Wall clock time and date at job start Tue Mar 31 2020 05:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47139 * 2 1 4 4 C 1.53004 * 109.47049 * 184.58323 * 3 2 1 5 5 C 1.53002 * 109.46979 * 64.58239 * 3 2 1 6 6 C 1.50694 * 109.47017 * 60.00112 * 5 3 2 7 7 O 1.20826 * 120.00400 * 0.02562 * 6 5 3 8 8 O 1.34234 * 119.99963 * 179.97438 * 6 5 3 9 9 C 1.50694 * 109.47154 * 304.58435 * 3 2 1 10 10 O 1.21280 * 120.00435 * 124.84843 * 9 3 2 11 11 N 1.34783 * 119.99874 * 304.84740 * 9 3 2 12 12 C 1.46501 * 120.00122 * 185.09071 * 11 9 3 13 13 C 1.52995 * 109.47356 * 184.93817 * 12 11 9 14 14 C 1.50703 * 115.54786 * 54.07397 * 13 12 11 15 15 H 1.08004 * 119.99916 * 215.61200 * 14 13 12 16 16 C 1.37873 * 120.00250 * 35.33345 * 14 13 12 17 17 N 1.31524 * 119.99737 * 356.02423 * 16 14 13 18 18 Si 1.86795 * 120.00154 * 176.01823 * 16 14 13 19 19 H 1.48510 * 109.47003 * 90.00350 * 18 16 14 20 20 H 1.48504 * 109.47442 * 210.00058 * 18 16 14 21 21 H 1.48492 * 109.47311 * 330.00366 * 18 16 14 22 22 C 1.53001 * 117.49820 * 199.74322 * 13 12 11 23 23 C 1.52995 * 117.49970 * 268.40545 * 13 12 11 24 24 H 1.09009 * 109.47222 * 60.00105 * 1 2 3 25 25 H 1.09003 * 109.47268 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47814 * 300.00111 * 1 2 3 27 27 H 1.08998 * 109.47076 * 239.99937 * 2 1 3 28 28 H 1.09001 * 109.46659 * 120.00168 * 2 1 3 29 29 H 1.09001 * 109.46663 * 185.69704 * 4 3 2 30 30 H 1.08998 * 109.46650 * 305.69644 * 4 3 2 31 31 H 1.08995 * 109.46926 * 65.69561 * 4 3 2 32 32 H 1.09003 * 109.46695 * 179.97438 * 5 3 2 33 33 H 1.08995 * 109.47005 * 299.99959 * 5 3 2 34 34 H 0.96704 * 117.00155 * 179.97438 * 8 6 5 35 35 H 0.97002 * 120.00043 * 5.08864 * 11 9 3 36 36 H 1.09002 * 109.46956 * 64.93587 * 12 11 9 37 37 H 1.09002 * 109.47123 * 304.94351 * 12 11 9 38 38 H 0.97000 * 119.99915 * 184.99322 * 17 16 14 39 39 H 1.09001 * 117.49710 * 215.00275 * 22 13 12 40 40 H 1.08994 * 117.50389 * 0.02562 * 22 13 12 41 41 H 1.09000 * 117.50113 * 359.97051 * 23 13 12 42 42 H 1.08996 * 117.50024 * 144.97271 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5657 1.4440 -0.1153 5 6 1.6262 2.1297 1.3029 6 6 2.2191 1.3873 2.4726 7 8 2.9029 0.4092 2.2836 8 8 1.9885 1.8132 3.7245 9 6 1.4471 2.1849 -1.1697 10 8 0.8351 3.2158 -0.9865 11 7 1.5969 1.7032 -2.4196 12 6 1.1186 2.4797 -3.5661 13 6 1.2969 1.6613 -4.8464 14 6 0.6749 0.2887 -4.8323 15 1 1.1635 -0.5308 -5.3386 16 6 -0.5147 0.0777 -4.1683 17 7 -1.0669 1.0543 -3.4819 18 14 -1.3424 -1.5952 -4.2435 19 1 -0.8545 -2.4397 -3.1236 20 1 -2.8134 -1.4253 -4.1307 21 1 -1.0175 -2.2506 -5.5357 22 6 1.3035 2.4204 -6.1749 23 6 2.6051 1.8362 -5.6202 24 1 -0.3634 0.5139 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 3.9366 2.4639 -0.0137 30 1 3.9901 0.8227 0.6733 31 1 3.8569 1.0465 -1.0875 32 1 1.9900 3.1572 1.3030 33 1 0.5394 2.1286 1.3850 34 1 2.3896 1.3043 4.4423 35 1 2.0215 0.8424 -2.5600 36 1 1.6910 3.4041 -3.6431 37 1 0.0633 2.7161 -3.4300 38 1 -1.8646 0.8869 -2.9559 39 1 0.8580 1.9269 -7.0386 40 1 1.1812 3.5027 -6.1367 41 1 3.3386 2.5346 -5.2174 42 1 3.0162 0.9584 -6.1188 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601982886.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:47 Heat of formation + Delta-G solvation = -113.918339 kcal Electronic energy + Delta-G solvation = -24109.351780 eV Core-core repulsion = 20669.026038 eV Total energy + Delta-G solvation = -3440.325742 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.77598 -39.14182 -36.91780 -36.32581 -34.98556 -32.97863 -32.16330 -30.44352 -28.51132 -26.08893 -25.36753 -23.61615 -22.39351 -21.33616 -20.99444 -19.26601 -18.36330 -18.15799 -16.56356 -16.27202 -16.06642 -15.23417 -15.09828 -14.95518 -14.66165 -13.92688 -13.57340 -13.42398 -13.29378 -12.82160 -12.56798 -12.36369 -12.06395 -11.94181 -11.71139 -11.58975 -11.47090 -11.37352 -11.07243 -10.77432 -10.73782 -10.52059 -10.42042 -10.30956 -10.22902 -10.08193 -9.69684 -9.04895 -8.84228 -8.75127 -8.27638 -7.78533 -5.98654 -4.18756 2.21101 3.00807 3.20832 3.30547 3.32610 3.54198 4.23550 4.30436 4.68017 4.94792 5.06434 5.12775 5.41961 5.47278 5.63977 5.69811 5.71740 5.78808 5.94302 6.01836 6.02225 6.07121 6.25491 6.31144 6.34808 6.45613 6.52892 6.56373 6.61033 6.64965 6.71862 6.87630 6.91431 7.11517 7.25443 7.59125 7.69702 7.90374 7.98404 8.31256 8.61946 8.83274 9.23699 9.44544 10.89628 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.019033 B = 0.006042 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.799783 B = 4633.150454 C = 5403.545895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.121 4.121 3 C -0.066 4.066 4 C -0.151 4.151 5 C -0.092 4.092 6 C 0.481 3.519 7 O -0.508 6.508 8 O -0.519 6.519 9 C 0.522 3.478 10 O -0.564 6.564 11 N -0.676 5.676 12 C 0.164 3.836 13 C 0.037 3.963 14 C -0.496 4.496 15 H 0.059 0.941 16 C 0.078 3.922 17 N -0.862 5.862 18 Si 0.888 3.112 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.199 4.199 23 C -0.213 4.213 24 H 0.081 0.919 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.406 0.594 35 H 0.397 0.603 36 H 0.016 0.984 37 H 0.118 0.882 38 H 0.262 0.738 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.987 -0.147 10.190 11.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.159 4.159 3 C -0.069 4.069 4 C -0.209 4.209 5 C -0.129 4.129 6 C 0.325 3.675 7 O -0.397 6.397 8 O -0.331 6.331 9 C 0.306 3.694 10 O -0.444 6.444 11 N -0.321 5.321 12 C 0.041 3.959 13 C 0.037 3.963 14 C -0.533 4.533 15 H 0.077 0.923 16 C -0.126 4.126 17 N -0.498 5.498 18 Si 0.715 3.285 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.238 4.238 23 C -0.250 4.250 24 H 0.100 0.900 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.264 0.736 35 H 0.231 0.769 36 H 0.034 0.966 37 H 0.135 0.865 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.354 0.614 9.962 11.326 hybrid contribution -0.023 -1.664 0.223 1.679 sum 5.331 -1.050 10.185 11.544 Atomic orbital electron populations 1.21968 0.95532 1.01688 1.02987 1.21807 0.96317 0.93762 1.03969 1.20600 0.97313 0.96668 0.92354 1.22077 0.92666 1.02362 1.03751 1.21216 1.03552 1.00152 0.88014 1.23657 0.77394 0.82708 0.83762 1.90602 1.36978 1.26707 1.85386 1.84579 1.72192 1.59037 1.17261 1.19841 0.80199 0.85274 0.84059 1.90619 1.42753 1.25748 1.85323 1.45543 1.58627 1.22830 1.05143 1.21071 1.02096 0.89678 0.83035 1.19241 0.93315 0.95610 0.88175 1.20469 1.05501 0.92676 1.34670 0.92262 1.24947 0.96404 0.96489 0.94809 1.69875 1.20980 1.30386 1.28608 0.86652 0.78958 0.84282 0.78585 1.20462 1.21151 1.19955 1.22936 1.01679 0.97745 1.01427 1.22948 0.91524 1.02062 1.08465 0.90031 0.93087 0.93627 0.91125 0.89508 0.92841 0.89691 0.91796 0.87099 0.86834 0.73618 0.76864 0.96634 0.86477 0.92741 0.90288 0.91525 0.91415 0.90689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.35 37.16 0.35 -2.47 16 2 C -0.12 -1.93 4.55 -26.73 -0.12 -2.05 16 3 C -0.07 -1.04 0.42 -155.66 -0.07 -1.11 16 4 C -0.15 -2.15 8.06 37.16 0.30 -1.85 16 5 C -0.09 -1.30 3.93 -27.88 -0.11 -1.41 16 6 C 0.48 6.07 7.73 36.00 0.28 6.34 16 7 O -0.51 -7.21 12.14 -18.75 -0.23 -7.43 16 8 O -0.52 -5.16 13.42 -39.27 -0.53 -5.69 16 9 C 0.52 10.30 4.99 -10.99 -0.05 10.24 16 10 O -0.56 -12.87 15.96 5.56 0.09 -12.78 16 11 N -0.68 -13.92 4.79 -60.30 -0.29 -14.21 16 12 C 0.16 3.77 4.62 -4.04 -0.02 3.75 16 13 C 0.04 0.86 2.04 -155.66 -0.32 0.54 16 14 C -0.50 -12.27 8.43 -34.44 -0.29 -12.56 16 15 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 16 C 0.08 1.94 5.30 -17.82 -0.09 1.84 16 17 N -0.86 -22.03 10.07 55.43 0.56 -21.47 16 18 Si 0.89 19.83 29.54 -169.99 -5.02 14.81 16 19 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 C -0.20 -4.29 9.96 -26.69 -0.27 -4.55 16 23 C -0.21 -4.34 9.92 -26.69 -0.26 -4.60 16 24 H 0.08 1.66 7.04 -51.92 -0.37 1.30 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.04 0.71 6.55 -51.93 -0.34 0.37 16 27 H 0.07 1.16 7.37 -51.93 -0.38 0.77 16 28 H 0.09 1.33 5.43 -51.93 -0.28 1.05 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 1.18 5.67 -51.93 -0.29 0.89 16 31 H 0.06 0.90 7.89 -51.93 -0.41 0.49 16 32 H 0.11 1.52 8.05 -51.93 -0.42 1.10 16 33 H 0.11 1.66 6.55 -51.93 -0.34 1.32 16 34 H 0.41 2.18 9.10 45.56 0.41 2.59 16 35 H 0.40 7.95 7.06 -40.82 -0.29 7.66 16 36 H 0.02 0.35 8.09 -51.93 -0.42 -0.07 16 37 H 0.12 3.08 5.90 -51.93 -0.31 2.78 16 38 H 0.26 6.62 8.32 -40.82 -0.34 6.28 16 39 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 LS Contribution 336.25 15.07 5.07 5.07 Total: -1.00 -28.23 336.25 -6.54 -34.77 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -5.51 Total: 14.81 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -0.68 Total: -7.87 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.27 Total: -35.68 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.67 Total: -25.90 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.23 -6.54 -34.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601982886.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.150 kcal (2) G-P(sol) polarization free energy of solvation -28.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds