4244 -9.9776 1.2793 19 8 1.6429 -10.9070 2.0198 20 8 0.4936 -9.0662 1.6025 21 6 3.1867 -11.0018 -0.1331 22 6 4.0291 -10.9565 -1.4188 23 6 3.8489 -12.4817 -1.4970 24 6 2.5571 -12.2943 -0.6840 25 1 -0.4849 0.8401 -0.0004 26 1 0.6247 -2.5563 -0.8920 27 1 0.6240 -2.5575 0.8880 28 1 2.8712 -3.6048 0.8890 29 1 2.8725 -3.6039 -0.8910 30 1 0.8545 -5.0441 -0.8940 31 1 0.8526 -5.0455 0.8860 32 1 1.0565 -7.5805 -0.0066 33 1 3.5875 -8.4600 0.8854 34 1 3.5900 -8.4581 -0.8946 35 1 0.0237 -9.1957 2.4377 36 1 3.7769 -11.1544 0.7706 37 1 5.0611 -10.6466 -1.2539 38 1 3.5498 -10.4178 -2.2361 39 1 3.6786 -12.8499 -2.5087 40 1 4.6209 -13.0403 -0.9677 41 1 1.6746 -12.1220 -1.3000 42 1 2.4024 -13.0630 0.0732 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596003343.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:28 Heat of formation + Delta-G solvation = -139.522256 kcal Electronic energy + Delta-G solvation = -21942.159754 eV Core-core repulsion = 18500.723743 eV Total energy + Delta-G solvation = -3441.436011 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.08755 -39.36260 -38.97039 -36.41095 -35.26163 -34.12333 -32.14345 -31.49048 -28.01629 -26.29572 -25.37258 -24.54586 -23.38832 -21.12760 -20.65125 -19.95025 -19.58955 -18.33311 -17.25130 -16.92494 -16.30232 -16.07035 -15.76505 -15.37570 -15.28123 -14.80930 -14.40783 -14.17898 -13.53429 -13.37453 -12.91651 -12.86624 -12.59866 -12.26426 -12.20229 -11.95618 -11.79425 -11.74267 -11.29896 -11.10695 -10.89101 -10.76414 -10.70442 -10.59591 -10.56894 -10.53050 -9.67354 -9.64709 -9.24316 -9.02737 -9.00282 -8.29861 -5.95839 -3.97137 1.84759 2.62227 2.95201 3.21404 3.37852 3.41159 3.45168 4.03473 4.17290 4.25910 4.42557 4.50848 4.59421 4.66079 4.79318 5.04065 5.20048 5.32075 5.32350 5.37043 5.40149 5.48309 5.56556 5.59889 5.65077 5.76058 5.77058 5.81767 6.07528 6.17791 6.28947 6.45993 6.76048 6.96384 7.19241 7.51514 7.66180 7.73382 7.86465 8.05127 8.47435 8.49667 9.09826 9.66636 11.15664 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.033960 B = 0.002644 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.296340 B =10587.667117 C =11106.876343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.137 4.137 12 C 0.513 3.487 13 O -0.539 6.539 14 N -0.738 5.738 15 C 0.129 3.871 16 C -0.082 4.082 17 H 0.116 0.884 18 C 0.484 3.516 19 O -0.510 6.510 20 O -0.513 6.513 21 C -0.094 4.094 22 C -0.136 4.136 23 C -0.141 4.141 24 C -0.134 4.134 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.015 0.985 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.405 0.595 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.413 0.587 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.367 -26.419 -1.491 26.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.133 4.133 11 C -0.177 4.177 12 C 0.302 3.698 13 O -0.415 6.415 14 N -0.394 5.394 15 C 0.005 3.995 16 C -0.102 4.102 17 H 0.134 0.866 18 C 0.326 3.674 19 O -0.398 6.398 20 O -0.326 6.326 21 C -0.113 4.113 22 C -0.173 4.173 23 C -0.179 4.179 24 C -0.171 4.171 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.241 0.759 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.272 0.728 36 H 0.122 0.878 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.357 -26.328 -1.650 26.485 hybrid contribution -0.472 0.705 0.654 1.071 sum 1.884 -25.624 -0.996 25.712 Atomic orbital electron populations 1.69954 1.06028 1.26620 1.51185 1.25019 0.94859 0.99226 0.95410 0.86652 0.79571 0.83082 0.78680 1.20228 1.21348 1.20243 1.21246 0.93158 0.91055 1.50192 0.92641 1.19128 0.93970 0.91444 0.97108 1.21445 0.98629 0.91586 1.01655 1.21833 0.98126 0.93977 1.03801 1.21265 0.90370 0.83659 0.74552 1.90678 1.17367 1.84774 1.48731 1.46186 1.10274 1.05478 1.77441 1.21173 0.91896 0.82775 1.03691 1.21467 0.97362 0.97570 0.93795 0.86615 1.23364 0.77426 0.78750 0.87897 1.90719 1.64894 1.32507 1.51673 1.84478 1.50194 1.52251 1.45657 1.22493 0.96481 0.92848 0.99514 1.22997 1.00567 0.96847 0.96917 1.22792 0.98007 0.96456 1.00628 1.22987 0.97472 0.97259 0.99416 0.93032 0.96604 0.96626 0.92751 0.92723 0.89359 0.89316 0.75891 0.91198 0.89709 0.72753 0.87790 0.90710 0.89535 0.91194 0.90028 0.90106 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.10 -2.06 4.44 -26.73 -0.12 -2.18 16 11 C -0.14 -2.26 5.70 -27.88 -0.16 -2.42 16 12 C 0.51 8.12 7.83 -10.98 -0.09 8.03 16 13 O -0.54 -10.68 15.98 5.56 0.09 -10.59 16 14 N -0.74 -8.35 5.06 -60.29 -0.31 -8.65 16 15 C 0.13 1.27 4.94 -4.04 -0.02 1.25 16 16 C -0.08 -0.62 2.12 -91.77 -0.19 -0.81 16 17 H 0.12 0.67 7.95 -51.93 -0.41 0.26 16 18 C 0.48 4.29 7.62 36.01 0.27 4.57 16 19 O -0.51 -5.91 16.60 -18.75 -0.31 -6.22 16 20 O -0.51 -3.63 11.42 -39.23 -0.45 -4.08 16 21 C -0.09 -0.68 2.54 -89.71 -0.23 -0.90 16 22 C -0.14 -0.84 6.59 -25.92 -0.17 -1.01 16 23 C -0.14 -0.81 8.08 -25.92 -0.21 -1.02 16 24 C -0.13 -0.87 7.62 -25.82 -0.20 -1.06 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 29 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 30 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.41 3.71 6.94 -40.82 -0.28 3.43 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.84 7.28 -51.93 -0.38 0.46 16 35 H 0.41 1.50 9.10 45.56 0.41 1.92 16 36 H 0.10 0.86 7.86 -51.93 -0.41 0.45 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.50 8.10 -51.93 -0.42 0.08 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.46 7.97 -51.93 -0.41 0.05 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 350.95 15.07 5.29 5.29 Total: -1.00 -35.41 350.95 -7.72 -43.13 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -6.09 Total: -0.50 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -1.66 Total: -9.02 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.43 Total: -35.08 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.67 Total: -20.89 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.41 -7.72 -43.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596003343.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.389 kcal (2) G-P(sol) polarization free energy of solvation -35.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds