Wall clock time and date at job start Tue Mar 31 2020 06:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37090 * 120.00109 * 2 1 4 4 H 1.08004 * 119.99936 * 160.35922 * 3 2 1 5 5 C 1.38951 * 120.00117 * 340.35887 * 3 2 1 6 6 N 1.31406 * 120.00068 * 340.87157 * 5 3 2 7 7 Si 1.86802 * 119.99939 * 160.86913 * 5 3 2 8 8 H 1.48498 * 109.47333 * 94.98244 * 7 5 3 9 9 H 1.48500 * 109.47222 * 214.98471 * 7 5 3 10 10 H 1.48503 * 109.47249 * 334.98523 * 7 5 3 11 11 C 1.34775 * 119.99398 * 179.97438 * 2 1 3 12 12 O 1.21292 * 119.99654 * 184.98347 * 11 2 1 13 13 C 1.50695 * 120.00627 * 4.99309 * 11 2 1 14 14 C 1.50708 * 112.84699 * 281.48328 * 13 11 2 15 15 O 1.20823 * 120.00301 * 119.37532 * 14 13 11 16 16 O 1.34230 * 119.99797 * 299.37762 * 14 13 11 17 17 C 1.45203 * 117.00054 * 179.97438 * 16 14 13 18 18 C 1.53007 * 109.46771 * 60.00128 * 17 16 14 19 19 C 1.53001 * 109.47171 * 179.97438 * 17 16 14 20 20 C 1.53000 * 109.47076 * 300.00301 * 17 16 14 21 21 C 1.53776 * 113.61843 * 150.17608 * 13 11 2 22 22 C 1.53783 * 87.08116 * 220.01528 * 21 13 11 23 23 C 1.53775 * 113.61592 * 52.67373 * 13 11 2 24 24 H 1.08997 * 109.46867 * 84.72572 * 1 2 3 25 25 H 1.08999 * 109.47534 * 204.72442 * 1 2 3 26 26 H 1.09001 * 109.47083 * 324.72388 * 1 2 3 27 27 H 0.96999 * 120.00245 * 180.02562 * 6 5 3 28 28 H 1.08997 * 109.47157 * 59.99681 * 18 17 16 29 29 H 1.08995 * 109.47072 * 180.02562 * 18 17 16 30 30 H 1.09002 * 109.46780 * 299.99720 * 18 17 16 31 31 H 1.08995 * 109.46847 * 60.00487 * 19 17 16 32 32 H 1.08995 * 109.46672 * 180.02562 * 19 17 16 33 33 H 1.08997 * 109.47025 * 300.00482 * 19 17 16 34 34 H 1.09003 * 109.47161 * 59.99557 * 20 17 16 35 35 H 1.09003 * 109.46988 * 179.97438 * 20 17 16 36 36 H 1.09003 * 109.47035 * 299.99655 * 20 17 16 37 37 H 1.08997 * 113.61453 * 334.56563 * 21 13 11 38 38 H 1.09008 * 113.61194 * 105.46915 * 21 13 11 39 39 H 1.09001 * 113.61832 * 270.88251 * 22 21 13 40 40 H 1.09002 * 113.68717 * 139.99078 * 22 21 13 41 41 H 1.08999 * 113.61982 * 254.53268 * 23 13 11 42 42 H 1.09005 * 113.61393 * 25.35774 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1834 1.2144 0.3144 5 6 1.5164 2.3556 -0.4045 6 7 0.4211 2.2922 -1.1276 7 14 2.2211 4.0164 0.0799 8 1 3.0852 4.5259 -1.0151 9 1 1.1116 4.9736 0.3210 10 1 3.0267 3.8702 1.3188 11 6 2.1388 -1.1673 0.0005 12 8 3.3483 -1.1693 0.0918 13 6 1.3896 -2.4699 -0.1125 14 6 0.7571 -2.8958 1.1875 15 8 -0.4413 -3.0315 1.2604 16 8 1.5252 -3.1244 2.2643 17 6 0.8480 -3.5311 3.4827 18 6 0.0903 -4.8369 3.2334 19 6 1.8793 -3.7445 4.5925 20 6 -0.1392 -2.4414 3.9056 21 6 2.1927 -3.5846 -0.8033 22 6 0.8850 -3.9818 -1.5083 23 6 0.4293 -2.5262 -1.3122 24 1 -0.3633 0.0945 -1.0233 25 1 -0.3634 -0.9334 0.4298 26 1 -0.3633 0.8390 0.5935 27 1 -0.0213 3.1078 -1.4103 28 1 0.7935 -5.6132 2.9320 29 1 -0.4184 -5.1420 4.1478 30 1 -0.6444 -4.6852 2.4426 31 1 2.4194 -2.8146 4.7702 32 1 1.3710 -4.0502 5.5069 33 1 2.5822 -4.5210 4.2909 34 1 -0.8738 -2.2898 3.1147 35 1 -0.6478 -2.7469 4.8199 36 1 0.4006 -1.5112 4.0831 37 1 2.9597 -3.2132 -1.4828 38 1 2.5662 -4.3438 -0.1159 39 1 0.2900 -4.7046 -0.9500 40 1 1.0183 -4.2606 -2.5536 41 1 -0.6207 -2.4309 -1.0360 42 1 0.7135 -1.8644 -2.1304 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597012318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:19 Heat of formation + Delta-G solvation = -91.460809 kcal Electronic energy + Delta-G solvation = -24521.461384 eV Core-core repulsion = 21082.109474 eV Total energy + Delta-G solvation = -3439.351910 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.13703 -39.14026 -37.15582 -36.11846 -34.64968 -33.85366 -31.63441 -27.64903 -27.35704 -27.30524 -26.33250 -25.11752 -24.35339 -22.68947 -20.12122 -19.95724 -18.42181 -17.06726 -16.78739 -16.36893 -15.87587 -15.35096 -14.85439 -14.79714 -14.30075 -14.11165 -13.75707 -13.55164 -13.49690 -12.66919 -12.42596 -12.22171 -12.12407 -11.85467 -11.84271 -11.76747 -11.72315 -11.41819 -11.29762 -11.23031 -11.10180 -10.86363 -10.73420 -10.60318 -10.39554 -10.25929 -10.16510 -10.01444 -9.63579 -9.04943 -8.35731 -7.70854 -6.36223 -3.86997 2.47441 2.84373 3.15182 3.24253 3.31194 3.82144 4.09854 4.63480 4.76969 4.80377 4.86928 4.88035 4.94071 4.98966 5.09862 5.16565 5.46281 5.49723 5.57852 5.70666 5.78779 5.83839 5.90481 5.94467 5.95779 6.04150 6.10273 6.18958 6.27316 6.28559 6.36281 6.40036 6.43836 6.61306 6.80760 6.85858 7.20555 7.55230 8.05045 8.15939 8.44818 9.14350 9.38846 9.93525 10.67171 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.018098 B = 0.006332 C = 0.005527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.719779 B = 4421.076745 C = 5064.984753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.434 5.434 3 C -0.311 4.311 4 H 0.102 0.898 5 C 0.034 3.966 6 N -0.872 5.872 7 Si 0.922 3.078 8 H -0.277 1.277 9 H -0.282 1.282 10 H -0.268 1.268 11 C 0.462 3.538 12 O -0.576 6.576 13 C -0.100 4.100 14 C 0.505 3.495 15 O -0.504 6.504 16 O -0.337 6.337 17 C 0.113 3.887 18 C -0.181 4.181 19 C -0.140 4.140 20 C -0.183 4.183 21 C -0.097 4.097 22 C -0.148 4.148 23 C -0.108 4.108 24 H 0.065 0.935 25 H 0.038 0.962 26 H 0.060 0.940 27 H 0.268 0.732 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.289 -11.576 5.526 13.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.151 5.151 3 C -0.439 4.439 4 H 0.120 0.880 5 C -0.171 4.171 6 N -0.510 5.510 7 Si 0.748 3.252 8 H -0.203 1.203 9 H -0.207 1.207 10 H -0.193 1.193 11 C 0.248 3.752 12 O -0.460 6.460 13 C -0.105 4.105 14 C 0.348 3.652 15 O -0.392 6.392 16 O -0.253 6.253 17 C 0.077 3.923 18 C -0.238 4.238 19 C -0.197 4.197 20 C -0.240 4.240 21 C -0.134 4.134 22 C -0.185 4.185 23 C -0.146 4.146 24 H 0.084 0.916 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.119 0.881 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.210 -11.455 5.566 13.134 hybrid contribution -0.034 0.990 0.302 1.036 sum -3.244 -10.465 5.868 12.428 Atomic orbital electron populations 1.21706 0.80940 0.99031 1.02503 1.43586 1.05570 1.04572 1.61400 1.19678 0.98413 0.83039 1.42759 0.88041 1.25304 0.96575 0.99978 0.95202 1.70044 1.19686 1.29187 1.32094 0.85986 0.78533 0.81255 0.79381 1.20299 1.20736 1.19296 1.19143 0.87395 0.83345 0.85322 1.90521 1.13652 1.86256 1.55584 1.21852 0.99794 0.98275 0.90556 1.22622 0.85376 0.72379 0.84780 1.90508 1.15879 1.48308 1.84541 1.86649 1.41288 1.78094 1.19304 1.22178 0.92879 0.94664 0.82592 1.22482 1.01459 0.96042 1.03810 1.21827 0.98568 1.03264 0.96022 1.22488 1.00132 0.98466 1.02954 1.22728 0.96781 0.95226 0.98712 1.22975 0.97244 0.97101 1.01181 1.22991 0.99480 0.96685 0.95410 0.91619 0.94344 0.92117 0.92161 0.92151 0.91295 0.89757 0.91278 0.90619 0.91566 0.89707 0.91351 0.91725 0.88079 0.90944 0.90314 0.90699 0.89482 0.88233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.40 7.36 59.85 0.44 2.84 16 2 N -0.43 -11.37 3.02 -122.19 -0.37 -11.74 16 3 C -0.31 -8.77 9.32 -14.94 -0.14 -8.91 16 4 H 0.10 2.99 7.37 -52.48 -0.39 2.61 16 5 C 0.03 0.89 4.98 -17.47 -0.09 0.81 16 6 N -0.87 -23.22 10.88 55.50 0.60 -22.62 16 7 Si 0.92 20.73 29.59 -169.99 -5.03 15.69 16 8 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 C 0.46 11.57 6.52 -10.99 -0.07 11.50 16 12 O -0.58 -16.21 16.16 5.55 0.09 -16.12 16 13 C -0.10 -1.99 0.65 -156.00 -0.10 -2.09 16 14 C 0.51 9.64 5.00 36.01 0.18 9.82 16 15 O -0.50 -9.39 10.26 -18.75 -0.19 -9.58 16 16 O -0.34 -6.28 9.88 -39.26 -0.39 -6.67 16 17 C 0.11 1.65 1.13 -90.62 -0.10 1.55 16 18 C -0.18 -2.27 8.37 37.16 0.31 -1.96 16 19 C -0.14 -1.66 8.85 37.16 0.33 -1.33 16 20 C -0.18 -2.66 8.37 37.16 0.31 -2.35 16 21 C -0.10 -1.64 6.88 -25.92 -0.18 -1.81 16 22 C -0.15 -2.12 7.81 -25.92 -0.20 -2.32 16 23 C -0.11 -1.88 5.13 -25.92 -0.13 -2.01 16 24 H 0.07 1.57 7.27 -51.93 -0.38 1.19 16 25 H 0.04 0.82 3.99 -51.93 -0.21 0.61 16 26 H 0.06 1.49 7.29 -51.93 -0.38 1.11 16 27 H 0.27 6.73 8.31 -40.82 -0.34 6.40 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.20 5.89 -51.93 -0.31 0.90 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.39 5.89 -51.93 -0.31 1.09 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.10 1.77 7.97 -51.93 -0.41 1.36 16 38 H 0.07 1.14 8.10 -51.92 -0.42 0.72 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.09 1.49 6.72 -51.93 -0.35 1.14 16 42 H 0.10 1.82 8.09 -51.93 -0.42 1.39 16 LS Contribution 331.63 15.07 5.00 5.00 Total: -1.00 -31.07 331.63 -6.24 -37.30 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.50 Total: 5.01 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 0.56 Total: 3.72 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.23 Total: -34.36 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -0.49 Total: -32.37 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.07 -6.24 -37.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597012318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.158 kcal (2) G-P(sol) polarization free energy of solvation -31.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds